Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y19 6.4375405
2R:R:V30 5.4575406
3R:R:N38 9.0725409
4R:R:Q48 7.655407
5R:R:L51 5.37429
6R:R:F55 4.548508
7R:R:N56 5.02429
8R:R:N61 7.4549
9R:R:Y69 7.406518
10R:R:Y81 6.27405
11R:R:W86 10.528518
12R:R:F96 7.45416
13R:R:F101 9.405417
14R:R:R118 7.7525439
15R:R:Y119 5.956559
16R:R:H124 4.9925455
17R:R:F128 4.355408
18R:R:I137 3.51407
19R:R:W156 6.715406
20R:R:T167 6.735414
21R:R:S169 5.5175414
22R:R:F170 9.79406
23R:R:R172 8.494505
24R:R:Y186 6.355408
25R:R:F197 5.38407
26R:R:Y198 6.404509
27R:R:Y332 11.85408
28R:R:I333 4.9225407
29R:R:H352 8.465404
30R:R:W360 9.35167618
31R:R:I365 4.812507
32R:R:N366 6.374509
33R:R:Y370 6.495439
34R:R:F377 7.546529
35L:L:?1 8.814611310
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:T80 R:R:W86 19.97138.49NoYes068
2R:R:D79 R:R:T80 18.35054.34NoNo066
3R:R:D79 R:R:R87 16.72182.38NoNo064
4R:R:H83 R:R:R87 15.0855.64NoNo054
5R:R:C11 R:R:C166 11.53687.28NoNo053
6R:R:C166 R:R:Y81 13.15365.38NoYes035
7R:R:N357 R:R:Y81 25.74174.65NoYes085
8R:R:N357 R:R:W360 27.290813.56NoYes088
9R:R:W360 R:R:Y69 23.06966.75YesYes188
10R:R:L100 R:R:Y69 18.26698.21NoYes188
11R:R:F96 R:R:L100 41.76666.09YesNo168
12R:R:F96 R:R:W86 32.491712.03YesYes168
13L:L:?1 R:R:W360 32.02185.94YesYes108
14L:L:?1 R:R:L100 24.965214.45YesNo108
15R:R:H352 R:R:N339 16.37136.38YesNo047
16R:R:F335 R:R:N339 15.041210.87NoNo087
17L:L:?1 R:R:F335 15.849612.71YesNo008
18R:R:W26 R:R:W360 12.89088.43NoYes058
19R:R:Q74 R:R:W360 14.451818.62NoYes088
20R:R:N104 R:R:Y69 34.431110.47NoYes178
21R:R:N104 R:R:Y332 98.32748.14NoYes078
22R:R:N362 R:R:Y332 10015.12NoYes098
23R:R:N362 R:R:N366 99.378810.9NoYes099
24R:R:D66 R:R:N366 18.57354.04NoYes099
25R:R:D66 R:R:N38 16.200113.46NoYes099
26L:L:?1 R:R:N104 64.143215.35YesNo107
27R:R:F55 R:R:N56 21.85894.83YesYes089
28R:R:F55 R:R:R118 45.64537.48YesYes089
29R:R:R118 R:R:Y370 70.76588.23YesYes399
30R:R:N366 R:R:Y370 75.71585.81YesYes099
31R:R:L51 R:R:N56 13.44434.12YesYes299
32R:R:N61 R:R:T110 14.997410.24YesNo098
33R:R:L62 R:R:T110 16.19617.37NoNo098
34R:R:L62 R:R:N366 18.56966.87NoYes099
35R:R:F128 R:R:F132 11.92316.43YesNo087
36L:L:?1 R:R:F101 20.106710.9YesYes107
37R:R:F101 R:R:F170 17.20765.36YesYes076
38R:R:F170 R:R:T179 14.212912.97YesNo066
39R:R:L155 R:R:T179 12.27757.37NoNo086
40R:R:A115 R:R:F197 10.23854.16NoYes087
41R:R:A115 R:R:Y198 11.29394NoYes089
42R:R:R118 R:R:Y198 33.7910.29YesYes099
43R:R:I201 R:R:Y119 12.81112.42NoYes099
44R:R:I201 R:R:Y198 14.97752.42NoYes099
45R:R:I365 R:R:N366 12.40494.25YesYes079
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:W26 R:R:W360 8.43 0 No Yes 5 8 2 1
R:R:L100 R:R:Y69 8.21 1 No Yes 8 8 1 1
R:R:S103 R:R:Y69 6.36 0 No Yes 6 8 2 1
R:R:N104 R:R:Y69 10.47 1 No Yes 7 8 1 1
R:R:W360 R:R:Y69 6.75 1 Yes Yes 8 8 1 1
L:L:?1 R:R:Y69 5.24 1 Yes Yes 0 8 0 1
R:R:Q74 R:R:W360 18.62 0 No Yes 8 8 2 1
R:R:S77 R:R:T167 4.8 0 No Yes 7 4 2 1
R:R:F96 R:R:L100 6.09 1 Yes No 6 8 2 1
L:L:?1 R:R:L100 14.45 1 Yes No 0 8 0 1
R:R:F101 R:R:F152 16.08 1 Yes No 7 8 1 2
R:R:F101 R:R:S169 5.28 1 Yes Yes 7 4 1 1
R:R:F101 R:R:F170 5.36 1 Yes Yes 7 6 1 2
L:L:?1 R:R:F101 10.9 1 Yes Yes 0 7 0 1
R:R:N104 R:R:Y332 8.14 1 No Yes 7 8 1 2
L:L:?1 R:R:N104 15.35 1 Yes No 0 7 0 1
R:R:S105 R:R:Y186 8.9 0 No Yes 7 8 2 1
R:R:I108 R:R:Y186 4.84 0 No Yes 8 8 2 1
R:R:I108 R:R:Y332 16.92 0 No Yes 8 8 2 2
R:R:L109 R:R:Y186 4.69 0 No Yes 6 8 2 1
R:R:T167 R:R:V165 6.35 1 Yes No 4 4 1 1
R:R:R172 R:R:V165 6.54 0 Yes No 5 4 2 1
L:L:?1 R:R:V165 6.66 1 Yes No 0 4 0 1
R:R:S169 R:R:T167 4.8 1 Yes Yes 4 4 1 1
L:L:?1 R:R:T167 10.99 1 Yes Yes 0 4 0 1
R:R:R172 R:R:S169 5.27 0 Yes Yes 5 4 2 1
L:L:?1 R:R:S169 6.72 1 Yes Yes 0 4 0 1
R:R:F170 R:R:R172 17.1 0 Yes Yes 6 5 2 2
R:R:N339 R:R:R172 9.64 0 No Yes 7 5 2 2
L:L:?1 R:R:Y186 6.99 1 Yes Yes 0 8 0 1
R:R:F187 R:R:L336 7.31 0 No No 8 7 2 1
R:R:F335 R:R:N339 10.87 0 No No 8 7 1 2
L:L:?1 R:R:F335 12.71 1 Yes No 0 8 0 1
L:L:?1 R:R:L336 4.13 1 Yes No 0 7 0 1
R:R:N357 R:R:W360 13.56 0 No Yes 8 8 2 1
L:L:?1 R:R:T359 10.99 1 Yes No 0 8 0 1
L:L:?1 R:R:W360 5.94 1 Yes Yes 0 8 0 1
L:L:?1 R:R:A356 3.52 1 Yes No 0 6 0 1
R:R:G27 R:R:W360 2.81 0 No Yes 5 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8G05_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 4.03
Number of Linked Nodes 263
Number of Links 277
Number of Hubs 35
Number of Links mediated by Hubs 136
Number of Communities 6
Number of Nodes involved in Communities 27
Number of Links involved in Communities 33
Path Summary
Number Of Nodes in MetaPath 46
Number Of Links MetaPath 45
Number of Shortest Paths 43164
Length Of Smallest Path 3
Average Path Length 12.2946
Length of Longest Path 26
Minimum Path Strength 1.485
Average Path Strength 7.73692
Maximum Path Strength 16.09
Minimum Path Correlation 0.7
Average Path Correlation 0.938317
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 6.66667
Average % Of Corr. Nodes 61.1275
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.4723
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component• protein-containing complex   • receptor complex   • membrane-bounded organelle   • intracellular anatomical structure   • tertiary granule membrane   • membrane   • intracellular vesicle   • intracellular membrane-bounded organelle   • endomembrane system   • tertiary granule   • intracellular organelle   • cytoplasmic vesicle membrane   • cellular anatomical structure   • bounding membrane of organelle   • vesicle membrane   • cytoplasmic vesicle   • organelle   • secretory granule   • secretory vesicle   • cytoplasm   • vesicle   • organelle membrane   • secretory granule membrane   • cell periphery   • plasma membrane   • specific granule membrane   • specific granule   • D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • lysosomal membrane   • lysosome   • Golgi apparatus   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeYI9
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeYI9
Name6-(octylamino)pyrimidine-2,4(3H,5H)-dione
Synonyms
Identifier
FormulaC12 H21 N3 O2
Molecular Weight239.314
SMILES
PubChem125356668
Formal Charge0
Total Atoms38
Total Chiral Atoms0
Total Bonds38
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NQS5
Sequence
>8G05_nogp_Chain_R
DANFSCYHE SVLGYRYVA VSWGVVVAV TGTVGNVLT LLALAIQPK 
LRTRFNLLI ANLTLADLL YCTLLQPFS VDTYLHLHW RTGATFCRV 
FGLLLFASN SVSILTLCL IALGRYLLI AHPKLFPQV FSAKGIVLA 
LVSTWVVGV ASFAPLWPI YILVPVVCT CSFDRIRGR PYTTILMGI 
YFVLGLSSV GIFYCLIHR QVKRAAQAL DQYKLFGKV TRMCFAVFL 
CFALSYIPF LLLNILDAR VQAPRVVHM LAANLTWLN GCINPVLYA 
AMNRQFRQA YGSILKR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8G05AOrphanOrphanGPR84Homo sapiens6-OAU-Gi1/β1/γ232023-11-0110.1038/s41467-023-41201-0
8G05 (No Gprot) AOrphanOrphanGPR84Homo sapiens6-OAU-32023-11-0110.1038/s41467-023-41201-0
8J1AAOrphanOrphanGPR84Homo sapiens--Gi1/β1/γ23.242023-06-2110.1038/s41467-023-38985-6
8J1A (No Gprot) AOrphanOrphanGPR84Homo sapiens--3.242023-06-2110.1038/s41467-023-38985-6
8J19AOrphanOrphanGPR84Homo sapiensLY237-Gi1/β1/γ23.232023-06-2110.1038/s41467-023-38985-6
8J19 (No Gprot) AOrphanOrphanGPR84Homo sapiensLY237-3.232023-06-2110.1038/s41467-023-38985-6
8J18AOrphanOrphanGPR84Homo sapiens(3R)-3-Hydroxydodecanoic acid-Gi1/β1/γ22.892023-06-2110.1038/s41467-023-38985-6
8J18 (No Gprot) AOrphanOrphanGPR84Homo sapiens(3R)-3-Hydroxydodecanoic acid-2.892023-06-2110.1038/s41467-023-38985-6




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Download 8G05_nogp.zip



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