Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.5121020
2R:R:F9 3.2125407
3R:R:Y19 6.6725405
4R:R:T33 3.3675404
5R:R:N38 6.5125409
6R:R:Q48 3.94407
7R:R:F55 4.4175418
8R:R:L58 4.3425408
9R:R:N61 6.132559
10R:R:D66 6.76833619
11R:R:Y69 6.025438
12R:R:Q74 4.962538
13R:R:W86 8.41667668
14R:R:F96 6.97566
15R:R:F101 9.2625427
16R:R:S105 4.265407
17R:R:R118 6.9525419
18R:R:Y119 7.568589
19R:R:H124 5.585485
20R:R:F128 8.522518
21R:R:F132 6.8417
22R:R:I137 4.15407
23R:R:F152 7.6875428
24R:R:R172 7.18405
25R:R:Y186 8.26428
26R:R:F187 5.26408
27R:R:F197 7.115407
28R:R:Y198 6.64167619
29R:R:Y332 9.535408
30R:R:F335 11.2225428
31R:R:I340 3.735406
32R:R:R349 6.7575401
33R:R:W360 8.006538
34R:R:N362 7.52833619
35R:R:N366 7.746519
36R:R:L369 2.125409
37R:R:Y370 5.48429719
38R:R:F377 6.582549
39R:R:Y381 5.544508
40R:R:R390 6.79754105
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:N104 31.50915.04YesNo007
2R:R:N104 R:R:S103 58.51194.47NoNo076
3R:R:S103 R:R:Y69 57.47675.09NoYes068
4R:R:L73 R:R:Y69 23.56234.69NoYes088
5R:R:F96 R:R:L73 21.765912.18YesNo068
6R:R:F96 R:R:W86 14.05527.02YesYes668
7R:R:W360 R:R:Y69 36.60138.68YesYes388
8R:R:N357 R:R:W360 29.541414.69NoYes088
9R:R:A23 R:R:N357 20.85634.69NoNo078
10R:R:A23 R:R:Y81 19.93918.01NoNo075
11R:R:M353 R:R:Y81 13.30544.79NoNo055
12R:R:M353 R:R:R349 12.32737.44NoYes051
13R:R:N104 R:R:Y332 57.46538.14NoYes078
14R:R:N362 R:R:Y332 1009.3YesYes098
15R:R:D66 R:R:N362 33.06956.73YesYes199
16R:R:D66 R:R:N38 38.17326.73YesYes099
17L:L:?1 R:R:I108 15.44054.47YesNo208
18R:R:I108 R:R:Y332 19.143715.71NoYes088
19L:L:?1 R:R:T359 15.387311.53YesNo208
20R:R:T359 R:R:Y332 24.66224.99NoYes088
21R:R:N38 R:R:P367 28.12566.52YesNo099
22R:R:G37 R:R:P367 27.0794.06NoNo099
23R:R:G37 R:R:V36 26.02475.52NoNo095
24R:R:L40 R:R:V36 24.96294.47NoNo085
25R:R:L40 R:R:Y381 22.801110.55NoYes088
26R:R:N362 R:R:N366 60.376813.62YesYes199
27R:R:N366 R:R:Y370 65.07334.65YesYes199
28R:R:R118 R:R:Y370 18.94588.23YesYes199
29R:R:F55 R:R:R118 21.94864.28YesYes189
30R:R:F55 R:R:I59 18.57665.02YesNo088
31R:R:F377 R:R:I59 17.29785.02YesNo098
32R:R:I384 R:R:Y381 16.2553.63NoYes078
33R:R:I384 R:R:I47 14.0592.94NoNo075
34R:R:I114 R:R:Y370 13.27886.04NoYes199
35R:R:I114 R:R:L58 14.37874.28NoYes098
36R:R:L62 R:R:T110 13.41211.79NoNo098
37R:R:N61 R:R:T110 11.60424.39YesNo098
38L:L:?1 R:R:F152 41.76596.67YesYes208
39R:R:F152 R:R:L182 39.91254.87YesNo088
40R:R:L182 R:R:Y178 35.840210.55NoNo088
41R:R:L155 R:R:Y178 27.60424.69NoNo088
42R:R:L155 R:R:Y159 25.52628.21NoNo085
43R:R:L98 R:R:Y159 21.34735.86NoNo075
44R:R:L98 R:R:W156 19.24644.56NoNo076
45R:R:Y198 R:R:Y370 31.14754.96YesYes199
46R:R:A115 R:R:Y198 30.78975.34NoYes089
47R:R:A115 R:R:F197 29.81164.16NoYes087
48R:R:F197 R:R:Y119 23.42539.28YesYes079
49R:R:I201 R:R:Y119 12.66983.63NoYes099
50R:R:I122 R:R:I201 11.43297.36NoNo089
51R:R:P157 R:R:W156 15.02194.05NoNo056
52R:R:I158 R:R:P157 12.89825.08NoNo055
53R:R:I158 R:R:R174 10.76696.26NoNo055
54R:R:F335 R:R:N339 13.324516.92YesNo087
55R:R:N362 R:R:S331 18.08562.98YesNo098
56R:R:L361 R:R:S331 16.97433NoNo058
57R:R:L330 R:R:L361 12.48332.77NoNo055
58R:R:L330 R:R:L358 11.34922.77NoNo059
59R:R:L358 R:R:P334 10.2153.28NoNo099
60R:R:I122 R:R:Q204 10.19222.74NoNo086
61R:R:D66 R:R:N366 10.72886.73YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L100 8.66 2 Yes No 0 8 0 1
L:L:?1 R:R:F101 9.53 2 Yes Yes 0 7 0 1
L:L:?1 R:R:N104 15.04 2 Yes No 0 7 0 1
L:L:?1 R:R:I108 4.47 2 Yes No 0 8 0 1
L:L:?1 R:R:F152 6.67 2 Yes Yes 0 8 0 1
L:L:?1 R:R:Y186 10.09 2 Yes Yes 0 8 0 1
L:L:?1 R:R:F335 20.01 2 Yes Yes 0 8 0 1
L:L:?1 R:R:L336 5.42 2 Yes No 0 7 0 1
L:L:?1 R:R:T359 11.53 2 Yes No 0 8 0 1
R:R:F101 R:R:L100 6.09 2 Yes No 7 8 1 1
R:R:F101 R:R:F152 13.93 2 Yes Yes 7 8 1 1
R:R:F101 R:R:F170 7.5 2 Yes No 7 6 1 2
R:R:N104 R:R:S103 4.47 0 No No 7 6 1 2
R:R:N104 R:R:Y332 8.14 0 No Yes 7 8 1 2
R:R:F152 R:R:S105 5.28 2 Yes Yes 8 7 1 2
R:R:S105 R:R:Y186 6.36 0 Yes Yes 7 8 2 1
R:R:I108 R:R:Y186 6.04 2 No Yes 8 8 1 1
R:R:I108 R:R:Y332 15.71 2 No Yes 8 8 1 2
R:R:L109 R:R:Y186 10.55 0 No Yes 6 8 2 1
R:R:F152 R:R:L182 4.87 2 Yes No 8 8 1 2
R:R:T359 R:R:Y332 4.99 2 No Yes 8 8 1 2
R:R:F335 R:R:N339 16.92 2 Yes No 8 7 1 2
R:R:F335 R:R:T359 5.19 2 Yes No 8 8 1 1
L:L:?1 R:R:A356 3.7 2 Yes No 0 6 0 1
R:R:A355 R:R:F335 2.77 0 No Yes 6 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8J18_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 4.04
Number of Linked Nodes 279
Number of Links 304
Number of Hubs 40
Number of Links mediated by Hubs 157
Number of Communities 10
Number of Nodes involved in Communities 48
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 62
Number Of Links MetaPath 61
Number of Shortest Paths 46133
Length Of Smallest Path 3
Average Path Length 13.5505
Length of Longest Path 32
Minimum Path Strength 1.37
Average Path Strength 6.73249
Maximum Path Strength 18.465
Minimum Path Correlation 0.71
Average Path Correlation 0.93505
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 56.007
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.7028
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHXD
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHXD
Name(3R)-3-HYDROXYDODECANOIC ACID
Synonyms3-OH-DODECANOATE
Identifier
FormulaC12 H24 O3
Molecular Weight216.317
SMILES
PubChem5312804
Formal Charge0
Total Atoms39
Total Chiral Atoms1
Total Bonds38
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NQS5
Sequence
>8J18_nogp_Chain_R
NFSCYHESV LGYRYVAVS WGVVVAVTG TVGNVLTLL ALAIQPKLR 
TRFNLLIAN LTLADLLYC TLLQPFSVD TYLHLHWRT GATFCRVFG 
LLLFASNSV SILTLCLIA LGRYLLIAH PKLFPQVFS AKGIVLALV 
STWVVGVAS FAPLWPIYI LVPVVCTCS FDRIRGRPY TTILMGIYF 
VLGLSSVGI FYCLIHRQV KRAAQALDQ YKLGKVTRM CFAVFLCFA 
LSYIPFLLL NILDARVQA PRVVHMLAA NLTWLNGCI NPVLYAAMN 
RQFRQAYGS ILKRGPRSF HRL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8J18AOrphanOrphanGPR84Homo sapiens(3R)-3-Hydroxydodecanoic acid-Gi1/β1/γ22.892023-06-21doi.org/10.1038/s41467-023-38985-6
8J18 (No Gprot) AOrphanOrphanGPR84Homo sapiens(3R)-3-Hydroxydodecanoic acid-2.892023-06-21doi.org/10.1038/s41467-023-38985-6
8J19AOrphanOrphanGPR84Homo sapiensLY237-Gi1/β1/γ23.232023-06-21doi.org/10.1038/s41467-023-38985-6
8J19 (No Gprot) AOrphanOrphanGPR84Homo sapiensLY237-3.232023-06-21doi.org/10.1038/s41467-023-38985-6
8J1AAOrphanOrphanGPR84Homo sapiens--Gi1/β1/γ23.242023-06-21doi.org/10.1038/s41467-023-38985-6
8J1A (No Gprot) AOrphanOrphanGPR84Homo sapiens--3.242023-06-21doi.org/10.1038/s41467-023-38985-6
8G05AOrphanOrphanGPR84Homo sapiens6-OAU-Gi1/β1/γ232023-11-01doi.org/10.1038/s41467-023-41201-0
8G05 (No Gprot) AOrphanOrphanGPR84Homo sapiens6-OAU-32023-11-01doi.org/10.1038/s41467-023-41201-0




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Download 8J18_nogp.zip



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