Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:D36 6.2415
2R:R:R40 8.216513
3R:R:S44 3.6525417
4R:R:K46 7.094194
5R:R:P52 5.0475408
6R:R:L62 4.24115
7R:R:D63 6.4425419
8R:R:I64 3.25754116
9R:R:N67 6.6154209
10R:R:A76 2.724114
11R:R:F77 3.802867117
12R:R:F80 4.946676117
13R:R:E85 4.5925418
14R:R:Q87 6.895418
15R:R:H97 6.54254218
16R:R:T111 8.02419
17R:R:Q113 9.805419
18R:R:V120 4.12857737
19R:R:P121 2.74508
20R:R:S122 4.856535
21R:R:R135 12.5175419
22R:R:D137 5.354519
23R:R:N139 5.1675439
24R:R:I141 4.725439
25R:R:V144 3.7725439
26R:R:P145 4.968539
27R:R:S148 4.2575438
28R:R:R156 3.785409
29R:R:W159 6.554519
30R:R:N163 4.49439
31R:R:L165 5.1875439
32R:R:V168 2.3975408
33R:R:P172 3.116539
34R:R:L182 5.535408
35R:R:F197 3.54754179
36R:R:H207 6.535449
37R:R:H209 5.43649
38R:R:N211 5.2654189
39R:R:I213 5.7365189
40R:R:C220 3.94175
41R:R:F221 3.4685179
42R:R:L224 4.94179
43R:R:L230 3.774509
44R:R:N233 7.345449
45R:R:Y234 5.5775446
46R:R:N235 5.5654189
47R:R:F240 4.775689
48R:R:L250 4.8375409
49R:R:L253 4.5525409
50R:R:F255 3.68589
51R:R:H256 11.26549
52R:R:I260 4.0875489
53R:R:D265 2.9554248
54R:R:F268 2.902589
55R:R:N271 3.1875409
56R:R:I277 2.995408
57R:R:H278 5.35448
58R:R:N282 3.396589
59R:R:S290 4.064248
60R:R:L301 3.9254149
61R:R:F312 7.74408
62R:R:L321 3.5054148
63R:R:L324 3.464149
64R:R:T327 5.02469
65R:R:I334 5.322527
66R:R:D349 5.85468
67R:R:N353 3.89429
68R:R:I355 5.385428
69R:R:L358 4.848508
70R:R:L367 4.44147
71R:R:Q373 6.015468
72R:R:N375 4.8775429
73R:R:I377 5.7125427
74R:R:T384 3.22408
75R:R:F385 4.4825409
76R:R:L394 4.29407
77R:R:S397 4.695468
78R:R:N399 4.875429
79R:R:I401 4.07833628
80R:R:I404 6.3975427
81R:R:F409 4.0545108
82R:R:L418 4.5725109
83R:R:D419 6.37469
84R:R:N423 4.2429
85R:R:L425 5.225409
86R:R:F428 2.9125404
87R:R:L433 4.5954109
88R:R:L436 6.264108
89R:R:L439 4.3285108
90R:R:F456 3.1885105
91R:R:L462 5.3925407
92R:R:V464 4.51333677
93R:R:P465 4.815479
94R:R:Y466 4.358576
95R:R:Y468 6.428599
96R:R:Q469 5.175479
97R:R:P524 3.1675479
98R:R:T526 2.64268
99R:R:F529 6.18254278
100R:R:L535 3.408599
101R:R:L536 5.9425495
102R:R:I548 3.54754167
103R:R:F549 4.75254285
104R:R:F555 3.9675455
105R:R:N556 6.39409
106R:R:T562 3.705455
107R:R:F564 3.91754128
108R:R:S572 3.7654136
109R:R:F576 3.224136
110R:R:I577 4.0054125
111R:R:G578 2.11254128
112R:R:L579 4.564137
113R:R:S581 5.1175407
114R:R:M587 3.636506
115R:R:Y590 5.6125405
116R:R:T591 2.324287
117R:R:T595 3.9975407
118R:R:W602 5.2275404
119R:R:F605 4.4625499
120R:R:F608 4.5954294
121R:R:W612 4.195409
122R:R:G622 2.55254308
123R:R:L635 3.65254135
124R:R:F662 5.8554134
125R:R:F670 5.9554133
126R:R:P680 10.234157
127R:R:L681 3.4406
128R:R:P691 3.982599
129R:R:L692 4.8575407
130R:R:P695 5.64254159
131R:R:F696 4.7585157
132R:R:F706 7.473336155
133R:R:N714 4.99409
134R:R:M721 4.586507
135R:R:I724 2.2525406
136R:R:Y725 5.2345318
137R:R:N756 4.1525409
138R:R:F759 4.95169
139R:R:F766 5.07254329
140R:R:I777 4.084326
141R:R:F790 4.784505
142R:R:N797 5.815409
143R:R:Y801 7.48754129
144R:R:F808 4.0425457
145R:R:W812 4.568555
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:G90 R:R:N115 59.69221.7NoNo099
2R:R:A89 R:R:G90 37.89531.95NoNo099
3R:R:A89 R:R:Q113 31.18467.58NoYes099
4R:R:G90 R:R:N114 21.46721.7NoNo099
5R:R:I96 R:R:P121 10.78483.39NoYes098
6R:R:D137 R:R:Q113 20.81556.53YesYes199
7R:R:D137 R:R:W159 18.75272.23YesYes199
8R:R:A138 R:R:N114 21.13243.13NoNo099
9R:R:A138 R:R:D137 20.79924.63NoYes099
10R:R:N115 R:R:N139 65.10814.09NoYes099
11R:R:I141 R:R:N139 32.86034.25YesYes399
12R:R:I125 R:R:P121 14.06673.39NoYes058
13R:R:F149 R:R:I125 14.21772.51NoNo2395
14R:R:H157 R:R:W159 12.02414.23NoYes199
15R:R:H157 R:R:R156 11.0244.51NoYes099
16R:R:D137 R:R:D161 22.20592.66YesNo099
17R:R:N139 R:R:N163 32.53574.09YesYes399
18R:R:I141 R:R:L165 35.49632.85YesYes399
19R:R:L165 R:R:N163 32.68974.12YesYes399
20R:R:F149 R:R:L158 14.5437.31NoNo099
21R:R:L158 R:R:L182 14.854.15NoYes098
22R:R:L160 R:R:L165 68.50375.54NoYes099
23R:R:L160 R:R:L184 68.65864.15NoNo099
24R:R:L182 R:R:L184 73.81336.92YesNo089
25R:R:T183 R:R:W159 14.15544.85NoYes099
26R:R:D161 R:R:L186 20.859613.57NoNo099
27R:R:H207 R:R:V205 11.10736.92YesNo099
28R:R:H207 R:R:T183 13.14715.48YesNo099
29R:R:L182 R:R:L206 89.2274.15YesNo089
30R:R:H209 R:R:L186 10.09142.57YesNo499
31R:R:L186 R:R:N210 10.0956.87NoNo499
32R:R:L206 R:R:L230 89.68054.15NoYes099
33R:R:R275 R:R:T276 14.12332.59NoNo058
34R:R:H256 R:R:H278 12.11092.39YesYes498
35R:R:L230 R:R:L250 91.11474.15YesYes099
36R:R:L250 R:R:L253 73.55665.54YesYes099
37R:R:F268 R:R:L253 36.81813.65YesYes099
38R:R:L250 R:R:N271 18.79424.12YesYes099
39R:R:F255 R:R:L253 18.46574.87YesYes099
40R:R:L253 R:R:L274 18.3984.15YesNo099
41R:R:L274 R:R:N271 19.18452.75NoYes099
42R:R:F255 R:R:I277 23.89972.51YesYes098
43R:R:F268 R:R:I277 19.29323.77YesYes098
44R:R:I277 R:R:L274 37.57742.85YesNo089
45R:R:F268 R:R:L295 19.29442.44YesNo099
46R:R:I277 R:R:L298 80.73312.85YesNo089
47R:R:L295 R:R:L298 19.31086.92NoNo099
48R:R:L298 R:R:L321 1004.15NoYes098
49R:R:L301 R:R:L321 10.36192.77YesYes1498
50R:R:N353 R:R:N375 12.46694.09YesYes299
51R:R:N375 R:R:N399 12.06394.09YesYes299
52R:R:N399 R:R:N423 11.85974.09YesYes299
53R:R:N423 R:R:N444 19.16774.09YesNo099
54R:R:G443 R:R:N444 26.3681.7NoNo089
55R:R:F422 R:R:G443 25.80584.52NoNo048
56R:R:F422 R:R:R398 25.27614.97NoNo045
57R:R:R398 R:R:S397 17.77432.64NoYes058
58R:R:D419 R:R:S397 10.91338.83YesYes698
59R:R:D419 R:R:K440 13.29436.91YesNo098
60R:R:K440 R:R:Q438 12.59514.07NoNo089
61R:R:N417 R:R:Q438 11.19649.24NoNo079
62R:R:L321 R:R:L324 83.814.15YesYes1489
63R:R:L324 R:R:L345 41.93284.15YesNo1499
64R:R:L345 R:R:L367 41.87052.77NoYes1497
65R:R:I370 R:R:L367 83.32595.71NoYes077
66R:R:I370 R:R:L394 79.99252.85NoYes077
67R:R:F385 R:R:L394 11.07767.31YesYes097
68R:R:L324 R:R:L348 41.93282.77YesNo1499
69R:R:L348 R:R:L367 41.87052.77NoYes1497
70R:R:L394 R:R:L418 69.23614.15YesYes079
71R:R:L418 R:R:L439 58.87924.15YesYes1098
72R:R:L439 R:R:L462 57.74824.15YesYes087
73R:R:L462 R:R:V464 57.06255.96YesYes077
74R:R:P524 R:R:V464 55.00013.53YesYes797
75R:R:Q373 R:R:S351 10.94095.78YesNo689
76R:R:A467 R:R:P524 51.471.87NoYes099
77R:R:A467 R:R:K530 51.32021.61NoNo098
78R:R:K530 R:R:Y468 51.01248.36NoYes989
79R:R:P691 R:R:Y468 49.77244.17YesYes999
80R:R:L535 R:R:P691 42.25453.28YesYes999
81R:R:L535 R:R:L692 33.95212.77YesYes097
82R:R:L594 R:R:L692 33.54782.77NoYes097
83R:R:L594 R:R:Y590 33.39454.69NoYes095
84R:R:M587 R:R:Y590 25.86532.39YesYes065
85R:R:A794 R:R:M587 19.45053.22NoYes086
86R:R:A794 R:R:N584 19.29236.25NoNo089
87R:R:N584 R:R:N797 10.80344.09NoYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8WVW
Class A
SubFamily Orphan
Type Orphan
SubType LGR4
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.53
Date 2024-10-30
D.O.I. To be published
Net Summary
Imin 1.7
Number of Linked Nodes 669
Number of Links 833
Number of Hubs 145
Number of Links mediated by Hubs 495
Number of Communities 32
Number of Nodes involved in Communities 206
Number of Links involved in Communities 271
Path Summary
Number Of Nodes in MetaPath 88
Number Of Links MetaPath 87
Number of Shortest Paths 4270611
Length Of Smallest Path 3
Average Path Length 38.3417
Length of Longest Path 61
Minimum Path Strength 1.23
Average Path Strength 4.41728
Maximum Path Strength 20.44
Minimum Path Correlation 0.73
Average Path Correlation 0.998433
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 7.69231
Average % Of Corr. Nodes 48.1753
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 54.5094
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• multicellular organismal process   • tissue remodeling   • bone remodeling   • developmental process   • epithelium development   • cell population proliferation   • tube development   • morphogenesis of an epithelium   • tissue development   • renal system development   • epithelial cell proliferation involved in renal tubule morphogenesis   • tissue morphogenesis   • anatomical structure morphogenesis   • multicellular organism development   • tube morphogenesis   • anatomical structure development   • renal tubule development   • cellular process   • epithelial tube morphogenesis   • epithelial cell proliferation   • renal tubule morphogenesis   • system development   • cellular developmental process   • ossification   • cell differentiation   • osteoblast differentiation   • cellular response to stimulus   • positive regulation of response to biotic stimulus   • regulation of cellular process   • pattern recognition receptor signaling pathway   • response to stimulus   • toll-like receptor signaling pathway   • negative regulation of biological process   • regulation of signal transduction   • response to biotic stimulus   • cell communication   • immune response-activating signaling pathway   • positive regulation of immune response   • regulation of immune system process   • signal transduction   • positive regulation of immune system process   • innate immune response-activating signaling pathway   • regulation of biological process   • immune response   • response to other organism   • regulation of innate immune response   • response to external stimulus   • regulation of response to stimulus   • defense response to other organism   • regulation of pattern recognition receptor signaling pathway   • positive regulation of defense response   • activation of innate immune response   • regulation of immune response   • regulation of toll-like receptor signaling pathway   • activation of immune response   • regulation of defense response   • regulation of response to biotic stimulus   • biological process involved in interspecies interaction between organisms   • regulation of response to external stimulus   • signaling   • negative regulation of signaling   • positive regulation of biological process   • negative regulation of cell communication   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • immune response-regulating signaling pathway   • regulation of response to stress   • response to stress   • innate immune response   • negative regulation of cellular process   • response to external biotic stimulus   • regulation of signaling   • positive regulation of innate immune response   • defense response   • negative regulation of response to stimulus   • biological regulation   • defense response to symbiont   • negative regulation of signal transduction   • negative regulation of toll-like receptor signaling pathway   • negative regulation of immune system process   • immune system process   • regulation of cell communication   • spermatogenesis   • sexual reproduction   • reproductive process   • multicellular organismal reproductive process   • developmental process involved in reproduction   • male gamete generation   • gamete generation   • bone mineralization   • animal organ development   • biomineral tissue development   • mesonephric epithelium development   • kidney epithelium development   • branching morphogenesis of an epithelial tube   • nephron tubule morphogenesis   • regulation of kidney development   • regulation of branching involved in ureteric bud morphogenesis   • positive regulation of developmental process   • animal organ morphogenesis   • nephron development   • regulation of morphogenesis of a branching structure   • regulation of animal organ morphogenesis   • positive regulation of multicellular organismal process   • mesonephric tubule development   • regulation of developmental process   • nephron morphogenesis   • nephron epithelium morphogenesis   • nephron tubule development   • ureteric bud morphogenesis   • positive regulation of morphogenesis of an epithelium   • branching involved in ureteric bud morphogenesis   • regulation of morphogenesis of an epithelium   • regulation of multicellular organismal process   • regulation of anatomical structure morphogenesis   • nephron epithelium development   • ureteric bud development   • mesonephros development   • kidney morphogenesis   • morphogenesis of a branching structure   • positive regulation of branching involved in ureteric bud morphogenesis   • mesonephric tubule morphogenesis   • kidney development   • morphogenesis of a branching epithelium   • digestive system development   • digestive tract development   • epidermis development   • molting cycle process   • hair cycle   • skin development   • skin epidermis development   • hair follicle development   • molting cycle   • hair cycle process   • genitalia development   • reproductive system development   • sex differentiation   • male sex differentiation   • male genitalia development   • reproductive structure development   • multicellular organismal-level homeostasis   • homeostatic process   • homeostasis of number of cells   • intestinal stem cell homeostasis   • regulation of biosynthetic process   • rhythmic process   • circadian regulation of gene expression   • circadian rhythm   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cytokine production   • regulation of cytokine production   • negative regulation of macromolecule metabolic process   • negative regulation of metabolic process   • negative regulation of cytokine production   • negative regulation of gene expression   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • negative regulation of multicellular organismal process   • metanephric tubule morphogenesis   • metanephric epithelium development   • metanephros development   • metanephros morphogenesis   • metanephric nephron tubule morphogenesis   • metanephric nephron development   • metanephric nephron epithelium development   • metanephric nephron tubule development   • metanephric nephron morphogenesis   • metanephric tubule development   • cell surface receptor signaling pathway   • Wnt signaling pathway   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of canonical Wnt signaling pathway   • canonical Wnt signaling pathway   • positive regulation of Wnt signaling pathway   • positive regulation of cellular process   • positive regulation of canonical Wnt signaling pathway   • regulation of Wnt signaling pathway   • positive regulation of signaling   • negative regulation of cold-induced thermogenesis   • adaptive thermogenesis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • metanephric glomerulus development   • glomerulus development   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .


This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XUMAOrphanOrphanLGR4Homo sapiensR-spondin-2--2.92025-01-15To be published
8XT9AOrphanOrphanLGR4Homo sapiens---3.12025-01-15To be published
8Y69AOrphanOrphanLGR4Homo sapiensR-spondin-2CholesterolZNRF33.382024-12-04To be published
8XFTAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.242024-12-04To be published
8XFSAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.22024-12-04To be published
8XFPAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.212024-12-04To be published
8WVYAOrphanOrphanLGR4Homo sapiensNorrin--3.292024-10-30To be published
8WVWAOrphanOrphanLGR4Homo sapiens---3.532024-10-30To be published
8WVVAOrphanOrphanLGR4Homo sapiens---3.352024-10-30To be published
8WVUAOrphanOrphanLGR4Homo sapiensR-spondin-1-RNF433.612024-10-30To be published
8WVXAOrphanOrphanLGR4Homo sapiensNorrin--3.322024-10-30To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8WVW.zip



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