Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.356921320
2R:R:Y65 5.626506
3R:R:N76 5.2725419
4R:R:Y96 5.73429707
5R:R:N99 7.9925459
6R:R:D104 6.835419
7R:R:V115 2.5575406
8R:R:W123 8.45429738
9R:R:C130 5.4875439
10R:R:N140 6.68407
11R:R:F142 6.586546
12R:R:Y146 6.368545
13R:R:L148 4.7925418
14R:R:R155 7.9675419
15R:R:Y156 6.49568
16R:R:I189 3.76507
17R:R:F195 5.176505
18R:R:F223 6.835426
19R:R:F232 7.5275408
20R:R:Y243 8.07667619
21R:R:Y276 11.554518
22R:R:F280 8.39419
23R:R:W284 11.1625418
24R:R:V290 3.56404
25R:R:Y313 8.798527
26R:R:N315 11.195419
27R:R:Y323 11.5825419
28R:R:F330 6.65508
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L114 18.803813.27YesNo006
2R:R:L114 R:R:Y65 17.61253.52NoYes066
3R:R:I310 R:R:Y65 10.598112.09NoYes046
4L:L:?1 R:R:V309 18.75935.1YesNo205
5R:R:V309 R:R:Y65 30.58826.31NoYes056
6R:R:V115 R:R:Y65 27.90413.79YesYes066
7R:R:S62 R:R:V115 17.61743.23NoYes066
8R:R:M108 R:R:Y313 25.49683.59NoYes067
9R:R:M108 R:R:N76 27.84974.21NoYes069
10R:R:D104 R:R:N76 27.9986.73YesYes199
11L:L:?1 R:R:M141 96.41138.71YesNo007
12R:R:M141 R:R:W284 96.76726.98NoYes078
13R:R:F280 R:R:W284 94.854219.04YesYes198
14R:R:F280 R:R:L148 97.13793.65YesYes198
15R:R:L148 R:R:Y323 1005.86YesYes189
16R:R:R155 R:R:Y323 92.25416.17YesYes199
17R:R:L151 R:R:R155 77.923913.36NoYes099
18R:R:L151 R:R:Y96 76.59915.86NoYes097
19R:R:D154 R:R:Y96 39.7389.2NoYes087
20R:R:D154 R:R:R169 38.65053.57NoNo086
21R:R:R169 R:R:T91 37.54823.88NoNo067
22R:R:N94 R:R:T91 36.4367.31NoNo087
23R:R:F330 R:R:N94 34.1727.25YesNo088
24R:R:F330 R:R:V82 17.11322.62YesNo087
25R:R:F330 R:R:I83 11.92296.28YesNo087
26R:R:N178 R:R:Y96 38.65056.98NoYes087
27R:R:N178 R:R:N99 37.54829.54NoYes089
28R:R:N99 R:R:T143 32.91154.39YesNo596
29R:R:D104 R:R:L100 29.89128.14YesNo199
30R:R:S185 R:R:T143 31.88836.4NoNo086
31R:R:S185 R:R:V139 15.65994.85NoNo085
32L:L:?1 R:R:L134 30.68714.74YesNo005
33R:R:C130 R:R:L134 25.65994.76YesNo095
34R:R:C130 R:R:W123 17.35546.53YesYes398
35R:R:F142 R:R:S185 15.54623.96YesNo068
36R:R:R155 R:R:Y243 47.60757.2YesYes199
37R:R:I239 R:R:Y243 14.90864.84NoYes189
38R:R:I239 R:R:T149 13.28237.6NoNo087
39R:R:Y276 R:R:Y323 37.439430.78YesYes189
40R:R:Y243 R:R:Y276 33.33669.93YesYes198
41R:R:S152 R:R:Y243 10.316411.45NoYes199
42R:R:I246 R:R:Y243 29.23882.42NoYes099
43R:R:I246 R:R:Y156 23.27242.42NoYes098
44R:R:H161 R:R:Y156 10.91948.71NoYes678
45L:L:?1 R:R:M210 18.83844.84YesNo204
46R:R:F195 R:R:M210 18.82353.73YesNo054
47L:L:?1 R:R:F223 24.29563.34YesYes206
48R:R:F223 R:R:T227 23.08957.78YesNo065
49L:L:?1 R:R:L220 11.58181.9YesNo005
50R:R:T227 R:R:Y288 21.72026.24NoNo057
51R:R:F228 R:R:Y288 20.341115.47NoNo057
52R:R:F228 R:R:F232 17.55314.29NoYes058
53R:R:V273 R:R:Y243 29.466112.62NoYes079
54R:R:I247 R:R:V273 27.3951.54NoNo057
55R:R:I247 R:R:R251 17.18246.26NoNo055
56R:R:R251 R:R:T270 15.06672.59NoNo057
57R:R:R267 R:R:T270 10.82061.29NoNo047
58L:L:?1 R:R:F287 16.00110.84YesNo206
59R:R:F287 R:R:S308 14.72573.96NoNo066
60R:R:S308 R:R:V290 13.29714.85NoYes064
61R:R:S62 R:R:T118 10.58821.6NoNo064
62R:R:V309 R:R:Y313 13.89033.79NoYes257
63R:R:L100 R:R:Y323 29.67383.52NoYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L114 13.27 2 Yes No 0 6 0 1
L:L:?1 R:R:L134 4.74 2 Yes No 0 5 0 1
L:L:?1 R:R:D137 21.38 2 Yes No 0 6 0 1
L:L:?1 R:R:M141 8.71 2 Yes No 0 7 0 1
L:L:?1 R:R:M210 4.84 2 Yes No 0 4 0 1
L:L:?1 R:R:F223 3.34 2 Yes Yes 0 6 0 1
L:L:?1 R:R:F287 10.84 2 Yes No 0 6 0 1
L:L:?1 R:R:Q291 7.29 2 Yes No 0 6 0 1
L:L:?1 R:R:V309 5.1 2 Yes No 0 5 0 1
L:L:?1 R:R:Y313 23.29 2 Yes Yes 0 7 0 1
R:R:L114 R:R:Y65 3.52 0 No Yes 6 6 1 2
R:R:V309 R:R:Y65 6.31 2 No Yes 5 6 1 2
R:R:M108 R:R:Y313 3.59 0 No Yes 6 7 2 1
R:R:V111 R:R:Y313 7.57 2 No Yes 7 7 2 1
R:R:C130 R:R:L134 4.76 3 Yes No 9 5 2 1
R:R:L134 R:R:S196 4.5 0 No No 5 5 1 2
R:R:D137 R:R:Y313 5.75 2 No Yes 6 7 1 1
R:R:M141 R:R:W284 6.98 0 No Yes 7 8 1 2
R:R:F223 R:R:I192 5.02 2 Yes No 6 5 1 2
R:R:F195 R:R:M210 3.73 0 Yes No 5 4 2 1
R:R:F223 R:R:M210 11.2 2 Yes No 6 4 1 1
R:R:L220 R:R:V295 8.94 0 No No 5 4 1 2
R:R:F223 R:R:T227 7.78 2 Yes No 6 5 1 2
R:R:F287 R:R:Q291 5.86 2 No No 6 6 1 1
R:R:F287 R:R:S308 3.96 2 No No 6 6 1 2
R:R:V309 R:R:Y313 3.79 2 No Yes 5 7 1 1
R:R:L211 R:R:N209 2.75 0 No No 4 5 2 1
L:L:?1 R:R:S110 2.06 2 Yes No 0 6 0 1
L:L:?1 R:R:L220 1.9 2 Yes No 0 5 0 1
L:L:?1 R:R:N209 1.88 2 Yes No 0 5 0 1
R:R:A216 R:R:L220 1.58 0 No No 3 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XIO_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.28
Number of Linked Nodes 252
Number of Links 275
Number of Hubs 28
Number of Links mediated by Hubs 121
Number of Communities 7
Number of Nodes involved in Communities 47
Number of Links involved in Communities 61
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 42906
Length Of Smallest Path 3
Average Path Length 13.5747
Length of Longest Path 28
Minimum Path Strength 1.335
Average Path Strength 6.89172
Maximum Path Strength 20.355
Minimum Path Correlation 0.7
Average Path Correlation 0.920531
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 44.192
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.6234
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • developmental process   • multicellular organismal process   • head development   • forebrain development   • animal organ development   • brain development   • nervous system development   • multicellular organism development   • central nervous system development   • anatomical structure development   • system development   • spermatogenesis   • sexual reproduction   • reproductive process   • multicellular organismal reproductive process   • developmental process involved in reproduction   • male gamete generation   • gamete generation   • negative regulation of cell population proliferation   • cell population proliferation   • regulation of cell population proliferation   • negative regulation of cellular process   • negative regulation of biological process   • response to lipid   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to chemical   • cellular response to lipid   • response to estradiol   • cellular response to estradiol stimulus   • cell surface receptor signaling pathway   • glutamate receptor signaling pathway   • cerebellum development   • metencephalon development   • hindbrain development   • response to peptide   • response to cytokine   • response to leukemia inhibitory factor   • cellular response to cytokine stimulus   • cellular response to leukemia inhibitory factor   • response to nutrient levels   • response to stress   • response to starvation   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • cell projection   • neuron projection   • plasma membrane bounded cell projection   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • sensory organ development   • eye development   • retina development in camera-type eye   • visual system development   • camera-type eye development   • sensory system development   • response to ketone   • response to prostaglandin   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1D
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP30872
Sequence
>8XIO_nogp_Chain_R
EGQGSAILI SFIYSVVCL VGLCGNSMV IYVILRYAK MKTATNIYI 
LNLAIADEL LMLSVPFLV TSTLLRHWP FGALLCRLV LSVDAVNMF 
TSIYCLTVL SVDRYVAVV HPIKAARYR RPTVAKVVN LGVWVLSLL 
VILPIVVFS RTAANSDGT VACNMLMPE PAQRWLVGF VLYTFLMGF 
LLPVGAICL CYVLIIAKM RMVALKAGW QQRKRSERK ITLMVMMVM 
VFVICWMPF YVVQLVNVF AEQDDATVS QLSVILGYA NSCANPILY 
GFLSDNFKR SFQRY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XIPAPeptideSomatostatinSST1Homo sapiensPasireotide-chim(NtGi1-Gs-CtGi1)/β1/γ23.292024-07-03doi.org/10.1073/pnas.2400298121
8XIP (No Gprot) APeptideSomatostatinSST1Homo sapiensPasireotide-3.292024-07-03doi.org/10.1073/pnas.2400298121
8XIOAPeptideSomatostatinSST1Homo sapiensL797591-chim(NtGi1-Gs-CtGi1)/β1/γ22.652024-07-03doi.org/10.1073/pnas.2400298121
8XIO (No Gprot) APeptideSomatostatinSST1Homo sapiensL797591-2.652024-07-03doi.org/10.1073/pnas.2400298121




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XIO_nogp.zip



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