Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.355610
2L:L:?2 11.1817610
3L:L:K3 13.305410
4L:L:?4 8.08556910
5L:L:?6 11.5675410
6R:R:Y65 6.425406
7R:R:Y96 5.67333667
8R:R:N99 8.05479
9R:R:D104 5.41549
10R:R:E105 6.365407
11R:R:M108 3.5025416
12R:R:V111 4.2975417
13R:R:W123 8.41588
14R:R:D137 7.2375416
15R:R:T143 7.685476
16R:R:R155 7.4075429
17R:R:Y156 8.22254118
18R:R:V160 4.39254117
19R:R:I189 3.6275407
20R:R:P213 4.3054124
21R:R:P215 4.4854122
22R:R:F232 3.9525408
23R:R:P235 3.5575409
24R:R:Y243 7.21429
25R:R:Y276 8.408528
26R:R:W284 9.794108
27R:R:M285 3.9125405
28R:R:S305 3.65434
29R:R:Y313 6.964517
30R:R:N315 7.45754109
31R:R:Y323 9.26429
32R:R:F330 3.79608
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:?2 31.774316.88YesYes100
2L:L:?2 L:L:K3 23.632127.98YesYes100
3L:L:?4 R:R:L114 11.690718.17YesNo006
4L:L:?4 R:R:S117 15.53658.62YesNo006
5L:L:?1 L:L:?6 11.97425.42YesYes100
6L:L:?6 L:L:F5 23.497411.07YesNo000
7L:L:F5 R:R:S305 15.14635.28NoYes004
8L:L:K3 R:R:Y313 27.94249.55YesYes107
9R:R:L107 R:R:Y313 18.179311.72NoYes077
10R:R:L107 R:R:M108 10.79424.24NoYes076
11R:R:G72 R:R:M108 12.23873.49NoYes186
12R:R:V111 R:R:Y313 15.16023.79YesYes177
13R:R:M108 R:R:V111 10.72923.04YesYes167
14L:L:?2 R:R:M141 99.31723.37YesNo007
15R:R:I145 R:R:M141 96.09854.37NoNo077
16R:R:I145 R:R:P235 1003.39NoYes079
17R:R:P235 R:R:T149 99.60523.5YesNo097
18R:R:I239 R:R:T149 99.38233.04NoNo087
19R:R:I239 R:R:S152 99.256910.84NoNo089
20R:R:S152 R:R:Y243 99.12225.09NoYes099
21R:R:R155 R:R:Y243 62.37346.17YesYes299
22R:R:R155 R:R:Y323 20.91045.14YesYes299
23R:R:L148 R:R:Y323 35.02559.38NoYes289
24R:R:L100 R:R:L148 33.23735.54NoNo098
25R:R:D104 R:R:L100 31.35626.79YesNo099
26R:R:Y243 R:R:Y276 36.41434.96YesYes298
27R:R:Y276 R:R:Y323 17.830917.87YesYes289
28R:R:D104 R:R:P320 15.78733.22YesNo499
29R:R:P320 R:R:V79 14.00841.77NoNo099
30R:R:M272 R:R:Y276 27.70557.18NoYes088
31R:R:L326 R:R:M272 24.514.24NoNo068
32R:R:I321 R:R:L326 23.50672.85NoNo076
33R:R:F325 R:R:I321 21.31447.54NoNo067
34R:R:F325 R:R:F334 20.20445.36NoNo065
35R:R:F330 R:R:F334 13.27914.29YesNo085
36R:R:L151 R:R:R155 60.325112.15NoYes099
37R:R:L151 R:R:Y96 59.61455.86NoYes097
38R:R:D154 R:R:Y96 26.78595.75NoYes087
39R:R:N178 R:R:Y96 29.94435.81NoYes087
40R:R:N178 R:R:N99 28.908510.9NoYes089
41R:R:N99 R:R:T143 24.5754.39YesYes796
42R:R:S117 R:R:W123 14.28246.18NoYes068
43R:R:A207 R:R:N209 17.42223.13NoNo055
44R:R:A207 R:R:N201 15.27644.69NoNo053
45R:R:S185 R:R:T143 22.49884.8NoYes086
46R:R:S185 R:R:Y146 21.39816.36NoNo085
47R:R:F142 R:R:Y146 20.2884.13NoNo065
48R:R:F142 R:R:I189 18.03995.02NoYes067
49R:R:I189 R:R:S135 13.43241.55YesNo076
50R:R:S135 R:R:V193 12.25736.46NoNo064
51R:R:D154 R:R:R169 25.72229.53NoNo086
52R:R:A158 R:R:R169 23.56715.53NoNo086
53R:R:A158 R:R:V159 22.47561.7NoNo088
54R:R:I246 R:R:V159 21.37023.07NoNo098
55R:R:I246 R:R:V160 20.27873.07NoYes097
56R:R:V160 R:R:Y156 13.33028.83YesYes1178
57L:L:?1 R:R:L220 21.17513.36YesNo005
58R:R:L220 R:R:M212 10.13937.07NoNo054
59R:R:L220 R:R:V295 10.13935.96NoNo054
60L:L:?2 R:R:Q291 22.89837.4YesNo006
61R:R:F287 R:R:Q291 21.788215.23NoNo066
62R:R:F287 R:R:Y288 19.36374.13NoNo067
63R:R:F228 R:R:Y288 18.137513.41NoNo057
64R:R:F228 R:R:F232 16.9023.22NoYes058
65L:L:?2 L:L:?4 42.97723.61YesYes100
66L:L:?4 L:L:?6 15.62475.16YesYes100
67L:L:?4 R:R:N209 11.00334.51YesNo105
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:N209 6.66 1 Yes No 0 5 0 1
L:L:?1 R:R:M210 5.71 1 Yes No 0 4 0 1
L:L:?1 R:R:L220 3.36 1 Yes No 0 5 0 1
L:L:?2 R:R:M141 3.37 1 Yes No 0 7 0 1
L:L:?2 R:R:M210 7.85 1 Yes No 0 4 0 1
L:L:?2 R:R:Q291 7.4 1 Yes No 0 6 0 1
L:L:K3 R:R:D137 11.06 1 Yes Yes 0 6 0 1
L:L:K3 R:R:Y313 9.55 1 Yes Yes 0 7 0 1
L:L:?4 R:R:L114 18.17 1 Yes No 0 6 0 1
L:L:?4 R:R:S117 8.62 1 Yes No 0 6 0 1
L:L:?4 R:R:L134 7.95 1 Yes No 0 5 0 1
L:L:?4 R:R:D137 10.02 1 Yes Yes 0 6 0 1
L:L:?4 R:R:N209 4.51 1 Yes No 0 5 0 1
L:L:F5 R:R:S305 5.28 0 No Yes 0 4 0 1
L:L:F5 R:R:Q306 5.86 0 No No 0 4 0 1
L:L:?6 R:R:D300 4.62 1 Yes No 0 4 0 1
R:R:I61 R:R:Q306 5.49 0 No No 5 4 2 1
R:R:L114 R:R:Y65 3.52 0 No Yes 6 6 1 2
R:R:V309 R:R:Y65 7.57 0 No Yes 5 6 2 2
R:R:L107 R:R:Y313 11.72 0 No Yes 7 7 2 1
R:R:D137 R:R:S110 4.42 1 Yes No 6 6 1 2
R:R:V111 R:R:Y313 3.79 1 Yes Yes 7 7 2 1
R:R:S117 R:R:W123 6.18 0 No Yes 6 8 1 2
R:R:L134 R:R:S196 7.51 0 No No 5 5 1 2
R:R:C208 R:R:L134 3.17 0 No No 9 5 2 1
R:R:D137 R:R:Y313 3.45 1 Yes Yes 6 7 1 1
R:R:I145 R:R:M141 4.37 0 No No 7 7 2 1
R:R:M141 R:R:W284 8.14 0 No Yes 7 8 1 2
R:R:A207 R:R:N209 3.13 0 No No 5 5 2 1
R:R:F223 R:R:M210 6.22 0 No No 6 4 2 1
R:R:L220 R:R:M212 7.07 0 No No 5 4 1 2
R:R:L220 R:R:V295 5.96 0 No No 5 4 1 2
R:R:F287 R:R:Q291 15.23 0 No No 6 6 2 1
R:R:N294 R:R:V290 4.43 3 No No 4 4 2 2
R:R:S305 R:R:V290 3.23 3 Yes No 4 4 1 2
R:R:N294 R:R:S305 4.47 3 No Yes 4 4 2 1
R:R:Q306 R:R:T303 4.25 0 No No 4 2 1 2
R:R:V309 R:R:Y313 6.31 0 No Yes 5 7 2 1
R:R:L114 R:R:T118 2.95 0 No No 6 4 1 2
R:R:S305 R:R:V304 1.62 3 Yes No 4 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XIP_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.04
Number of Linked Nodes 265
Number of Links 285
Number of Hubs 32
Number of Links mediated by Hubs 122
Number of Communities 12
Number of Nodes involved in Communities 51
Number of Links involved in Communities 61
Path Summary
Number Of Nodes in MetaPath 68
Number Of Links MetaPath 67
Number of Shortest Paths 39603
Length Of Smallest Path 3
Average Path Length 15.3131
Length of Longest Path 33
Minimum Path Strength 1.3
Average Path Strength 6.24275
Maximum Path Strength 22.43
Minimum Path Correlation 0.7
Average Path Correlation 0.926745
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 49.5478
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 37.6892
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • developmental process   • multicellular organismal process   • head development   • forebrain development   • animal organ development   • brain development   • nervous system development   • multicellular organism development   • central nervous system development   • anatomical structure development   • system development   • spermatogenesis   • sexual reproduction   • reproductive process   • multicellular organismal reproductive process   • developmental process involved in reproduction   • male gamete generation   • gamete generation   • negative regulation of cell population proliferation   • cell population proliferation   • regulation of cell population proliferation   • negative regulation of cellular process   • negative regulation of biological process   • response to lipid   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to chemical   • cellular response to lipid   • response to estradiol   • cellular response to estradiol stimulus   • cell surface receptor signaling pathway   • glutamate receptor signaling pathway   • cerebellum development   • metencephalon development   • hindbrain development   • response to peptide   • response to cytokine   • response to leukemia inhibitory factor   • cellular response to cytokine stimulus   • cellular response to leukemia inhibitory factor   • response to nutrient levels   • response to stress   • response to starvation   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • cell projection   • neuron projection   • plasma membrane bounded cell projection   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • sensory organ development   • eye development   • retina development in camera-type eye   • visual system development   • camera-type eye development   • sensory system development   • response to ketone   • response to prostaglandin   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code004
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code004
Name(2S)-amino(phenyl)ethanoic acid
SynonymsL-Phenylglycine
Identifier
FormulaC8 H9 N O2
Molecular Weight151.163
SMILES
PubChem6931074
Formal Charge0
Total Atoms20
Total Chiral Atoms1
Total Bonds20
Total Aromatic Bonds6

CodeDTR
PDB ResiduesL:L:?2
Environment DetailsOpen EMBL-EBI Page
CodeDTR
NameD-Tryptophan
Synonyms
  • (2R)-2-amino-3-(1H-indol-3-yl)propanoic acid
  • DTR
  • D-Tryptophan
  • (R)-tryptophan
Identifier
FormulaC11 H12 N2 O2
Molecular Weight204.225
SMILES
PubChem6923517
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds10

CodeTY5
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeTY5
NameO-benzyl-L-tyrosine
Synonyms
Identifier
FormulaC16 H17 N O3
Molecular Weight271.311
SMILES
PubChem725701
Formal Charge0
Total Atoms37
Total Chiral Atoms1
Total Bonds38
Total Aromatic Bonds12

CodeA1D
PDB ResiduesL:L:?6
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP30872
Sequence
>8XIP_nogp_Chain_R
SEGQGSAIL ISFIYSVVC LVGLCGNSM VIYVILRYA KMKTATNIY 
ILNLAIADE LLMLSVPFL VTSTLLRHW PFGALLCRL VLSVDAVNM 
FTSIYCLTV LSVDRYVAV VHPIKAARY RRPTVAKVV NLGVWVLSL 
LVILPIVVF SRTAANSDG TVACNMLMP EPAQRWLVG FVLYTFLMG 
FLLPVGAIC LCYVLIIAK MRMVALKAG WQQRKRSER KITLMVMMV 
MVFVICWMP FYVVQLVNV FAEQDDATV SQLSVILGY ANSCANPIL 
YGFLSDNFK RSFQRY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XIPAPeptideSomatostatinSST1Homo sapiensPasireotide-chim(NtGi1-Gs-CtGi1)/β1/γ23.292024-07-03doi.org/10.1073/pnas.2400298121
8XIP (No Gprot) APeptideSomatostatinSST1Homo sapiensPasireotide-3.292024-07-03doi.org/10.1073/pnas.2400298121
8XIOAPeptideSomatostatinSST1Homo sapiensL797591-chim(NtGi1-Gs-CtGi1)/β1/γ22.652024-07-03doi.org/10.1073/pnas.2400298121
8XIO (No Gprot) APeptideSomatostatinSST1Homo sapiensL797591-2.652024-07-03doi.org/10.1073/pnas.2400298121




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XIP_nogp.zip



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