Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.0787810
2L:L:K2 13.93410
3L:L:?3 12.3488810
4L:L:?4 19.342510
5L:L:?6 14.39610
6R:R:Y65 7.41506
7R:R:I80 4.7825437
8R:R:I95 4.2405
9R:R:Y96 6.95607
10R:R:S110 4.755416
11R:R:V111 4.8407
12R:R:L114 9.6375416
13R:R:W123 4.96857718
14R:R:F142 6.00333616
15R:R:T143 7.3775406
16R:R:L148 5.0425418
17R:R:Y156 7.1925458
18R:R:V160 5.5325457
19R:R:H161 3.798557
20R:R:I189 4.38407
21R:R:F195 9.89425
22R:R:M212 10.396524
23R:R:F232 5.28418
24R:R:P235 3.5575409
25R:R:Y243 5.2225409
26R:R:F280 4.532519
27R:R:W284 6.57286718
28R:R:Y288 6.77417
29R:R:Y313 3.87517
30R:R:N319 4.982519
31R:R:L322 4.415418
32R:R:Y323 5.955619
33R:R:F330 9.635408
34R:R:S333 3.5175405
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:?6 28.404116.88YesYes100
2L:L:?4 L:L:?6 10.79810.57YesYes100
3L:L:?1 L:L:K2 68.84826.86YesYes100
4L:L:?3 L:L:K2 66.28519.67YesYes100
5L:L:?1 R:R:F223 23.1463.87YesNo006
6R:R:F223 R:R:I192 21.42865.02NoNo065
7R:R:I192 R:R:L134 21.15554.28NoNo055
8L:L:?5 L:L:?6 13.642821.55NoYes100
9L:L:?5 R:R:E298 21.551925.53NoNo001
10L:L:?3 R:R:Y313 59.95243.85YesYes107
11R:R:V111 R:R:Y313 38.9733.79YesYes077
12R:R:V111 R:R:Y65 29.0035.05YesYes076
13R:R:V115 R:R:Y65 10.877217.66NoYes066
14R:R:M108 R:R:Y313 26.67783.59NoYes167
15R:R:G72 R:R:M108 13.37853.49NoNo186
16R:R:G72 R:R:V71 10.87721.84NoNo085
17R:R:C317 R:R:M108 10.70113.24NoNo176
18L:L:?1 R:R:M141 63.75735.61YesNo107
19R:R:M141 R:R:W284 1009.31NoYes178
20R:R:N315 R:R:W284 37.30847.91NoYes098
21R:R:N315 R:R:N319 35.67025.45NoYes099
22R:R:D104 R:R:N319 86.25154.04NoYes099
23R:R:D104 R:R:N76 84.666220.2NoNo099
24R:R:N76 R:R:P320 76.950911.4NoNo099
25R:R:P320 R:R:V79 70.97943.53NoNo099
26R:R:F330 R:R:V79 56.42956.55YesNo089
27R:R:A101 R:R:V79 15.0523.39NoNo099
28R:R:A101 R:R:I80 12.58593.25NoYes097
29R:R:F330 R:R:V82 45.508213.11YesNo087
30R:R:S333 R:R:V82 17.50043.23YesNo057
31L:L:?1 R:R:F142 44.70673.87YesYes106
32R:R:F142 R:R:S185 68.6635.28YesNo068
33R:R:S185 R:R:T143 63.88943.2NoYes086
34R:R:T143 R:R:W182 47.965518.19YesNo069
35R:R:N99 R:R:W182 46.010212.43NoNo099
36R:R:N178 R:R:N99 42.117317.71NoNo089
37R:R:N178 R:R:Y96 28.28083.49NoYes087
38R:R:I83 R:R:V82 27.11823.07NoNo077
39R:R:I83 R:R:I97 24.74022.94NoNo078
40R:R:I97 R:R:T93 22.34453.04NoNo088
41R:R:T91 R:R:T93 19.93131.57NoNo078
42R:R:N94 R:R:T91 12.58592.92NoNo087
43R:R:I95 R:R:N178 17.35074.25YesNo058
44R:R:V150 R:R:Y96 13.29058.83NoYes067
45R:R:F280 R:R:W284 56.53515.01YesYes198
46R:R:F280 R:R:L148 27.61144.87YesYes198
47R:R:N319 R:R:Y323 44.17835.81YesYes199
48R:R:L107 R:R:Y313 64.70853.52NoYes077
49R:R:L107 R:R:S316 64.57644.5NoNo078
50L:L:?3 R:R:D137 23.10213.36YesNo106
51R:R:D137 R:R:S110 36.28688.83NoYes166
52R:R:F113 R:R:S110 13.78373.96NoYes156
53R:R:F113 R:R:F125 11.63476.43NoNo057
54R:R:S110 R:R:V133 18.17863.23YesNo165
55R:R:V133 R:R:W123 16.24986.13NoYes158
56L:L:?3 R:R:L134 43.48254.54YesNo005
57R:R:L134 R:R:S196 59.13333NoNo055
58R:R:R131 R:R:S196 55.79533.95NoNo065
59R:R:R131 R:R:R197 49.06646.4NoNo064
60R:R:F142 R:R:I189 14.47075.02YesYes067
61R:R:T143 R:R:V181 13.24644.76YesNo067
62R:R:I145 R:R:W284 10.345.87NoYes178
63R:R:I145 R:R:P235 10.04933.39NoYes079
64R:R:V181 R:R:Y146 10.63066.31NoNo075
65R:R:F280 R:R:I239 61.15033.77YesNo098
66R:R:V150 R:R:V177 10.66584.81NoNo065
67R:R:I239 R:R:S152 57.01969.29NoNo089
68R:R:C242 R:R:S152 60.95655.16NoNo079
69R:R:S152 R:R:Y243 38.84975.09NoYes099
70R:R:D154 R:R:Y96 15.536410.34NoYes087
71R:R:D154 R:R:R169 14.937513.1NoNo086
72R:R:C242 R:R:Y156 55.77774.03NoYes078
73R:R:V160 R:R:Y156 20.83858.83YesYes578
74R:R:H161 R:R:Y156 27.0836.53YesYes578
75R:R:H161 R:R:V157 19.01532.77YesNo075
76R:R:A165 R:R:V157 16.38193.39NoNo065
77R:R:A165 R:R:R169 14.88462.77NoNo066
78R:R:I95 R:R:P171 11.95171.69YesNo053
79R:R:F195 R:R:R197 45.67552.14YesNo054
80R:R:F195 R:R:M212 24.713821.15YesYes254
81R:R:F195 R:R:P213 14.11845.78YesNo254
82R:R:M212 R:R:W219 10.692312.8YesNo242
83R:R:P213 R:R:W219 10.6138.11NoNo242
84R:R:P215 R:R:W219 14.22412.7NoNo022
85L:L:?1 R:R:T227 13.6785.85YesNo105
86R:R:T227 R:R:Y288 18.67184.99NoYes157
87R:R:F228 R:R:Y288 10.70115.16NoYes057
88R:R:F232 R:R:W284 15.03435.01YesYes188
89R:R:F232 R:R:Y288 11.74928.25YesYes187
90R:R:F232 R:R:V236 11.0715.24YesNo086
91R:R:V273 R:R:Y243 40.37345.05NoYes079
92R:R:I247 R:R:V273 33.17776.14NoNo057
93R:R:I247 R:R:R251 28.38656.26NoNo055
94R:R:K249 R:R:V160 13.39624.55NoYes067
95R:R:K249 R:R:V253 10.21674.55NoNo066
96R:R:E266 R:R:R251 25.86759.3NoNo065
97R:R:A254 R:R:E266 15.83583.02NoNo046
98R:R:A254 R:R:Q260 13.24644.55NoNo041
99R:R:L322 R:R:Y323 15.46594.69YesYes189
100R:R:E298 R:R:N294 19.226711.83NoNo014
101R:R:N294 R:R:V290 14.52354.43NoNo044
102R:R:S308 R:R:V290 12.14554.85NoNo064
103R:R:F232 R:R:V281 16.54922.62YesNo085
104R:R:I282 R:R:V281 12.43611.54NoNo055
105R:R:C240 R:R:V236 10.17261.71NoNo046
106L:L:?4 L:L:?5 10.207951.09YesNo100
107L:L:?3 L:L:?4 19.869616.98YesYes100
108R:R:D104 R:R:S316 64.955111.78NoNo098
109R:R:R155 R:R:Y323 36.19877.2NoYes099
110R:R:F142 R:R:M141 36.42776.22YesNo167
111R:R:L148 R:R:N319 19.33244.12YesYes189
112R:R:R155 R:R:Y243 34.51658.23NoYes099
113R:R:D137 R:R:Y313 15.19294.6NoYes167
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:M141 5.61 1 Yes No 0 7 0 1
L:L:?1 R:R:F142 3.87 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F223 3.87 1 Yes No 0 6 0 1
L:L:?1 R:R:T227 5.85 1 Yes No 0 5 0 1
L:L:?1 R:R:F287 7.73 1 Yes No 0 6 0 1
L:L:?1 R:R:Q291 17.96 1 Yes No 0 6 0 1
L:L:K2 R:R:L114 4.23 1 Yes Yes 0 6 0 1
L:L:K2 R:R:F287 4.96 1 Yes No 0 6 0 1
L:L:?3 R:R:L114 28.39 1 Yes Yes 0 6 0 1
L:L:?3 R:R:S117 8.62 1 Yes No 0 6 0 1
L:L:?3 R:R:L134 4.54 1 Yes No 0 5 0 1
L:L:?3 R:R:D137 13.36 1 Yes No 0 6 0 1
L:L:?3 R:R:N209 3.38 1 Yes No 0 5 0 1
L:L:?3 R:R:Y313 3.85 1 Yes Yes 0 7 0 1
L:L:?4 R:R:A302 7.44 1 Yes No 0 4 0 1
L:L:?4 R:R:S305 10.63 1 Yes No 0 4 0 1
L:L:?5 R:R:E298 25.53 1 No No 0 1 0 1
L:L:?6 R:R:L220 15.67 1 Yes No 0 5 0 1
L:L:?6 R:R:V224 12.04 1 Yes No 0 5 0 1
L:L:?6 R:R:V295 9.63 1 Yes No 0 4 0 1
R:R:L107 R:R:Y313 3.52 0 No Yes 7 7 2 1
R:R:M108 R:R:Y313 3.59 1 No Yes 6 7 2 1
R:R:D137 R:R:S110 8.83 1 No Yes 6 6 1 2
R:R:V111 R:R:Y313 3.79 0 Yes Yes 7 7 2 1
R:R:I192 R:R:L134 4.28 0 No No 5 5 2 1
R:R:D137 R:R:Y313 4.6 1 No Yes 6 7 1 1
R:R:F142 R:R:M141 6.22 1 Yes No 6 7 1 1
R:R:M141 R:R:W284 9.31 1 No Yes 7 8 1 2
R:R:F142 R:R:S185 5.28 1 Yes No 6 8 1 2
R:R:F142 R:R:V188 6.55 1 Yes No 6 5 1 2
R:R:F142 R:R:I189 5.02 1 Yes Yes 6 7 1 2
R:R:F142 R:R:T227 9.08 1 Yes No 6 5 1 1
R:R:F223 R:R:I192 5.02 0 No No 6 5 1 2
R:R:L220 R:R:Q217 3.99 0 No No 5 1 1 2
R:R:V221 R:R:V295 4.81 0 No No 2 4 2 1
R:R:Q291 R:R:V224 4.3 1 No No 6 5 1 1
R:R:T227 R:R:Y288 4.99 1 No Yes 5 7 1 2
R:R:W284 R:R:Y288 8.68 1 Yes Yes 8 7 2 2
R:R:F287 R:R:Q291 12.88 1 No No 6 6 1 1
R:R:E298 R:R:N294 11.83 0 No No 1 4 1 2
R:R:F296 R:R:V295 6.55 0 No No 4 4 2 1
R:R:L134 R:R:S196 3 0 No No 5 5 1 2
R:R:L114 R:R:V309 2.98 1 Yes No 6 5 1 2
R:R:L114 R:R:T118 2.95 1 Yes No 6 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9IK8_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.23
Number of Linked Nodes 259
Number of Links 291
Number of Hubs 34
Number of Links mediated by Hubs 140
Number of Communities 5
Number of Nodes involved in Communities 51
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 114
Number Of Links MetaPath 113
Number of Shortest Paths 40885
Length Of Smallest Path 3
Average Path Length 12.3865
Length of Longest Path 28
Minimum Path Strength 1.225
Average Path Strength 7.35901
Maximum Path Strength 38.31
Minimum Path Correlation 0.7
Average Path Correlation 0.925202
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.55556
Average % Of Corr. Nodes 52.2456
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 37.5768
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeDTR
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeDTR
NameD-Tryptophan
Synonyms
  • D-Tryptophan
  • (2R)-2-amino-3-(1H-indol-3-yl)propanoic acid
  • (R)-tryptophan
  • DTR
Identifier
FormulaC11 H12 N2 O2
Molecular Weight204.225
SMILES
PubChem6923517
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds10

CodeTY5
PDB ResiduesL:L:?3
Environment DetailsOpen EMBL-EBI Page
CodeTY5
NameO-benzyl-L-tyrosine
Synonyms
Identifier
FormulaC16 H17 N O3
Molecular Weight271.311
SMILES
PubChem725701
Formal Charge0
Total Atoms37
Total Chiral Atoms1
Total Bonds38
Total Aromatic Bonds12

CodePHA
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodePHA
NamePHENYLALANINAL
Synonyms
Identifier
FormulaC9 H11 N O
Molecular Weight149.19
SMILES
PubChem446207
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds22
Total Aromatic Bonds6

CodeA1D
PDB ResiduesL:L:?5
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

Code004
PDB ResiduesL:L:?6
Environment DetailsOpen EMBL-EBI Page
Code004
Name(2S)-amino(phenyl)ethanoic acid
SynonymsL-Phenylglycine
Identifier
FormulaC8 H9 N O2
Molecular Weight151.163
SMILES
PubChem6931074
Formal Charge0
Total Atoms20
Total Chiral Atoms1
Total Bonds20
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP30872
Sequence
>9IK8_nogp_Chain_R
SAILISFIY SVVCLVGLC GNSMVIYVI LRYAKMKTA TNIYILNLA 
IADELLMLS VPFLVTSTL LRHWPFGAL LCRLVLSVD AVNMFTSIY 
CLTVLSVDR YVAVVHPIK AARYRRPTV AKVVNLGVW VLSLLVILP 
IVVFSRTAA CNMLMPEPA QRWLVGFVL YTFLMGFLL PVGAICLCY 
VLIIAKMRM VALKAGWQQ RKRSERKIT LMVMMVVMV FVICWMPFY 
VVQLVNVFA EQDDATVSQ LSVILGYAN SCANPILYG FLSDNFKRS 
FQRI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9IK8APeptideSomatostatinSST1Homo sapiensSST analogue-Gi1/β1/γ22.822025-04-30doi.org/10.1016/j.apsb.2025.03.043
9IK8 (No Gprot) APeptideSomatostatinSST1Homo sapiensSST analogue-2.822025-04-30doi.org/10.1016/j.apsb.2025.03.043
9IK9APeptideSomatostatinSST1Homo sapiensSST analogue-Gi1/β1/γ23.372025-04-30doi.org/10.1016/j.apsb.2025.03.043
9IK9 (No Gprot) APeptideSomatostatinSST1Homo sapiensSST analogue-3.372025-04-30doi.org/10.1016/j.apsb.2025.03.043
8XIOAPeptideSomatostatinSST1Homo sapiensL797591-chim(NtGi1-Gs-CtGi1)/β1/γ22.652024-07-03doi.org/10.1073/pnas.2400298121
8XIO (No Gprot) APeptideSomatostatinSST1Homo sapiensL797591-2.652024-07-03doi.org/10.1073/pnas.2400298121
8XIPAPeptideSomatostatinSST1Homo sapiensPasireotide-chim(NtGi1-Gs-CtGi1)/β1/γ23.292024-07-03doi.org/10.1073/pnas.2400298121
8XIP (No Gprot) APeptideSomatostatinSST1Homo sapiensPasireotide-3.292024-07-03doi.org/10.1073/pnas.2400298121




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Download 9IK8_nogp.zip



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