Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 17.6117610
2L:L:?2 15.2343710
3L:L:?3 14.415610
4L:L:?4 12.965810
5L:L:K5 6.41610
6L:L:?6 11.225810
7L:L:?7 14.1517610
8L:L:?8 16.712510
9L:L:?9 12.14410
10R:R:Y65 7.425656
11R:R:Y86 3.105405
12R:R:N94 4.254528
13R:R:I95 3.8375405
14R:R:Y96 4.758507
15R:R:L107 5.66407
16R:R:M108 3.085416
17R:R:V111 4.655457
18R:R:V115 7.145456
19R:R:W123 6.92143768
20R:R:R131 3.5225406
21R:R:V139 4.625405
22R:R:N140 7.3675407
23R:R:M141 5.2575417
24R:R:F142 6.168506
25R:R:H161 2.93407
26R:R:V177 1.6405
27R:R:I189 4.742507
28R:R:M212 12.68444
29R:R:V221 3.9475482
30R:R:P235 3.348519
31R:R:Y243 5.235639
32R:R:E266 10.0425406
33R:R:V273 2.4125407
34R:R:V276 3.65438
35R:R:F280 3.59419
36R:R:W284 5.926518
37R:R:F287 6.3516
38R:R:Y288 5.42517
39R:R:Y313 5.885417
40R:R:P320 4.555409
41R:R:F325 5.765406
42R:R:N329 4.578527
43R:R:F330 6.83608
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?2 L:L:?4 12.40013.09YesYes100
2L:L:?3 L:L:?4 24.582434.27YesYes100
3L:L:?4 L:L:?6 12.288813.15YesYes100
4L:L:?3 R:R:L220 17.469615.5YesNo005
5L:L:?4 L:L:K5 25.671813.43YesYes100
6L:L:?4 R:R:F223 19.21278.7YesNo006
7L:L:?4 R:R:F287 27.12924.83YesYes106
8R:R:Q291 R:R:V224 16.31725.73NoNo065
9L:L:K5 R:R:V309 40.62854.55YesNo005
10L:L:K5 R:R:Y313 36.75987.17YesYes107
11R:R:V309 R:R:Y65 38.82732.52NoYes056
12R:R:V115 R:R:Y65 11.935318.93YesYes566
13R:R:M108 R:R:Y313 29.11933.59YesYes167
14R:R:D104 R:R:M108 24.34034.16NoYes196
15R:R:D104 R:R:N76 59.037420.2NoNo099
16R:R:N76 R:R:P320 54.67979.77NoYes099
17R:R:F325 R:R:P320 26.94522.89YesYes069
18R:R:L107 R:R:Y313 16.65627.03YesYes077
19R:R:L107 R:R:N140 14.45796.87YesYes077
20R:R:L106 R:R:N140 14.278813.73NoYes077
21R:R:I102 R:R:L106 12.61322.85NoNo077
22R:R:I102 R:R:I80 10.97662.94NoNo077
23R:R:P320 R:R:V79 24.59213.53YesNo099
24R:R:F330 R:R:V79 26.76616.55YesNo089
25R:R:F325 R:R:F330 23.110413.93YesYes068
26R:R:F330 R:R:V82 21.73059.18YesNo087
27R:R:S333 R:R:V82 19.33863.23NoNo057
28R:R:S333 R:R:Y86 12.10482.54NoYes055
29R:R:F330 R:R:I83 21.87092.51YesNo087
30R:R:F223 R:R:I192 18.73825.02NoNo065
31R:R:I189 R:R:I192 19.87122.94YesNo075
32R:R:F142 R:R:I189 32.17935.02YesYes067
33R:R:F142 R:R:V188 1005.24YesNo065
34R:R:L184 R:R:V188 96.82372.98NoNo045
35R:R:L184 R:R:Y146 95.16295.86NoNo045
36R:R:V181 R:R:Y146 90.12253.79NoNo075
37R:R:V177 R:R:V181 64.0441.6YesNo057
38R:R:V150 R:R:V177 56.73271.6NoYes065
39R:R:V150 R:R:Y96 54.90736.31NoYes067
40R:R:F287 R:R:Y288 60.10266.19YesYes167
41R:R:M141 R:R:Y288 26.72743.59YesYes177
42R:R:F142 R:R:M141 74.95286.22YesYes067
43R:R:T227 R:R:Y288 23.02816.24NoYes057
44R:R:F142 R:R:T227 22.81519.08YesNo065
45R:R:A174 R:R:Y96 11.03474NoYes077
46R:R:T143 R:R:V181 25.72024.76NoNo067
47R:R:T143 R:R:W182 19.677519.41NoNo069
48R:R:N99 R:R:W182 17.760113.56NoNo099
49R:R:N178 R:R:N99 10.458513.62NoNo089
50R:R:D154 R:R:Y96 38.58043.45NoYes087
51R:R:L107 R:R:S316 40.4594.5YesNo078
52R:R:I189 R:R:S135 32.05834.64YesNo076
53R:R:S135 R:R:V193 30.70263.23NoNo064
54R:R:R131 R:R:V193 29.33713.92YesNo064
55R:R:R131 R:R:S196 23.77865.27YesNo065
56R:R:C130 R:R:S196 22.36481.72NoNo095
57R:R:C130 R:R:W123 19.50817.84NoYes098
58R:R:I189 R:R:V139 11.50924.61YesYes075
59R:R:W284 R:R:Y288 21.5613.86YesYes187
60R:R:I145 R:R:W284 61.79254.7NoYes178
61R:R:F280 R:R:I145 56.04033.77YesNo197
62R:R:F280 R:R:I239 54.9463.77YesNo098
63R:R:I239 R:R:S152 53.92926.19NoNo089
64R:R:S152 R:R:Y243 52.902711.45NoYes099
65R:R:D154 R:R:R169 36.624214.29NoNo086
66R:R:A165 R:R:R169 32.68292.77NoNo066
67R:R:A165 R:R:V157 30.69773.39NoNo065
68R:R:H161 R:R:V157 28.70292.77YesNo075
69R:R:H161 R:R:Y156 10.55053.27YesNo078
70R:R:H161 R:R:V160 10.31334.15YesNo077
71R:R:L220 R:R:M210 13.65424.24NoNo054
72R:R:M210 R:R:M212 11.7328.66NoYes044
73R:R:L225 R:R:V224 19.7552.98NoNo055
74R:R:L225 R:R:L292 16.96124.15NoNo055
75R:R:F296 R:R:L292 14.15782.44NoNo045
76R:R:F228 R:R:Y288 14.7927.22NoYes057
77R:R:F228 R:R:F232 11.15094.29NoNo058
78R:R:V273 R:R:Y243 41.05465.05YesYes079
79R:R:I247 R:R:V273 19.39671.54NoYes057
80R:R:I247 R:R:R251 16.98545.01NoNo055
81R:R:E266 R:R:R251 15.726511.63YesNo065
82R:R:I269 R:R:V273 19.39191.54NoYes077
83R:R:I269 R:R:M250 16.97578.75NoNo078
84R:R:E266 R:R:M250 15.808810.83YesNo068
85R:R:A254 R:R:E266 21.21241.51NoYes046
86R:R:A254 R:R:Q260 18.60264.55NoNo041
87R:R:Q306 R:R:Y65 10.06631.13NoYes046
88L:L:K5 R:R:F287 27.18254.96YesYes106
89R:R:F287 R:R:Q291 12.632512.88YesNo166
90R:R:L107 R:R:M141 55.28984.24YesYes077
91R:R:N140 R:R:V139 13.38792.96YesYes075
92R:R:M141 R:R:W284 44.82646.98YesYes178
93R:R:D104 R:R:S316 35.76728.83NoNo198
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D300 17.41 1 Yes No 0 4 0 1
L:L:?2 R:R:D300 15.27 1 Yes No 0 4 0 1
L:L:?3 R:R:L220 15.5 1 Yes No 0 5 0 1
L:L:?3 R:R:V224 3.57 1 Yes No 0 5 0 1
L:L:?4 R:R:F223 8.7 1 Yes No 0 6 0 1
L:L:?4 R:R:F287 4.83 1 Yes Yes 0 6 0 1
L:L:?4 R:R:Q291 20.07 1 Yes No 0 6 0 1
L:L:K5 R:R:L114 2.82 1 Yes No 0 6 0 1
L:L:K5 R:R:D137 5.53 1 Yes No 0 6 0 1
L:L:K5 R:R:F287 4.96 1 Yes Yes 0 6 0 1
L:L:K5 R:R:V309 4.55 1 Yes No 0 5 0 1
L:L:K5 R:R:Y313 7.17 1 Yes Yes 0 7 0 1
L:L:?6 R:R:N209 12.64 1 Yes No 0 5 0 1
L:L:?7 R:R:S305 8.45 1 Yes No 0 4 0 1
R:R:L107 R:R:Y313 7.03 0 Yes Yes 7 7 2 1
R:R:M108 R:R:Y313 3.59 1 Yes Yes 6 7 2 1
R:R:D137 R:R:Y313 5.75 1 No Yes 6 7 1 1
R:R:F223 R:R:I192 5.02 0 No No 6 5 1 2
R:R:A207 R:R:N209 3.13 0 No No 5 5 2 1
R:R:L220 R:R:M210 4.24 0 No No 5 4 1 2
R:R:L225 R:R:V224 2.98 0 No No 5 5 2 1
R:R:Q291 R:R:V224 5.73 1 No No 6 5 1 1
R:R:F287 R:R:Y288 6.19 1 Yes Yes 6 7 1 2
R:R:F287 R:R:Q291 12.88 1 Yes No 6 6 1 1
R:R:D300 R:R:N294 6.73 1 No No 4 4 1 2
R:R:F287 R:R:S308 2.64 1 Yes No 6 6 1 2
R:R:V309 R:R:Y65 2.52 0 No Yes 5 6 1 2
R:R:A216 R:R:L220 1.58 0 No No 3 5 2 1
R:R:L114 R:R:S117 1.5 0 No No 6 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9IK9_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.77
Number of Linked Nodes 274
Number of Links 305
Number of Hubs 43
Number of Links mediated by Hubs 165
Number of Communities 8
Number of Nodes involved in Communities 48
Number of Links involved in Communities 70
Path Summary
Number Of Nodes in MetaPath 94
Number Of Links MetaPath 93
Number of Shortest Paths 52321
Length Of Smallest Path 3
Average Path Length 14.4563
Length of Longest Path 33
Minimum Path Strength 1.17
Average Path Strength 6.16293
Maximum Path Strength 31.47
Minimum Path Correlation 0.7
Average Path Correlation 0.942105
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 52.0862
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.3305
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code4J2
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code4J2
Name(2R)-2-amino-3-(naphthalen-2-yl)propanoic acid
Synonyms
Identifier
FormulaC13 H13 N O2
Molecular Weight215.248
SMILES
PubChem2733661
Formal Charge0
Total Atoms29
Total Chiral Atoms1
Total Bonds30
Total Aromatic Bonds11

CodeDCY
PDB ResiduesL:L:?2 L:L:?7
Environment DetailsOpen EMBL-EBI Page
CodeDCY
NameD-Cysteine
SynonymsD-Zystein
Identifier
FormulaC3 H7 N O2 S
Molecular Weight121.158
SMILES
PubChem6419721
Formal Charge0
Total Atoms14
Total Chiral Atoms1
Total Bonds13
Total Aromatic Bonds0

CodeDTY
PDB ResiduesL:L:?3
Environment DetailsOpen EMBL-EBI Page
CodeDTY
NameD-Tyrosine
Synonyms
  • (R)-2-Amino-3-(p-hydroxyphenyl)propionic acid
  • (R)-3-(p-Hydroxyphenyl)alanine
  • D-Tyr
  • D-Tyrosin
  • D-Tyrosine
Identifier
FormulaC9 H11 N O3
Molecular Weight181.189
SMILES
PubChem71098
Formal Charge0
Total Atoms24
Total Chiral Atoms1
Total Bonds24
Total Aromatic Bonds6

CodeDTR
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeDTR
NameD-Tryptophan
Synonyms
  • D-Tryptophan
  • (2R)-2-amino-3-(1H-indol-3-yl)propanoic acid
  • (R)-tryptophan
  • DTR
Identifier
FormulaC11 H12 N2 O2
Molecular Weight204.225
SMILES
PubChem6923517
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds10

CodeDVA
PDB ResiduesL:L:?6
Environment DetailsOpen EMBL-EBI Page
CodeDVA
NameD-VALINE
Synonyms
Identifier
FormulaC5 H11 N O2
Molecular Weight117.146
SMILES
PubChem71563
Formal Charge0
Total Atoms19
Total Chiral Atoms1
Total Bonds18
Total Aromatic Bonds0

CodeALO
PDB ResiduesL:L:?8
Environment DetailsOpen EMBL-EBI Page
CodeALO
NameALLO-THREONINE
Synonyms
Identifier
FormulaC4 H9 N O3
Molecular Weight119.119
SMILES
PubChem6995276
Formal Charge0
Total Atoms17
Total Chiral Atoms2
Total Bonds16
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP30872
Sequence
>9IK9_nogp_Chain_R
SAILISFIY SVVCLVGLC GNSMVIYVI LRYAKMKTA TNIYILNLA 
IADELLMLS VPFLVTSTL LRHWPFGAL LCRLVLSVD AVNMFTSIY 
CLTVLSVDR YVAVVHPIK AARYRRPTV AKVVNLGVW VLSLLVILP 
IVVFSRTAA CNMLMPEPA QRWLVGFVL YTFLMGFLL PVGAICLCY 
VLIIAKMRM VALKAGWQQ RKRSERKIT LMVMMVVMV FVICWMPFY 
VVQLVNVFA EQDDATVSQ LSVILGYAN SCANPILYG FLSDNFKRS 
FQRILCLSW MDNA


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9IK8APeptideSomatostatinSST1Homo sapiensSST analogue-Gi1/β1/γ22.822025-04-30doi.org/10.1016/j.apsb.2025.03.043
9IK8 (No Gprot) APeptideSomatostatinSST1Homo sapiensSST analogue-2.822025-04-30doi.org/10.1016/j.apsb.2025.03.043
9IK9APeptideSomatostatinSST1Homo sapiensSST analogue-Gi1/β1/γ23.372025-04-30doi.org/10.1016/j.apsb.2025.03.043
9IK9 (No Gprot) APeptideSomatostatinSST1Homo sapiensSST analogue-3.372025-04-30doi.org/10.1016/j.apsb.2025.03.043
8XIOAPeptideSomatostatinSST1Homo sapiensL797591-chim(NtGi1-Gs-CtGi1)/β1/γ22.652024-07-03doi.org/10.1073/pnas.2400298121
8XIO (No Gprot) APeptideSomatostatinSST1Homo sapiensL797591-2.652024-07-03doi.org/10.1073/pnas.2400298121
8XIPAPeptideSomatostatinSST1Homo sapiensPasireotide-chim(NtGi1-Gs-CtGi1)/β1/γ23.292024-07-03doi.org/10.1073/pnas.2400298121
8XIP (No Gprot) APeptideSomatostatinSST1Homo sapiensPasireotide-3.292024-07-03doi.org/10.1073/pnas.2400298121




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Download 9IK9_nogp.zip



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