Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:V45 4.4275415
2R:R:F49 5.294517
3R:R:I67 4.31407
4R:R:T87 5.45408
5R:R:F91 5.264517
6R:R:F98 8.84333616
7R:R:Y120 5.84426
8R:R:Q123 5.198524
9R:R:Q127 8.185446
10R:R:Y142 6.1775434
11R:R:R153 5.3475434
12R:R:R154 7.92333637
13R:R:H181 13.525405
14R:R:F195 9.728526
15R:R:F204 6.1825425
16R:R:N208 5.8925425
17R:R:L212 6.3406
18R:R:Y213 4.36167678
19R:R:Y224 10.102569
20R:R:F272 4.26509
21R:R:W276 8.764518
22R:R:Y302 7.126585
23R:R:Y313 7.775617
24R:R:L322 4.63458
25R:R:Y323 6.36333659
26R:R:F330 6.126508
27L:L:R219 6.102520
28L:L:F220 6.874520
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:P46 R:R:V45 13.23473.53NoYes065
2R:R:F49 R:R:V45 15.97645.24YesYes175
3R:R:F49 R:R:Y313 14.32879.28YesYes177
4R:R:F91 R:R:Y313 73.92484.13YesYes177
5R:R:F91 R:R:S316 50.08196.61YesNo079
6R:R:F91 R:R:W276 1005.01YesYes178
7R:R:F272 R:R:W276 72.09998.02YesYes098
8R:R:F272 R:R:L133 62.91363.65YesNo098
9R:R:L133 R:R:Y323 62.32454.69NoYes089
10R:R:M136 R:R:Y323 83.77115.99NoYes099
11R:R:L84 R:R:M136 82.11015.65NoNo099
12R:R:L84 R:R:T132 80.43144.42NoNo098
13R:R:T132 R:R:T87 78.74399.42NoYes088
14R:R:T87 R:R:W167 14.22694.85YesNo089
15R:R:T90 R:R:W167 10.20518.49NoNo069
16R:R:N315 R:R:W276 62.975613.56NoYes098
17R:R:N315 R:R:N319 59.44110.9NoNo099
18R:R:N319 R:R:Y323 58.90073.49NoYes099
19R:R:D88 R:R:S316 44.01388.83NoNo099
20R:R:D88 R:R:N60 42.773612.12NoNo099
21R:R:A85 R:R:N60 38.99994.69NoNo099
22R:R:F330 R:R:V66 11.86615.24YesNo087
23R:R:F330 R:R:V63 36.43976.55YesNo089
24R:R:A85 R:R:V63 37.72423.39NoNo099
25R:R:F330 R:R:I67 21.78773.77YesYes087
26R:R:I67 R:R:N78 14.74515.66YesNo078
27R:R:M73 R:R:N78 11.86619.82NoNo078
28R:R:N83 R:R:T87 63.15724.39NoYes098
29R:R:N83 R:R:S163 61.381110.43NoNo098
30R:R:F79 R:R:S163 59.59612.64NoNo068
31R:R:A159 R:R:F79 54.18795.55NoNo076
32R:R:A159 R:R:Y80 52.36754NoNo077
33R:R:D139 R:R:Y80 46.839710.34NoNo087
34R:R:D139 R:R:R154 43.021714.29NoYes387
35L:L:L218 R:R:F98 29.10484.87NoYes006
36R:R:F98 R:R:L101 50.22378.53YesNo064
37L:L:N214 R:R:L101 47.73446.87NoNo004
38L:L:L218 R:R:N119 25.66336.87NoNo005
39R:R:C115 R:R:N119 18.6343.15NoNo095
40R:R:C115 R:R:W108 14.02763.92NoNo098
41R:R:P185 R:R:S184 13.62891.78NoNo023
42R:R:S184 R:R:Y190 16.56115.09NoNo034
43L:L:W213 R:R:Y190 18.01392.89NoNo004
44L:L:W213 R:R:R297 19.457912NoNo002
45L:L:F216 R:R:R297 34.75669.62NoNo002
46L:L:F216 R:R:Y302 36.09435.16NoYes005
47L:L:S215 R:R:Y302 41.35626.36NoYes005
48L:L:N212 L:L:S215 42.64968.94NoNo000
49L:L:N212 L:L:N214 43.93415.45NoNo000
50R:R:H181 R:R:N119 24.268128.06YesNo055
51L:L:R219 R:R:H181 18.20883.39YesYes005
52L:L:R219 R:R:Q123 11.64467.01YesYes204
53R:R:Q123 R:R:S174 20.3265.78YesNo247
54R:R:S174 R:R:Y120 10.17413.82NoYes276
55L:L:R219 R:R:F204 13.4657.48YesYes205
56R:R:V126 R:R:W276 63.84378.58NoYes078
57R:R:L212 R:R:V126 19.15224.47YesNo067
58R:R:L212 R:R:N208 11.81738.24YesYes065
59L:L:F220 R:R:V126 45.360313.11YesNo007
60R:R:L212 R:R:Q127 10.22729.32YesYes066
61R:R:R140 R:R:Y323 35.58058.23NoYes099
62R:R:R140 R:R:Y224 33.804310.29NoYes099
63R:R:R154 R:R:Y142 29.8183.09YesYes374
64R:R:F146 R:R:Y142 16.07838.25NoYes064
65R:R:F146 R:R:V145 12.074210.49NoNo067
66R:R:R153 R:R:Y142 10.17858.23YesYes344
67R:R:E201 R:R:F195 10.918219.82NoYes046
68R:R:F272 R:R:Y213 14.29333.09YesYes098
69R:R:V265 R:R:Y224 16.224520.19NoYes089
70R:R:L228 R:R:V265 14.22244.47NoNo058
71R:R:H295 R:R:R297 15.09945.64NoNo032
72R:R:H295 R:R:P296 10.66137.63NoNo033
73R:R:F98 R:R:Y313 51.69424.13YesYes167
74L:L:F220 L:L:R219 33.98595.34YesYes200
75R:R:N208 R:R:Q123 17.11923.96YesYes254
76R:R:F195 R:R:F204 12.58366.43YesYes265
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F49 R:R:F98 4.29 1 Yes Yes 7 6 2 1
R:R:F49 R:R:L102 4.87 1 Yes No 7 5 2 2
R:R:F49 R:R:Y313 9.28 1 Yes Yes 7 7 2 2
R:R:P97 R:R:V118 5.3 0 No No 9 5 2 1
R:R:F98 R:R:L101 8.53 1 Yes No 6 4 1 1
R:R:F98 R:R:L102 9.74 1 Yes No 6 5 1 2
R:R:F98 R:R:H309 21.5 1 Yes No 6 6 1 2
R:R:F98 R:R:Y313 4.13 1 Yes Yes 6 7 1 2
L:L:L218 R:R:F98 4.87 0 No Yes 0 6 0 1
L:L:N214 R:R:L101 6.87 0 No No 0 4 0 1
L:L:G217 R:R:L101 3.42 0 No No 0 4 0 1
L:L:N214 R:R:G107 5.09 0 No No 0 5 0 1
L:L:L218 R:R:V118 7.45 0 No No 0 5 0 1
R:R:H181 R:R:N119 28.06 0 Yes No 5 5 1 1
L:L:L218 R:R:N119 6.87 0 No No 0 5 0 1
R:R:Q123 R:R:S174 5.78 2 Yes No 4 7 1 2
R:R:Q123 R:R:V177 5.73 2 Yes No 4 5 1 2
R:R:F204 R:R:Q123 3.51 2 Yes Yes 5 4 1 1
R:R:N208 R:R:Q123 3.96 2 Yes Yes 5 4 1 1
L:L:R219 R:R:Q123 7.01 2 Yes Yes 0 4 0 1
R:R:L212 R:R:V126 4.47 0 Yes No 6 7 2 1
R:R:V126 R:R:W276 8.58 0 No Yes 7 8 1 2
L:L:F220 R:R:V126 13.11 2 Yes No 0 7 0 1
R:R:H181 R:R:L180 11.57 0 Yes No 5 4 1 2
R:R:F195 R:R:L180 13.4 2 Yes No 6 4 2 2
R:R:F204 R:R:L180 7.31 2 Yes No 5 4 1 2
R:R:E193 R:R:H181 11.08 0 No Yes 4 5 2 1
L:L:R219 R:R:H181 3.39 2 Yes Yes 0 5 0 1
R:R:S184 R:R:Y190 5.09 0 No No 3 4 2 1
R:R:E193 R:R:F195 4.66 0 No Yes 4 6 2 2
R:R:F195 R:R:F204 6.43 2 Yes Yes 6 5 2 1
L:L:R219 R:R:F204 7.48 2 Yes Yes 0 5 0 1
R:R:L212 R:R:N208 8.24 0 Yes Yes 6 5 2 1
R:R:L283 R:R:N208 4.12 2 No Yes 5 5 1 1
L:L:F220 R:R:N208 7.25 2 Yes Yes 0 5 0 1
L:L:F220 R:R:I279 5.02 2 Yes No 0 7 0 1
L:L:R219 R:R:L283 7.29 2 Yes No 0 5 0 1
L:L:F220 R:R:L283 3.65 2 Yes No 0 5 0 1
R:R:H295 R:R:R297 5.64 0 No No 3 2 2 1
L:L:W213 R:R:R297 12 0 No No 0 2 0 1
L:L:F216 R:R:R297 9.62 0 No No 0 2 0 1
R:R:Y299 R:R:Y302 5.96 8 No Yes 4 5 1 1
L:L:Y211 R:R:Y299 13.9 8 No No 0 4 0 1
R:R:T306 R:R:Y302 6.24 0 No Yes 4 5 2 1
L:L:Y211 R:R:Y302 11.91 8 No Yes 0 5 0 1
L:L:S215 R:R:Y302 6.36 0 No Yes 0 5 0 1
L:L:F216 R:R:Y302 5.16 0 No Yes 0 5 0 1
R:R:H309 R:R:Y313 11.98 1 No Yes 6 7 2 2
R:R:A308 R:R:I279 3.25 0 No No 6 7 2 1
R:R:C115 R:R:N119 3.15 0 No No 9 5 2 1
L:L:W213 R:R:Y190 2.89 0 No No 0 4 0 1
R:R:G107 R:R:R188 1.5 0 No No 5 2 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8ZJD_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.39
Number of Linked Nodes 273
Number of Links 290
Number of Hubs 28
Number of Links mediated by Hubs 111
Number of Communities 8
Number of Nodes involved in Communities 44
Number of Links involved in Communities 55
Path Summary
Number Of Nodes in MetaPath 77
Number Of Links MetaPath 76
Number of Shortest Paths 50792
Length Of Smallest Path 3
Average Path Length 15.5989
Length of Longest Path 38
Minimum Path Strength 1.21
Average Path Strength 6.78426
Maximum Path Strength 22.58
Minimum Path Correlation 0.7
Average Path Correlation 0.937304
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 52.578
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.7608
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ969F8
Sequence
>8ZJD_nogp_Chain_R
AWLVPLFFA ALMLLGLVG NSLVIYVIC RHKPMRTVT NFYIANLAA 
TDVTFLLCC VPFTALLYP LPGWVLGDF MCKFVNYIQ QVSVQATCW 
TLTAMSVDR WYVTVFPLR ALHRRTPRL ALAVSLSIW VGSAAVSAP 
VLALHRLSP GPRAYCSEA FPSRALERA FALYNLLAL YLLPLLATC 
ACYAAMLRH LGRVSALQG QVLAERAGA VRAKVSRLV AAVVLLFAA 
CWGPIQLFL VLQALGPWH PRSYAAYAL KTWAHCMSY SNSALNPLL 
YAFLGSHFR QAFRRV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XGSAPeptideKisspeptinKiss1Homo sapiensMetastin-chim(NtGi1-Gq)/β1/γ22.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGS (No Gprot) APeptideKisspeptinKiss1Homo sapiensMetastin-2.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGOAPeptideKisspeptinKiss1Homo sapiensTAK448-chim(NtGi1-Gq)/β1/γ22.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGO (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-2.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGUAPeptideKisspeptinKiss1Homo sapiensTAK448-Gi1/β1/γ232024-10-30doi.org/10.1126/sciadv.adn7771
8XGU (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-32024-10-30doi.org/10.1126/sciadv.adn7771
8ZJEAPeptideKisspeptinKiss1Homo sapiensTAK-448-chim(NtGi1-Gq)/β1/γ13.072024-07-03To be published
8ZJE (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK-448-3.072024-07-03To be published
8ZJDAPeptideKisspeptinKiss1Homo sapiensKisspeptin-10-chim(NtGi1-Gq)/β1/γ13.062024-07-03To be published
8ZJD (No Gprot) APeptideKisspeptinKiss1Homo sapiensKisspeptin-10-3.062024-07-03To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ZJD_nogp.zip



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