Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F49 4.892517
2R:R:M53 6.9025417
3R:R:N60 6.055409
4R:R:M73 7.2407
5R:R:V76 4.47406
6R:R:L84 5.128519
7R:R:D88 6.62419
8R:R:F91 4.55143717
9R:R:L92 4.6517
10R:R:V96 5.32518
11R:R:T99 6.0325416
12R:R:Y103 6.636525
13R:R:W108 6.476538
14R:R:Y120 5.4925406
15R:R:V124 3.1975405
16R:R:V126 3.602517
17R:R:Q127 3.09506
18R:R:R154 7.275407
19R:R:I166 1.9575407
20R:R:W167 3.7825409
21R:R:H181 11.775405
22R:R:E193 7.5825444
23R:R:Y213 5.4875418
24R:R:Y224 8.724519
25R:R:W276 5.365618
26R:R:I279 3.6225407
27R:R:Q280 3.666517
28R:R:Y302 7.4125425
29R:R:H309 8.39516
30R:R:Y313 5.65286717
31R:R:N319 7.4125419
32R:R:L322 2.0175408
33R:R:Y323 7.82167619
34R:R:F330 6.6575408
35L:L:F4 7.045400
36L:L:R7 7.35510
37L:L:F8 5.69410
38L:L:?9 5.938510
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:Y103 R:R:Y302 19.35389.93YesYes255
2R:R:V45 R:R:Y103 11.20227.57NoYes055
3R:R:F49 R:R:V45 18.66497.87YesNo075
4R:R:K305 R:R:Y103 24.98777.17NoYes045
5R:R:H309 R:R:K305 71.133313.1YesNo064
6R:R:F49 R:R:Y313 14.10537.22YesYes177
7R:R:H309 R:R:Y313 19.39489.8YesYes167
8R:R:L92 R:R:V96 10.12792.98YesYes178
9R:R:D88 R:R:N60 19.5266.73YesYes099
10R:R:D88 R:R:S316 69.435810.31YesNo199
11R:R:F91 R:R:S316 57.37253.96YesNo179
12R:R:F91 R:R:Y313 28.78464.13YesYes177
13R:R:L92 R:R:S316 12.97369.01YesNo179
14R:R:D88 R:R:N319 28.00566.73YesYes199
15L:L:?9 R:R:H309 29.65399.55YesYes106
16L:L:?9 L:L:F8 48.76173.01YesYes100
17L:L:F8 R:R:Q123 87.82197.03YesNo104
18R:R:Q123 R:R:S174 91.82382.89NoNo047
19R:R:S174 R:R:V124 90.56914.85NoYes075
20R:R:V124 R:R:W167 98.30242.45YesYes059
21R:R:S163 R:R:W167 94.09552.47NoYes089
22R:R:N83 R:R:S163 92.66038.94NoNo098
23R:R:F79 R:R:N83 91.20886.04NoNo069
24R:R:A159 R:R:F79 88.25654.16NoNo076
25R:R:A159 R:R:Y80 86.75585.34NoNo077
26R:R:V76 R:R:Y80 66.50813.79YesNo067
27R:R:T75 R:R:V76 42.52913.17NoYes076
28R:R:N78 R:R:T75 38.78964.39NoNo087
29R:R:I67 R:R:N78 23.17537.08NoNo078
30R:R:F330 R:R:I67 21.14973.77YesNo087
31R:R:F330 R:R:V66 12.88349.18YesNo087
32R:R:F334 R:R:V66 10.77585.24NoNo067
33R:R:M73 R:R:N78 14.97469.82YesNo078
34R:R:R154 R:R:V76 19.17349.15YesYes076
35R:R:D139 R:R:Y80 19.148811.49NoNo087
36R:R:D139 R:R:R154 17.328211.91NoYes087
37R:R:D88 R:R:L84 32.13882.71YesYes199
38R:R:F91 R:R:T129 21.75662.59YesNo079
39R:R:T129 R:R:T87 10.16893.14NoNo098
40R:R:L84 R:R:M136 13.1542.83YesNo199
41R:R:L84 R:R:Y323 26.57045.86YesYes199
42R:R:N319 R:R:Y323 23.831412.79YesYes199
43R:R:F91 R:R:V126 65.1962.62YesYes177
44L:L:F8 R:R:V126 1005.24YesYes107
45R:R:H309 R:R:I279 30.19522.65YesYes067
46R:R:I279 R:R:L283 18.60752.85YesNo075
47L:L:R7 R:R:L283 18.45173.64YesNo005
48L:L:R7 R:R:H181 63.990512.41YesYes005
49R:R:H181 R:R:N119 46.112828.06YesNo055
50L:L:F8 L:L:R7 55.69957.48YesYes100
51R:R:C115 R:R:N119 36.56723.15NoNo095
52R:R:C115 R:R:W108 24.44647.84NoYes398
53R:R:A189 R:R:W108 10.19351.3NoYes048
54R:R:L110 R:R:W108 12.7039.11NoYes078
55R:R:L110 R:R:M114 10.19357.07NoNo076
56R:R:H181 R:R:V177 24.11022.77YesNo055
57R:R:V177 R:R:Y120 22.53573.79NoYes056
58R:R:V124 R:R:Y120 21.68283.79YesYes056
59R:R:I279 R:R:Q280 23.10974.12YesYes077
60R:R:Q280 R:R:W276 14.08894.38YesYes178
61R:R:L212 R:R:Q127 16.89366.65NoYes066
62R:R:C130 R:R:T129 19.80481.69NoNo079
63R:R:C130 R:R:P216 17.38563.77NoNo079
64R:R:F272 R:R:W276 49.19633.01NoYes098
65R:R:F272 R:R:L133 48.15483.65NoNo098
66R:R:L133 R:R:T220 46.85094.42NoNo088
67R:R:M136 R:R:R140 11.61233.72NoNo199
68R:R:R140 R:R:Y323 23.83145.14NoYes199
69R:R:S137 R:R:T220 15.93416.4NoNo198
70R:R:C223 R:R:S137 21.83865.16NoNo079
71R:R:T220 R:R:Y224 29.79332.5NoYes189
72R:R:C223 R:R:W141 16.47532.61NoNo078
73R:R:V145 R:R:W141 11.046411.03NoNo078
74R:R:R154 R:R:Y142 28.17784.12YesNo074
75R:R:R149 R:R:Y142 20.20673.09NoNo054
76R:R:R149 R:R:R153 16.19657.46NoNo054
77R:R:H181 R:R:L180 24.88933.86YesNo054
78R:R:E193 R:R:L180 20.0185.3YesNo044
79L:L:N2 R:R:Y190 12.9083.49NoNo004
80R:R:E193 R:R:E201 12.547217.76YesNo444
81R:R:E201 R:R:P196 10.19351.57NoNo044
82L:L:R7 R:R:F204 10.10338.55YesNo005
83R:R:L215 R:R:P216 10.02951.64NoNo069
84R:R:G277 R:R:Y213 20.88735.79NoYes068
85R:R:V265 R:R:Y224 38.797810.09NoYes089
86R:R:V261 R:R:V265 30.08861.6NoNo088
87R:R:L228 R:R:V261 27.15272.98NoNo058
88R:R:L228 R:R:S262 24.20047.51NoNo057
89R:R:R258 R:R:S262 21.23181.32NoNo077
90R:R:G232 R:R:R258 12.22733NoNo057
91R:R:L322 R:R:Y323 25.20912.34YesYes089
92R:R:G277 R:R:P278 17.95154.06NoNo069
93R:R:P278 R:R:W307 14.99925.4NoNo095
94R:R:F282 R:R:K305 46.654111.17NoNo054
95R:R:A301 R:R:F282 42.12731.39NoNo065
96L:L:F4 L:L:N2 14.76966.04YesNo000
97L:L:F4 R:R:R297 12.70319.24YesNo002
98R:R:M311 R:R:W307 12.030510.47NoNo075
99R:R:H152 R:R:R153 12.16992.26NoNo054
100L:L:?9 R:R:Y313 10.97262.9YesYes107
101R:R:L212 R:R:V126 14.93364.47NoYes067
102R:R:V126 R:R:W276 56.76562.45YesYes178
103R:R:R140 R:R:Y224 31.663113.38NoYes199
104R:R:W276 R:R:Y213 16.80335.79YesYes188
105L:L:F4 R:R:A301 30.7611.39YesNo006
106R:R:L84 R:R:T132 11.37447.37YesNo098
107R:R:F91 R:R:L92 12.25193.65YesYes177
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F49 R:R:V96 2.62 1 Yes Yes 7 8 2 2
R:R:F49 R:R:T99 2.59 1 Yes Yes 7 6 2 1
R:R:F49 R:R:Y313 7.22 1 Yes Yes 7 7 2 1
R:R:C95 R:R:F91 6.98 1 No Yes 7 7 2 2
R:R:F91 R:R:S125 7.93 1 Yes No 7 8 2 2
R:R:F91 R:R:V126 2.62 1 Yes Yes 7 7 2 1
R:R:F91 R:R:Y313 4.13 1 Yes Yes 7 7 2 1
R:R:C95 R:R:Q122 12.21 1 No No 7 6 2 1
R:R:C95 R:R:Y313 6.72 1 No Yes 7 7 2 1
R:R:V96 R:R:Y313 5.05 1 Yes Yes 8 7 2 1
R:R:F98 R:R:V118 6.55 0 No No 6 5 2 1
R:R:H309 R:R:T99 6.85 1 Yes Yes 6 6 1 1
R:R:T99 R:R:Y313 3.75 1 Yes Yes 6 7 1 1
L:L:?9 R:R:T99 10.94 1 Yes Yes 0 6 0 1
R:R:C115 R:R:W108 7.84 3 No Yes 9 8 2 2
R:R:V118 R:R:W108 3.68 0 No Yes 5 8 1 2
R:R:C115 R:R:N119 3.15 3 No No 9 5 2 1
L:L:L6 R:R:V118 2.98 0 No No 0 5 0 1
R:R:H181 R:R:N119 28.06 0 Yes No 5 5 1 1
L:L:L6 R:R:N119 9.61 0 No No 0 5 0 1
R:R:I121 R:R:Q122 2.74 0 No No 5 6 2 1
L:L:?9 R:R:Q122 3.29 1 Yes No 0 6 0 1
R:R:Q123 R:R:S174 2.89 1 No No 4 7 1 2
L:L:R7 R:R:Q123 4.67 1 Yes No 0 4 0 1
L:L:F8 R:R:Q123 7.03 1 Yes No 0 4 0 1
R:R:S125 R:R:V126 3.23 1 No Yes 8 7 2 1
R:R:L212 R:R:V126 4.47 0 No Yes 6 7 2 1
R:R:V126 R:R:W276 2.45 1 Yes Yes 7 8 1 2
L:L:F8 R:R:V126 5.24 1 Yes Yes 0 7 0 1
R:R:H181 R:R:V177 2.77 0 Yes No 5 5 1 2
R:R:H181 R:R:L180 3.86 0 Yes No 5 4 1 2
L:L:R7 R:R:H181 12.41 1 Yes Yes 0 5 0 1
R:R:R188 R:R:Y190 3.09 0 No No 2 4 2 1
L:L:N2 R:R:Y190 3.49 0 No No 0 4 0 1
L:L:S3 R:R:Y190 7.63 0 No No 0 4 0 1
R:R:F204 R:R:N208 4.83 0 No No 5 5 1 2
L:L:R7 R:R:F204 8.55 1 Yes No 0 5 0 1
R:R:I279 R:R:L283 2.85 0 Yes No 7 5 2 1
R:R:H309 R:R:I279 2.65 1 Yes Yes 6 7 1 2
R:R:F282 R:R:K305 11.17 0 No No 5 4 2 2
L:L:R7 R:R:L283 3.64 1 Yes No 0 5 0 1
R:R:Q286 R:R:R297 4.67 0 No No 4 2 2 1
R:R:A301 R:R:W294 5.19 0 No No 6 1 1 2
R:R:H295 R:R:R297 3.39 0 No No 3 2 2 1
L:L:F4 R:R:R297 19.24 0 Yes No 0 2 0 1
L:L:W1 R:R:Y299 6.75 0 No No 0 4 0 1
R:R:H309 R:R:K305 13.1 1 Yes No 6 4 1 2
R:R:H309 R:R:Y313 9.8 1 Yes Yes 6 7 1 1
L:L:?9 R:R:H309 9.55 1 Yes Yes 0 6 0 1
L:L:?9 R:R:Y313 2.9 1 Yes Yes 0 7 0 1
R:R:Y299 R:R:Y302 1.99 0 No Yes 4 5 1 2
R:R:A301 R:R:F282 1.39 0 No No 6 5 1 2
L:L:F4 R:R:A301 1.39 0 Yes No 0 6 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XGS_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.45
Number of Linked Nodes 273
Number of Links 297
Number of Hubs 38
Number of Links mediated by Hubs 138
Number of Communities 5
Number of Nodes involved in Communities 40
Number of Links involved in Communities 57
Path Summary
Number Of Nodes in MetaPath 108
Number Of Links MetaPath 107
Number of Shortest Paths 41450
Length Of Smallest Path 3
Average Path Length 13.1318
Length of Longest Path 36
Minimum Path Strength 1.26
Average Path Strength 5.7281
Maximum Path Strength 20.235
Minimum Path Correlation 0.7
Average Path Correlation 0.93561
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 57.3078
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.9745
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ969F8
Sequence
>8XGS_nogp_Chain_R
AVDAWLVPL FFAALMLLG LVGNSLVIY VICRHKPMR TVTNFYIAN 
LAATDVTFL LCCVPFTAL LYPLPGWVL GDFMCKFVN YIQQVSVQA 
TCATLTAMS VDRWYVTVF PLRALHRRT PRLALAVSL SIWVGSAAV 
SAPVLALHR LSPGPRAYC SEAFPSRAL ERAFALYNL LALYLLPLL 
ATCACYAAM LRHLGRVAV DSALQGQVL AERAGAVRA KVSRLVAAV 
VLLFAACWG PIQLFLVLQ ALGPAGSWH PRSYAAYAL KTWAHCMSY 
SNSALNPLL YAFLGSHFR QAFRRV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XGSAPeptideKisspeptinKiss1Homo sapiensMetastin-chim(NtGi1-Gq)/β1/γ22.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGS (No Gprot) APeptideKisspeptinKiss1Homo sapiensMetastin-2.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGOAPeptideKisspeptinKiss1Homo sapiensTAK448-chim(NtGi1-Gq)/β1/γ22.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGO (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-2.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGUAPeptideKisspeptinKiss1Homo sapiensTAK448-Gi1/β1/γ232024-10-30doi.org/10.1126/sciadv.adn7771
8XGU (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-32024-10-30doi.org/10.1126/sciadv.adn7771
8ZJEAPeptideKisspeptinKiss1Homo sapiensTAK-448-chim(NtGi1-Gq)/β1/γ13.072024-07-03To be published
8ZJE (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK-448-3.072024-07-03To be published
8ZJDAPeptideKisspeptinKiss1Homo sapiensKisspeptin-10-chim(NtGi1-Gq)/β1/γ13.062024-07-03To be published
8ZJD (No Gprot) APeptideKisspeptinKiss1Homo sapiensKisspeptin-10-3.062024-07-03To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XGS_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.