Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F49 6.0825417
2R:R:M73 4.145407
3R:R:F79 4.9275406
4R:R:L84 6.156529
5R:R:T87 5.775408
6R:R:D88 6.594509
7R:R:C95 5.235417
8R:R:F98 6.934516
9R:R:L101 5.8025414
10R:R:L102 7.004515
11R:R:W108 7.234518
12R:R:Y120 7.87416
13R:R:Q123 5.59333614
14R:R:Q127 6.60333616
15R:R:Y142 5.1475434
16R:R:F146 5.795436
17R:R:R154 7.746507
18R:R:S174 4.8825417
19R:R:L180 3.455414
20R:R:F195 8.044516
21R:R:N208 6.978515
22R:R:L212 6.2525416
23R:R:Y213 4.386518
24R:R:L217 3.3725406
25R:R:Y224 9.1975449
26R:R:L228 2.9175405
27R:R:W276 7.265408
28R:R:Q280 5.41517
29R:R:F282 8.11415
30R:R:K305 9.99414
31R:R:H309 9.575416
32R:R:Y313 5.35333617
33R:R:N319 7.275429
34R:R:Y323 5.77833629
35R:R:F330 6.228508
36L:L:?3 11.838510
37L:L:F6 4.566510
38L:L:L8 5.71714710
39L:L:?9 7.555810
40L:L:W10 9.63143710
41L:L:?11 7.1575410
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F98 R:R:L102 11.41897.31YesYes165
2R:R:F98 R:R:Y313 25.45124.13YesYes167
3R:R:C95 R:R:Y313 12.83296.72YesYes177
4R:R:C95 R:R:F91 15.69154.19YesNo077
5R:R:F91 R:R:S316 10.57217.93NoNo079
6R:R:F330 R:R:V63 25.18683.93YesNo089
7R:R:A85 R:R:V63 27.67753.39NoNo099
8R:R:A85 R:R:N60 31.35614.69NoNo099
9R:R:D88 R:R:N60 33.77026.73YesNo099
10R:R:D88 R:R:N319 77.38059.42YesYes099
11R:R:N315 R:R:N319 99.26439.54NoYes099
12R:R:N315 R:R:W276 10012.43NoYes098
13R:R:S312 R:R:W276 52.84133.71NoYes078
14R:R:S312 R:R:Y313 52.59235.09NoYes077
15R:R:F330 R:R:I67 10.943.77YesNo087
16R:R:F79 R:R:N83 65.84282.42YesNo069
17R:R:N83 R:R:T87 68.20322.92NoYes098
18R:R:D88 R:R:T87 64.80444.34YesYes098
19R:R:F79 R:R:R74 30.513110.69YesNo067
20R:R:P156 R:R:R74 29.19114.32NoNo017
21R:R:P156 R:R:V76 25.23665.3NoNo016
22R:R:R154 R:R:V76 23.922310.46YesNo076
23R:R:A159 R:R:F79 31.89644.16NoYes076
24R:R:A159 R:R:Y80 30.58215.34NoNo077
25R:R:D139 R:R:Y80 25.309413.79NoNo087
26R:R:D139 R:R:R154 23.987411.91NoYes087
27R:R:D88 R:R:L84 14.82558.14YesYes099
28R:R:N319 R:R:Y323 44.15454.65YesYes299
29R:R:L84 R:R:Y323 22.14437.03YesYes299
30R:R:L84 R:R:T132 11.24274.42YesNo098
31R:R:H309 R:R:Y313 14.42315.44YesYes167
32R:R:F98 R:R:L101 15.40024.87YesYes164
33R:R:L101 R:R:W108 17.84884.56YesYes148
34L:L:T5 R:R:L102 11.12017.37NoYes005
35R:R:L110 R:R:W108 10.112310.25NoYes078
36L:L:?9 L:L:L8 22.66933.29YesYes100
37L:L:?9 R:R:K305 20.26673.36YesYes104
38R:R:H309 R:R:K305 14.185511.79YesYes164
39L:L:W10 R:R:Q123 23.61579.86YesYes104
40R:R:Q123 R:R:Q127 19.9875.12YesYes146
41R:R:V126 R:R:W276 43.44944.9NoYes078
42R:R:Q127 R:R:W131 12.319416.43YesNo066
43L:L:W10 R:R:Q280 10.19664.38YesYes107
44R:R:R140 R:R:Y323 50.83347.2NoYes099
45R:R:R140 R:R:Y224 49.365810.29NoYes099
46R:R:R154 R:R:Y142 36.70922.06YesYes074
47R:R:F146 R:R:Y142 19.89887.22YesYes364
48R:R:F146 R:R:V145 14.34659.18YesNo067
49R:R:R153 R:R:Y142 11.41516.17NoYes344
50R:R:V265 R:R:Y224 40.031417.66NoYes089
51R:R:L228 R:R:V265 38.44892.98YesNo058
52R:R:L228 R:R:V261 30.48242.98YesNo058
53L:L:F6 R:R:K305 20.21314.96YesYes104
54R:R:V257 R:R:V261 23.92231.6NoNo068
55R:R:R253 R:R:V257 22.26311.31NoNo036
56R:R:Q248 R:R:R253 20.59621.17NoNo043
57R:R:L245 R:R:Q248 15.54972.66NoNo034
58R:R:L322 R:R:V268 10.43414.47NoNo088
59R:R:V268 R:R:Y323 12.1476.31NoYes089
60R:R:F282 R:R:K305 11.530119.85YesYes154
61R:R:H295 R:R:R297 12.468911.28NoNo032
62L:L:F6 R:R:R297 14.223.21YesNo002
63L:L:?9 L:L:W10 38.793712.65YesYes100
64L:L:W10 R:R:V126 43.384315.94YesNo007
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F49 R:R:V45 7.87 1 Yes No 7 5 2 2
R:R:L102 R:R:V45 13.41 1 Yes No 5 5 1 2
R:R:L102 R:R:P46 3.28 1 Yes No 5 6 1 2
R:R:F49 R:R:L102 3.65 1 Yes Yes 7 5 2 1
R:R:F49 R:R:Y313 7.22 1 Yes Yes 7 7 2 2
R:R:C95 R:R:F91 4.19 1 Yes No 7 7 1 2
R:R:C95 R:R:Q122 6.1 1 Yes No 7 6 1 1
R:R:C95 R:R:Y313 6.72 1 Yes Yes 7 7 1 2
L:L:?11 R:R:C95 3.93 1 Yes Yes 0 7 0 1
R:R:P97 R:R:V118 3.53 0 No No 9 5 2 1
R:R:F98 R:R:L101 4.87 1 Yes Yes 6 4 1 1
R:R:F98 R:R:L102 7.31 1 Yes Yes 6 5 1 1
R:R:F98 R:R:H309 14.71 1 Yes Yes 6 6 1 1
R:R:F98 R:R:Y313 4.13 1 Yes Yes 6 7 1 2
L:L:L8 R:R:F98 3.65 1 Yes Yes 0 6 0 1
R:R:L101 R:R:W108 4.56 1 Yes Yes 4 8 1 2
L:L:N4 R:R:L101 8.24 0 No Yes 0 4 0 1
L:L:L8 R:R:L101 5.54 1 Yes Yes 0 4 0 1
L:L:T5 R:R:L102 7.37 0 No Yes 0 5 0 1
L:L:N4 R:R:G107 5.09 0 No No 0 5 0 1
R:R:C115 R:R:W108 3.92 1 No Yes 9 8 2 2
R:R:C191 R:R:W108 11.75 1 No Yes 9 8 1 2
R:R:C115 R:R:C191 5.46 1 No No 9 9 2 1
L:L:L8 R:R:V118 5.96 1 Yes No 0 5 0 1
R:R:H181 R:R:N119 25.51 1 No No 5 5 1 1
L:L:L8 R:R:N119 8.24 1 Yes No 0 5 0 1
L:L:?9 R:R:N119 4.36 1 Yes No 0 5 0 1
L:L:L8 R:R:Q122 7.99 1 Yes No 0 6 0 1
L:L:?11 R:R:Q122 9.88 1 Yes No 0 6 0 1
R:R:Q123 R:R:Q127 5.12 1 Yes Yes 4 6 1 2
R:R:Q123 R:R:V177 5.73 1 Yes No 4 5 1 2
R:R:F204 R:R:Q123 4.68 1 No Yes 5 4 1 1
R:R:N208 R:R:Q123 5.28 1 Yes Yes 5 4 1 1
L:L:W10 R:R:Q123 9.86 1 Yes Yes 0 4 0 1
R:R:V126 R:R:W276 4.9 0 No Yes 7 8 1 2
L:L:W10 R:R:V126 15.94 1 Yes No 0 7 0 1
R:R:L212 R:R:Q127 6.65 1 Yes Yes 6 6 2 2
R:R:F195 R:R:L180 7.31 1 Yes Yes 6 4 1 1
L:L:?9 R:R:L180 3.29 1 Yes Yes 0 4 0 1
L:L:?9 R:R:H181 12.24 1 Yes No 0 5 0 1
R:R:S184 R:R:Y190 3.82 0 No No 3 4 2 1
L:L:?3 R:R:Y190 24.65 1 Yes No 0 4 0 1
L:L:N4 R:R:Y190 5.81 0 No No 0 4 0 1
L:L:?7 R:R:C191 4.6 0 No No 0 9 0 1
R:R:E193 R:R:F195 4.66 0 No Yes 4 6 2 1
R:R:E201 R:R:F195 13.99 0 No Yes 4 6 2 1
R:R:F195 R:R:F204 7.5 1 Yes No 6 5 1 1
L:L:?9 R:R:F195 6.76 1 Yes Yes 0 6 0 1
L:L:?9 R:R:F204 14.49 1 Yes No 0 5 0 1
R:R:L212 R:R:N208 9.61 1 Yes Yes 6 5 2 1
R:R:N208 R:R:Q280 6.6 1 Yes Yes 5 7 1 1
R:R:L283 R:R:N208 5.49 0 No Yes 5 5 2 1
L:L:W10 R:R:N208 7.91 1 Yes Yes 0 5 0 1
R:R:L209 R:R:Y213 3.52 1 No Yes 5 8 2 2
R:R:L209 R:R:Q280 5.32 1 No Yes 5 7 2 1
R:R:L212 R:R:Q280 3.99 1 Yes Yes 6 7 2 1
R:R:Q280 R:R:Y213 6.76 1 Yes Yes 7 8 1 2
R:R:A308 R:R:I279 4.87 0 No No 6 7 2 1
L:L:W10 R:R:I279 8.22 1 Yes No 0 7 0 1
L:L:W10 R:R:Q280 4.38 1 Yes Yes 0 7 0 1
R:R:F282 R:R:Q286 5.86 1 Yes No 5 4 1 1
R:R:F282 R:R:K305 19.85 1 Yes Yes 5 4 1 1
L:L:F6 R:R:F282 4.29 1 Yes Yes 0 5 0 1
L:L:F6 R:R:Q286 7.03 1 Yes No 0 4 0 1
R:R:H295 R:R:R297 11.28 0 No No 3 2 2 1
L:L:F6 R:R:R297 3.21 1 Yes No 0 2 0 1
R:R:Y299 R:R:Y302 7.94 0 No No 4 5 1 1
L:L:?2 R:R:Y299 5.63 1 No No 0 4 0 1
R:R:T306 R:R:Y302 6.24 0 No No 4 5 2 1
L:L:T5 R:R:Y302 7.49 0 No No 0 5 0 1
R:R:H309 R:R:K305 11.79 1 Yes Yes 6 4 1 1
L:L:F6 R:R:K305 4.96 1 Yes Yes 0 4 0 1
L:L:?9 R:R:K305 3.36 1 Yes Yes 0 4 0 1
R:R:H309 R:R:Y313 5.44 1 Yes Yes 6 7 1 2
L:L:?11 R:R:H309 6.36 1 Yes Yes 0 6 0 1
R:R:Q123 R:R:S174 2.89 1 Yes Yes 4 7 1 2
R:R:Q127 R:R:S174 2.89 1 Yes Yes 6 7 2 2
R:R:F282 R:R:L304 2.44 1 Yes No 5 6 1 2
R:R:L180 R:R:P176 1.64 1 Yes No 4 6 1 2
R:R:A179 R:R:L180 1.58 0 No Yes 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8ZJE_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.21
Number of Linked Nodes 262
Number of Links 304
Number of Hubs 41
Number of Links mediated by Hubs 149
Number of Communities 5
Number of Nodes involved in Communities 56
Number of Links involved in Communities 84
Path Summary
Number Of Nodes in MetaPath 65
Number Of Links MetaPath 64
Number of Shortest Paths 56231
Length Of Smallest Path 3
Average Path Length 13.3264
Length of Longest Path 27
Minimum Path Strength 1.07
Average Path Strength 6.45886
Maximum Path Strength 24.465
Minimum Path Correlation 0.7
Average Path Correlation 0.937512
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 59.4797
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.1619
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeACY
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeACY
NameAcetic acid
SynonymsAcetic acid, glacial
Identifier
FormulaC2 H4 O2
Molecular Weight60.052
SMILES
PubChem176
Formal Charge0
Total Atoms8
Total Chiral Atoms0
Total Bonds7
Total Aromatic Bonds0

CodeDTY
PDB ResiduesL:L:?2
Environment DetailsOpen EMBL-EBI Page
CodeDTY
NameD-Tyrosine
Synonyms
  • (R)-2-Amino-3-(p-hydroxyphenyl)propionic acid
  • (R)-3-(p-Hydroxyphenyl)alanine
  • D-Tyr
  • D-Tyrosin
  • D-Tyrosine
Identifier
FormulaC9 H11 N O3
Molecular Weight181.189
SMILES
PubChem71098
Formal Charge0
Total Atoms24
Total Chiral Atoms1
Total Bonds24
Total Aromatic Bonds6

CodeHYP
PDB ResiduesL:L:?3
Environment DetailsOpen EMBL-EBI Page
CodeHYP
NameHydroxyproline
SynonymsHYDROXYPROLINE
Identifier
FormulaC5 H9 N O3
Molecular Weight131.13
SMILES
PubChem5810
Formal Charge0
Total Atoms18
Total Chiral Atoms2
Total Bonds18
Total Aromatic Bonds0

CodeXZA
PDB ResiduesL:L:?7
Environment DetailsOpen EMBL-EBI Page
CodeXZA
Namediazanecarboxylic acid
Synonyms
Identifier
FormulaC H4 N2 O2
Molecular Weight76.055
SMILES
PubChem129728243
Formal Charge0
Total Atoms9
Total Chiral Atoms0
Total Bonds8
Total Aromatic Bonds0

CodeNMM
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeNMM
NameTilarginine
SynonymsL-Ng-monomethyl Arginine
Identifier
FormulaC7 H16 N4 O2
Molecular Weight188.228
SMILES
PubChem46906075
Formal Charge0
Total Atoms29
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?11
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ969F8
Sequence
>8ZJE_nogp_Chain_R
AWLVPLFFA ALMLLGLVG NSLVIYVIC MRTVTNFYI ANLAATDVT 
FLLCCVPFT ALLYPLPGW VLGDFMCKF VNYIQQVSV QATCWTLTA 
MSVDRWYVT VFPLRALHR RTPRLALAV SLSIWVGSA AVSAPVLAL 
HRLSPYCSE AFPSRALER AFALYNLLA LYLLPLLAT CACYAAMLR 
HLGRVPADS ALQGQVLAE RAGAVRAKV SRLVAAVVL LFAACWGPI 
QLFLVLQAL GPWHPRSYA AYALKTWAH CMSYSNSAL NPLLYAFLG 
SHFRQAFRR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZJDAPeptideKisspeptinKiss1Homo sapiensKisspeptin-10-chim(NtGi1-Gq)/β1/γ13.062024-07-03doi.org/10.1016/j.celrep.2024.114389
8ZJD (No Gprot) APeptideKisspeptinKiss1Homo sapiensKisspeptin-10-3.062024-07-03doi.org/10.1016/j.celrep.2024.114389
8ZJEAPeptideKisspeptinKiss1Homo sapiensTAK-448-chim(NtGi1-Gq)/β1/γ13.072024-07-03doi.org/10.1016/j.celrep.2024.114389
8ZJE (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK-448-3.072024-07-03doi.org/10.1016/j.celrep.2024.114389
8XGOAPeptideKisspeptinKiss1Homo sapiensTAK448-chim(NtGi1-Gq)/β1/γ22.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGO (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-2.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGSAPeptideKisspeptinKiss1Homo sapiensMetastin-chim(NtGi1-Gq)/β1/γ22.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGS (No Gprot) APeptideKisspeptinKiss1Homo sapiensMetastin-2.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGUAPeptideKisspeptinKiss1Homo sapiensTAK448-Gi1/β1/γ232024-10-30doi.org/10.1126/sciadv.adn7771
8XGU (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-32024-10-30doi.org/10.1126/sciadv.adn7771




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ZJE_nogp.zip



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