Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?2 12.9225420
2L:L:?3 11.6575420
3L:L:T5 6.13420
4L:L:F6 8.296520
5L:L:L8 5.69286710
6L:L:?9 8.04833610
7L:L:W10 8.81667610
8L:L:?11 7.47714710
9R:R:M53 6.5775407
10R:R:N60 6439
11R:R:I67 3.4025407
12R:R:P72 4.425405
13R:R:M73 6.0925407
14R:R:T87 4.6408
15R:R:D88 4.7639
16R:R:F91 5.194517
17R:R:C95 5.9325417
18R:R:Y103 7.484525
19R:R:C115 5.6975419
20R:R:N119 7.5425415
21R:R:Y120 4.925406
22R:R:Q122 4.9925416
23R:R:Q123 4.62414
24R:R:W141 4.414548
25R:R:F146 4.234546
26R:R:R154 6.878507
27R:R:L183 6.43403
28R:R:R188 6.4225422
29R:R:Y190 10.6025424
30R:R:F195 6.2275406
31R:R:E201 7.94474
32R:R:P216 3.2409
33R:R:Y224 7.798569
34R:R:Q248 3.1325404
35R:R:R253 3.7075403
36R:R:F272 5.0775409
37R:R:W276 6.875408
38R:R:I279 4507
39R:R:P290 3.97401
40R:R:P296 5.065423
41R:R:Y302 7.305425
42R:R:Y313 5.17125817
43R:R:N319 4.89439
44R:R:L322 2.4725408
45R:R:Y323 5.722509
46R:R:F330 5.42558
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:N4 R:R:L102 31.54056.87NoNo005
2L:L:F6 R:R:F282 12.30194.29YesNo005
3L:L:?7 R:R:L102 49.12934.01NoNo005
4L:L:?7 L:L:L8 50.84978.02NoYes000
5L:L:?11 L:L:L8 34.621210.28YesYes100
6R:R:F282 R:R:K305 13.36118.69NoNo054
7R:R:H309 R:R:K305 13.829813.1NoNo064
8L:L:L8 R:R:T99 17.74124.42YesNo106
9L:L:L8 R:R:N119 20.0376.87YesYes105
10L:L:L8 R:R:Q122 18.78913.99YesYes106
11L:L:W10 R:R:Q122 10.57383.29YesYes106
12L:L:?9 R:R:F195 16.41714.83YesYes006
13L:L:?11 R:R:C95 28.27693.93YesYes107
14R:R:C95 R:R:Q122 23.31966.1YesYes176
15R:R:H309 R:R:Y313 10.568110.89NoYes167
16R:R:F91 R:R:Y313 60.42143.09YesYes177
17R:R:F91 R:R:S316 1005.28YesNo079
18R:R:D88 R:R:S316 95.90575.89YesNo099
19R:R:D88 R:R:N60 36.76276.73YesYes399
20R:R:A85 R:R:N60 40.30254.69NoYes099
21R:R:A85 R:R:I64 38.51173.25NoNo097
22R:R:A82 R:R:I64 34.10111.62NoNo067
23R:R:A82 R:R:I67 33.20761.62NoYes067
24R:R:I67 R:R:P72 19.87123.39YesYes075
25R:R:I67 R:R:N78 11.74175.66YesNo078
26R:R:M73 R:R:T77 10.01757.53YesNo078
27R:R:D88 R:R:T129 17.83842.89YesNo099
28R:R:T129 R:R:T87 16.98863.14NoYes098
29R:R:N83 R:R:T87 16.7012.92NoYes098
30R:R:N83 R:R:S163 15.99988.94NoNo098
31R:R:F79 R:R:S163 15.34062.64NoNo068
32R:R:A159 R:R:F79 14.03372.77NoNo076
33R:R:A159 R:R:Y80 13.41454NoNo077
34R:R:D88 R:R:L84 30.7085.43YesNo099
35R:R:L84 R:R:Y323 30.9884.69NoYes099
36R:R:D88 R:R:N319 31.56154.04YesYes399
37R:R:N319 R:R:Y323 35.40438.14YesYes099
38R:R:F91 R:R:W276 13.59934.01YesYes078
39R:R:C115 R:R:N119 23.98644.72YesYes195
40R:R:C115 R:R:W108 18.68247.84YesNo198
41R:R:L110 R:R:W108 16.047511.39NoNo078
42R:R:R188 R:R:Y190 24.864715.43YesYes224
43R:R:P187 R:R:R188 21.1022.88NoYes012
44R:R:G186 R:R:P187 19.20254.06NoNo011
45R:R:G186 R:R:P185 17.29922.03NoNo012
46R:R:L183 R:R:P185 13.48128.21YesNo032
47R:R:R140 R:R:Y323 60.48247.2NoYes099
48R:R:R140 R:R:Y224 59.21166.17NoYes099
49R:R:S137 R:R:Y224 20.35710.17NoYes699
50R:R:C223 R:R:S137 18.83671.72NoNo079
51R:R:C223 R:R:W141 15.7355.22NoYes078
52R:R:V265 R:R:Y224 34.116415.14NoYes089
53R:R:V261 R:R:V265 32.60551.6NoNo088
54R:R:L228 R:R:V261 31.09094.47NoNo058
55R:R:L228 R:R:S262 29.57256.01NoNo057
56R:R:R258 R:R:S262 28.05021.32NoNo077
57R:R:G232 R:R:R258 21.91934.5NoNo057
58R:R:G232 R:R:R253 20.3784.5NoYes053
59R:R:L250 R:R:R253 12.61813.64NoYes033
60R:R:L250 R:R:Q246 11.0543.99NoNo034
61R:R:C275 R:R:N315 12.33049.45NoNo099
62R:R:C275 R:R:L271 11.07493.17NoNo097
63L:L:?11 R:R:Y313 31.32912.9YesYes107
64R:R:T99 R:R:Y313 17.95084.99NoYes167
65R:R:L102 R:R:Y103 16.44194.69NoYes055
66R:R:C95 R:R:F91 50.99456.98YesYes177
67L:L:?11 L:L:?9 26.48038.15YesYes100
68L:L:N4 R:R:Y190 27.347211.63NoYes204
69L:L:?9 R:R:N119 11.44073.27YesYes105
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?2 R:R:Y299 7.5 2 Yes No 0 4 0 1
L:L:?3 R:R:Y190 11 2 Yes Yes 0 4 0 1
L:L:N4 R:R:L102 6.87 2 No No 0 5 0 1
L:L:N4 R:R:Y190 11.63 2 No Yes 0 4 0 1
L:L:T5 R:R:Y302 7.49 2 Yes Yes 0 5 0 1
L:L:F6 R:R:F282 4.29 2 Yes No 0 5 0 1
L:L:F6 R:R:P296 2.89 2 Yes Yes 0 3 0 1
L:L:F6 R:R:R297 22.45 2 Yes No 0 2 0 1
L:L:?7 R:R:L102 4.01 0 No No 0 5 0 1
L:L:L8 R:R:T99 4.42 1 Yes No 0 6 0 1
L:L:L8 R:R:V118 2.98 1 Yes No 0 5 0 1
L:L:L8 R:R:N119 6.87 1 Yes Yes 0 5 0 1
L:L:L8 R:R:Q122 3.99 1 Yes Yes 0 6 0 1
L:L:?9 R:R:N119 3.27 1 Yes Yes 0 5 0 1
L:L:?9 R:R:F195 4.83 1 Yes Yes 0 6 0 1
L:L:?9 R:R:F204 11.59 1 Yes No 0 5 0 1
L:L:W10 R:R:Q122 3.29 1 Yes Yes 0 6 0 1
L:L:W10 R:R:Q123 8.76 1 Yes Yes 0 4 0 1
L:L:W10 R:R:V126 12.26 1 Yes No 0 7 0 1
L:L:W10 R:R:N208 7.91 1 Yes No 0 5 0 1
L:L:W10 R:R:I279 3.52 1 Yes Yes 0 7 0 1
L:L:?11 R:R:C95 3.93 1 Yes Yes 0 7 0 1
L:L:?11 R:R:T99 10.94 1 Yes No 0 6 0 1
L:L:?11 R:R:Q122 6.59 1 Yes Yes 0 6 0 1
L:L:?11 R:R:H309 9.55 1 Yes No 0 6 0 1
L:L:?11 R:R:Y313 2.9 1 Yes Yes 0 7 0 1
R:R:D41 R:R:Y302 8.05 0 No Yes 2 5 2 1
R:R:F49 R:R:Y313 4.13 0 No Yes 7 7 2 1
R:R:C95 R:R:F91 6.98 1 Yes Yes 7 7 1 2
R:R:F91 R:R:Y313 3.09 1 Yes Yes 7 7 2 1
R:R:C95 R:R:Q122 6.1 1 Yes Yes 7 6 1 1
R:R:C95 R:R:Y313 6.72 1 Yes Yes 7 7 1 1
R:R:V96 R:R:Y313 6.31 0 No Yes 8 7 2 1
R:R:F98 R:R:V118 13.11 0 No No 6 5 2 1
R:R:T99 R:R:Y313 4.99 1 No Yes 6 7 1 1
R:R:L102 R:R:Y103 4.69 0 No Yes 5 5 1 2
R:R:Y103 R:R:Y302 9.93 2 Yes Yes 5 5 2 1
R:R:T306 R:R:Y103 3.75 2 No Yes 4 5 2 2
R:R:G107 R:R:R188 4.5 2 No Yes 5 2 2 2
R:R:G107 R:R:Y190 4.35 2 No Yes 5 4 2 1
R:R:C115 R:R:N119 4.72 1 Yes Yes 9 5 2 1
R:R:C115 R:R:H181 2.95 1 Yes No 9 5 2 2
R:R:H181 R:R:N119 15.31 1 No Yes 5 5 2 1
R:R:Q123 R:R:S174 2.89 1 Yes No 4 7 1 2
R:R:N208 R:R:Q123 3.96 1 No Yes 5 4 1 1
R:R:F195 R:R:L180 6.09 0 Yes No 6 4 1 2
R:R:R188 R:R:Y190 15.43 2 Yes Yes 2 4 2 1
R:R:E193 R:R:F195 8.16 0 No Yes 4 6 2 1
R:R:E201 R:R:F195 5.83 7 Yes Yes 4 6 2 1
R:R:L212 R:R:N208 6.87 0 No No 6 5 2 1
R:R:I279 R:R:Q280 4.12 0 Yes No 7 7 1 2
R:R:A308 R:R:I279 4.87 0 No Yes 6 7 2 1
R:R:I279 R:R:S312 4.64 0 Yes No 7 7 1 2
R:R:F282 R:R:L304 6.09 0 No No 5 6 1 2
R:R:F282 R:R:K305 8.69 0 No No 5 4 1 2
R:R:P290 R:R:P296 3.9 0 Yes Yes 1 3 2 1
R:R:H295 R:R:P296 9.15 0 No Yes 3 3 2 1
R:R:P296 R:R:R297 4.32 2 Yes No 3 2 1 1
R:R:T306 R:R:Y302 3.75 2 No Yes 4 5 2 1
R:R:H309 R:R:K305 13.1 1 No No 6 4 1 2
R:R:H309 R:R:Y313 10.89 1 No Yes 6 7 1 1
R:R:Q123 R:R:V177 2.87 1 Yes No 4 5 1 2
R:R:I279 R:R:L283 2.85 0 Yes No 7 5 1 2
L:L:F6 R:R:A301 2.77 2 Yes No 0 6 0 1
R:R:L52 R:R:Y313 2.34 0 No Yes 7 7 2 1
R:R:A301 R:R:S298 1.71 0 No No 6 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XGU_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.88
Number of Linked Nodes 272
Number of Links 306
Number of Hubs 46
Number of Links mediated by Hubs 171
Number of Communities 7
Number of Nodes involved in Communities 48
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 70
Number Of Links MetaPath 69
Number of Shortest Paths 90470
Length Of Smallest Path 3
Average Path Length 15.5528
Length of Longest Path 36
Minimum Path Strength 1.33
Average Path Strength 5.63303
Maximum Path Strength 15.88
Minimum Path Correlation 0.7
Average Path Correlation 0.932195
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 44.4731
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.03
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeACE
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeACE
NameACETYL GROUP
Synonyms
Identifier
FormulaC2 H4 O
Molecular Weight44.053
SMILES
PubChem177
Formal Charge0
Total Atoms7
Total Chiral Atoms0
Total Bonds6
Total Aromatic Bonds0

CodeDTY
PDB ResiduesL:L:?2
Environment DetailsOpen EMBL-EBI Page
CodeDTY
NameD-Tyrosine
Synonyms
  • D-Tyr
  • (R)-3-(p-Hydroxyphenyl)alanine
  • D-Tyrosin
  • D-Tyrosine
  • (R)-2-Amino-3-(p-hydroxyphenyl)propionic acid
Identifier
FormulaC9 H11 N O3
Molecular Weight181.189
SMILES
PubChem71098
Formal Charge0
Total Atoms24
Total Chiral Atoms1
Total Bonds24
Total Aromatic Bonds6

CodeHZP
PDB ResiduesL:L:?3
Environment DetailsOpen EMBL-EBI Page
CodeHZP
Name(4S)-4-hydroxy-L-proline
Synonyms
Identifier
FormulaC5 H9 N O3
Molecular Weight131.13
SMILES
PubChem440015
Formal Charge0
Total Atoms18
Total Chiral Atoms2
Total Bonds18
Total Aromatic Bonds0

CodeXZA
PDB ResiduesL:L:?7
Environment DetailsOpen EMBL-EBI Page
CodeXZA
Namediazanecarboxylic acid
Synonyms
Identifier
FormulaC H4 N2 O2
Molecular Weight76.055
SMILES
PubChem57464706
Formal Charge0
Total Atoms9
Total Chiral Atoms0
Total Bonds8
Total Aromatic Bonds0

CodeNMM
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeNMM
NameTilarginine
SynonymsL-NMMA
Identifier
FormulaC7 H16 N4 O2
Molecular Weight188.228
SMILES
PubChem46906075
Formal Charge0
Total Atoms29
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?11
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ969F8
Sequence
>8XGU_nogp_Chain_R
VDAWLVPLF FAALMLLGL VGNSLVIYV ICRHKPMRT VTNFYIANL 
AATDVTFLL CCVPFTALL YPLPGWVLG DFMCKFVNY IQQVSVQAT 
CATLTAMSV DRWYVTVFP LRALHRRTP RLALAVSLS IWVGSAAVS 
APVLALHRL SPGPRAYCS EAFPSRALE RAFALYNLL ALYLLPLLA 
TCACYAAML RHLGRVLQG QVLAERAGA VRAKVSRLV AAVVLLFAA 
CWGPIQLFL VLQALGPAG SWHPRSYAA YALKTWAHC MSYSNSALN 
PLLYAFLGS HFRQAFRR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XGSAPeptideKisspeptinKiss1Homo sapiensMetastin-chim(NtGi1-Gq)/β1/γ22.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGS (No Gprot) APeptideKisspeptinKiss1Homo sapiensMetastin-2.952024-10-30doi.org/10.1126/sciadv.adn7771
8XGOAPeptideKisspeptinKiss1Homo sapiensTAK448-chim(NtGi1-Gq)/β1/γ22.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGO (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-2.682024-10-30doi.org/10.1126/sciadv.adn7771
8XGUAPeptideKisspeptinKiss1Homo sapiensTAK448-Gi1/β1/γ232024-10-30doi.org/10.1126/sciadv.adn7771
8XGU (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK448-32024-10-30doi.org/10.1126/sciadv.adn7771
8ZJEAPeptideKisspeptinKiss1Homo sapiensTAK-448-chim(NtGi1-Gq)/β1/γ13.072024-07-03To be published
8ZJE (No Gprot) APeptideKisspeptinKiss1Homo sapiensTAK-448-3.072024-07-03To be published
8ZJDAPeptideKisspeptinKiss1Homo sapiensKisspeptin-10-chim(NtGi1-Gq)/β1/γ13.062024-07-03To be published
8ZJD (No Gprot) APeptideKisspeptinKiss1Homo sapiensKisspeptin-10-3.062024-07-03To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XGU_nogp.zip



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