Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.080671510
2R:R:Y56 5.73333607
3R:R:Y87 4.982527
4R:R:F89 5.265406
5R:R:L91 3.505449
6R:R:D95 4.218549
7R:R:T101 5.748517
8R:R:L102 6.98407
9R:R:Y109 9.195404
10R:R:W114 5.84333658
11R:R:F116 10.3925457
12R:R:F133 4.4725407
13R:R:S143 4.9175439
14R:R:Y147 6.126538
15R:R:W173 8.462529
16R:R:M186 3.5625464
17R:R:L200 4.3475464
18R:R:F202 5.88667666
19R:R:P205 3.9675472
20R:R:K214 7.54415
21R:R:F218 4.065415
22R:R:Y233 6.906508
23R:R:L237 3.185405
24R:R:R239 2.6625405
25R:R:R258 6.635487
26R:R:T260 3.55407
27R:R:W274 5.98833618
28R:R:H278 4.2225417
29R:R:F280 2.5875405
30R:R:D293 6.485403
31R:R:H301 9.2975404
32R:R:Y308 8.705417
33R:R:N310 5.45409
34R:R:Y318 8.0275409
35R:R:L321 4.6675486
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:W284 22.75326.72YesNo004
2R:R:I289 R:R:W284 15.69982.35NoNo014
3R:R:D290 R:R:I289 14.42637NoNo031
4R:R:D290 R:R:D293 13.144210.65NoYes033
5L:L:?1 R:R:I304 37.00063.16YesNo105
6R:R:I304 R:R:Y56 36.71957.25NoYes057
7R:R:I52 R:R:Y56 11.51723.63NoYes057
8R:R:H301 R:R:Y56 20.66199.8YesYes047
9L:L:?1 R:R:Y308 28.47778.64YesYes107
10L:L:?1 R:R:S135 14.69036.64YesNo009
11R:R:D95 R:R:S135 13.56162.94YesNo099
12L:L:?1 R:R:S311 14.69898.85YesNo009
13R:R:D95 R:R:S311 13.56167.36YesNo099
14R:R:D95 R:R:N67 15.4574.04YesNo099
15R:R:N67 R:R:P315 10.33736.52NoNo099
16L:L:?1 R:R:V217 1003.29YesNo005
17R:R:F133 R:R:V217 99.64652.62YesNo075
18R:R:F133 R:R:F137 98.38578.57YesNo076
19R:R:F137 R:R:I172 97.9476.28NoNo066
20R:R:I172 R:R:M141 97.49982.92NoNo067
21R:R:M141 R:R:Y87 96.12838.38NoYes277
22R:R:M142 R:R:Y87 76.4293.59NoYes097
23R:R:I88 R:R:M142 14.50722.92NoNo089
24R:R:I88 R:R:Y318 11.994210.88NoYes089
25R:R:N169 R:R:Y87 35.05844.65NoYes277
26R:R:N169 R:R:N90 26.382117.71NoNo279
27R:R:F89 R:R:N90 25.7223.62YesNo069
28R:R:F89 R:R:I74 17.10542.51YesNo067
29L:L:?1 R:R:W274 18.22139.23YesYes108
30L:L:?1 R:R:D128 24.73813YesNo105
31R:R:D128 R:R:T101 23.82238.67NoYes157
32R:R:F104 R:R:T101 42.24383.89NoYes067
33R:R:T101 R:R:Y308 24.29517.49YesYes177
34R:R:F104 R:R:F116 21.30083.22NoYes067
35R:R:F104 R:R:V124 19.13285.24NoNo065
36R:R:H301 R:R:K108 10.23513.93YesNo044
37R:R:F116 R:R:W114 15.823312.03YesYes578
38R:R:V124 R:R:W114 15.62744.9NoYes058
39R:R:A49 R:R:Y109 15.13331.33NoYes044
40R:R:A49 R:R:L110 13.10161.58NoNo044
41R:R:L110 R:R:M111 10.94221.41NoNo044
42R:R:C121 R:R:W114 29.89619.14NoYes098
43R:R:C121 R:R:T189 19.96343.38NoNo094
44R:R:E118 R:R:T189 14.98428.47NoNo044
45L:L:?1 R:R:Y129 16.70516.42YesNo005
46R:R:I183 R:R:Y129 15.55515.71NoNo045
47R:R:M142 R:R:R146 66.7223.72NoNo099
48R:R:R146 R:R:Y233 65.92559.26NoYes098
49R:R:S143 R:R:Y233 36.83025.09YesYes098
50R:R:C232 R:R:S143 33.32915.16NoYes389
51R:R:C232 R:R:Y147 32.29836.72NoYes388
52R:R:C151 R:R:Y147 19.24356.72NoYes078
53R:R:C151 R:R:R239 17.98712.79NoYes075
54R:R:R239 R:R:V243 10.48223.92YesNo056
55R:R:I183 R:R:L200 12.24122.85NoYes044
56R:R:M186 R:R:V185 12.60331.52YesNo044
57R:R:V181 R:R:V185 10.09881.6NoNo044
58L:L:?1 R:R:K214 29.94297.28YesYes105
59R:R:D210 R:R:K214 22.335813.83NoYes045
60R:R:D210 R:R:F202 21.19439.55NoYes046
61R:R:V263 R:R:Y233 18.165916.4NoYes078
62R:R:L237 R:R:V263 17.02871.49YesNo057
63R:R:V266 R:R:Y233 15.32071.26NoYes078
64R:R:V265 R:R:V266 14.1751.6NoNo067
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:A98 5.81 1 Yes No 0 6 0 1
L:L:?1 R:R:D128 3 1 Yes No 0 5 0 1
L:L:?1 R:R:Y129 16.42 1 Yes No 0 5 0 1
L:L:?1 R:R:M132 7.29 1 Yes No 0 8 0 1
L:L:?1 R:R:S135 6.64 1 Yes No 0 9 0 1
L:L:?1 R:R:K214 7.28 1 Yes Yes 0 5 0 1
L:L:?1 R:R:V217 3.29 1 Yes No 0 5 0 1
L:L:?1 R:R:W274 9.23 1 Yes Yes 0 8 0 1
L:L:?1 R:R:I277 5.26 1 Yes No 0 5 0 1
L:L:?1 R:R:H278 4.74 1 Yes Yes 0 7 0 1
L:L:?1 R:R:V281 9.88 1 Yes No 0 6 0 1
L:L:?1 R:R:W284 6.72 1 Yes No 0 4 0 1
L:L:?1 R:R:I304 3.16 1 Yes No 0 5 0 1
L:L:?1 R:R:Y308 8.64 1 Yes Yes 0 7 0 1
L:L:?1 R:R:S311 8.85 1 Yes No 0 9 0 1
R:R:L102 R:R:Y56 4.69 0 Yes Yes 7 7 2 2
R:R:I304 R:R:Y56 7.25 1 No Yes 5 7 1 2
R:R:D95 R:R:S135 2.94 4 Yes No 9 9 2 1
R:R:D95 R:R:S311 7.36 4 Yes No 9 9 2 1
R:R:A98 R:R:N131 4.69 0 No No 6 8 1 2
R:R:D128 R:R:T101 8.67 1 No Yes 5 7 1 2
R:R:T101 R:R:Y308 7.49 1 Yes Yes 7 7 2 1
R:R:L102 R:R:Y308 15.24 0 Yes Yes 7 7 2 1
R:R:D128 R:R:Y308 3.45 1 No Yes 5 7 1 1
R:R:I183 R:R:Y129 15.71 0 No No 4 5 2 1
R:R:M132 R:R:W274 6.98 1 No Yes 8 8 1 1
R:R:F133 R:R:V217 2.62 0 Yes No 7 5 2 1
R:R:F270 R:R:I136 6.28 1 No No 9 7 2 2
R:R:I136 R:R:W274 4.7 1 No Yes 7 8 2 1
R:R:D210 R:R:K214 13.83 0 No Yes 4 5 2 1
R:R:K214 R:R:V281 4.55 1 Yes No 5 6 1 1
R:R:K214 R:R:T285 4.5 1 Yes No 5 4 1 2
R:R:F218 R:R:F222 5.36 1 Yes No 5 8 2 2
R:R:F218 R:R:H278 4.53 1 Yes Yes 5 7 2 1
R:R:F222 R:R:H278 3.39 1 No Yes 8 7 2 1
R:R:F270 R:R:W274 4.01 1 No Yes 9 8 2 1
R:R:H278 R:R:W274 4.23 1 Yes Yes 7 8 1 1
R:R:N310 R:R:W274 6.78 0 Yes Yes 9 8 2 1
R:R:C303 R:R:I277 4.91 0 No No 6 5 2 1
R:R:I277 R:R:I304 2.94 1 No No 5 5 1 1
R:R:R291 R:R:W284 10 0 No No 1 4 2 1
R:R:I289 R:R:W284 2.35 0 No No 1 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9CGJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.62
Number of Linked Nodes 261
Number of Links 281
Number of Hubs 35
Number of Links mediated by Hubs 145
Number of Communities 8
Number of Nodes involved in Communities 44
Number of Links involved in Communities 54
Path Summary
Number Of Nodes in MetaPath 65
Number Of Links MetaPath 64
Number of Shortest Paths 47070
Length Of Smallest Path 3
Average Path Length 13.6227
Length of Longest Path 31
Minimum Path Strength 1.225
Average Path Strength 5.71088
Maximum Path Strength 16.065
Minimum Path Correlation 0.7
Average Path Correlation 0.920436
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 44.6494
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.6522
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41143
Sequence
>9CGJ_nogp_Chain_R
SSLALAIAI TALYSAVCA VGLLGNVLV MFGIVRYTK MKTATNIYI 
FNLALADAL ATSTLPFQS AKYLMETWP FGELLCKAV LSIDYYNMF 
TSIFTLTMM SVDRYIAVC HPVKALDFR TPAKAKLIN ICIWVLASG 
VGVPIMVMA VTRPGAVVC MLQFPSPSW YWDTVTKIC VFLFAFVVP 
ILIITVCYG LMLLRLRSV RLLSGSKEK DRSLRRITR MVLVVVGAF 
VVCWAPIHI FVIVWTLVD IDRRDPLVV AALHLCIAL GYANSSLNP 
VLYAFLDEN FKRC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4EJ4APeptideOpioidδMus musculusNaltrindole--3.42012-05-16doi.org/10.1038/nature11111
4N6HAPeptideOpioidδHomo sapiensNaltrindoleNa-1.82013-12-25doi.org/10.1038/nature12944
4RWAAPeptideOpioidδHomo sapiensDIPP-NH2--3.282015-01-14doi.org/10.1038/nsmb.2965
4RWDAPeptideOpioidδHomo sapiensDIPP-NH2Na-2.72015-01-14doi.org/10.1038/nsmb.2965
6PT2APeptideOpioidδHomo sapiensKGCHM07--2.82019-12-11doi.org/10.1126/sciadv.aax9115
6PT3APeptideOpioidδHomo sapiensDPI-287--3.32019-12-11doi.org/10.1126/sciadv.aax9115
8F7SAPeptideOpioidδHomo sapiensDeltorphin-Gi1/β1/γ232022-12-14doi.org/10.1016/j.cell.2022.12.026
8F7S (No Gprot) APeptideOpioidδHomo sapiensDeltorphin-32022-12-14doi.org/10.1016/j.cell.2022.12.026
8Y45APeptideOpioidδHomo sapiensADL5859-Gi2/β1/γ23.452024-11-27doi.org/10.1038/s41467-024-52601-1
8Y45 (No Gprot) APeptideOpioidδHomo sapiensADL5859-3.452024-11-27doi.org/10.1038/s41467-024-52601-1
9CGJAPeptideOpioidδHomo sapiensC6-Quino-Gi1/β1/γ22.82025-04-02doi.org/10.1038/s41467-025-57734-5
9CGJ (No Gprot) APeptideOpioidδHomo sapiensC6-Quino-2.82025-04-02doi.org/10.1038/s41467-025-57734-5
9CGKAPeptideOpioidδHomo sapiensC5-Quino-Gi1/β1/γ22.622025-04-02doi.org/10.1038/s41467-025-57734-5
9CGK (No Gprot) APeptideOpioidδHomo sapiensC5-Quino-2.622025-04-02doi.org/10.1038/s41467-025-57734-5
9YDPAPeptideOpioidδHomo sapiensDADLE-chim(NtGi1L-Gs-CtGi1)/β1/γ21.952025-12-1010.1101/2025.10.16.682975
9YDP (No Gprot) APeptideOpioidδHomo sapiensDADLE-1.952025-12-1010.1101/2025.10.16.682975
9YDQAPeptideOpioidδHomo sapiensDADLEMIPS3614chim(NtGi1L-Gs-CtGi1)/β1/γ21.942025-12-1010.1101/2025.10.16.682975
9YDQ (No Gprot) APeptideOpioidδHomo sapiensDADLEMIPS36141.942025-12-1010.1101/2025.10.16.682975
9YDRAPeptideOpioidδHomo sapiensDADLEMIPS3983chim(NtGi1L-Gs-CtGi1)/β1/γ22.142025-12-1010.1101/2025.10.16.682975
9YDR (No Gprot) APeptideOpioidδHomo sapiensDADLEMIPS39832.142025-12-1010.1101/2025.10.16.682975
8Y71APeptideOpioidδHomo sapiensA1D6FBMS986187Gi1/β1/γ22.972026-01-07To be published
8Y71 (No Gprot) APeptideOpioidδHomo sapiensA1D6FBMS9861872.972026-01-07To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9CGJ_nogp.zip



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