Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.15444910
2R:R:K37 7.265414
3R:R:F41 11.836515
4R:R:Y45 8.996508
5R:R:W51 3.4425405
6R:R:N56 3.5275409
7R:R:F63 8.4125426
8R:R:Q65 5.724545
9R:R:K68 5.79406
10R:R:F76 5.5507
11R:R:D84 5.576509
12R:R:F87 4.655406
13R:R:I88 4.0125406
14R:R:Y97 8.362515
15R:R:Y98 11.565415
16R:R:W104 8.07286718
17R:R:F106 6.625405
18R:R:Y116 7.37405
19R:R:F128 7.9725458
20R:R:F137 7.732508
21R:R:W163 6.622559
22R:R:L188 6.796513
23R:R:I195 4.22482
24R:R:M201 3.6575405
25R:R:P213 3.5575409
26R:R:Y221 6.085668
27R:R:F260 8.29509
28R:R:Y263 7.354507
29R:R:L283 2.63404
30R:R:H284 8.0025414
31R:R:Y305 7.5875469
32R:R:Y306 8.17333626
33R:R:F312 8.06428
34R:R:D314 2.0325405
35R:R:R315 5.21404
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:K37 29.58965.3YesYes104
2R:R:K37 R:R:Y98 21.48865.97YesYes145
3R:R:Y97 R:R:Y98 19.421112.91YesYes155
4R:R:S102 R:R:Y97 13.44097.63NoYes155
5R:R:G101 R:R:S102 11.37791.86NoNo045
6R:R:V44 R:R:Y45 19.6393.79NoYes058
7R:R:I48 R:R:V44 15.05943.07NoNo075
8L:L:?1 R:R:Y119 40.118328.93YesNo005
9R:R:Y119 R:R:Y263 91.22323.97NoYes057
10R:R:H264 R:R:Y263 98.66177.62NoYes087
11R:R:F260 R:R:H264 1004.53YesNo098
12R:R:F260 R:R:N297 81.508210.87YesNo099
13R:R:N297 R:R:N301 81.601510.9NoNo099
14R:R:D84 R:R:N301 60.41535.39YesNo099
15R:R:D84 R:R:N56 19.06994.04YesYes099
16R:R:D84 R:R:L80 39.31358.14YesNo099
17R:R:L80 R:R:Y306 58.32567.03NoYes096
18R:R:F312 R:R:Y306 41.14097.22YesYes286
19R:R:F312 R:R:V62 36.31677.87YesNo087
20R:R:L129 R:R:N301 43.697512.36NoNo089
21R:R:L129 R:R:L80 43.05285.54NoNo089
22R:R:R315 R:R:V62 29.45623.92YesNo047
23R:R:Q65 R:R:R315 15.01494.67YesYes054
24R:R:K68 R:R:R315 13.16537.43YesYes064
25R:R:L129 R:R:Y305 42.32369.38NoYes089
26R:R:L132 R:R:Y305 18.2344.69NoYes099
27R:R:F76 R:R:L132 16.9094.87YesNo079
28R:R:L118 R:R:Y119 53.58149.38NoNo065
29R:R:F87 R:R:L118 12.25828.53YesNo066
30R:R:D84 R:R:S83 37.93074.42YesNo098
31R:R:F128 R:R:S83 36.64135.28YesNo088
32R:R:F128 R:R:W163 16.184311.02YesYes589
33R:R:F106 R:R:W104 15.695211.02YesYes058
34R:R:L188 R:R:W104 23.18264.56YesYes138
35R:R:F106 R:R:I105 10.73327.54YesNo054
36R:R:F128 R:R:I162 19.06995.02YesNo086
37R:R:I162 R:R:Y127 16.23323.63NoNo065
38R:R:I166 R:R:Y127 10.45314.84NoNo075
39R:R:F256 R:R:F260 21.172910.72NoYes099
40R:R:F256 R:R:L217 20.2977.31NoNo097
41R:R:L217 R:R:S133 19.88354.5NoNo079
42R:R:S133 R:R:Y221 20.08365.09NoYes098
43R:R:I224 R:R:Y221 31.83942.42NoYes088
44R:R:F137 R:R:I224 23.20043.77YesNo088
45R:R:I164 R:R:W163 10.45311.17NoYes039
46R:R:E189 R:R:Y97 15.45516.73NoYes155
47R:R:E189 R:R:S186 13.49874.31NoNo053
48R:R:N191 R:R:S186 11.24014.47NoNo053
49L:L:?1 R:R:L287 15.19725.2YesNo004
50R:R:H270 R:R:L287 13.90785.14NoNo044
51R:R:R267 R:R:Y263 10.93778.23NoYes057
52R:R:N202 R:R:T268 11.27.31NoNo056
53R:R:I249 R:R:Y221 17.26023.63NoYes078
54R:R:I225 R:R:I249 14.93497.36NoNo057
55R:R:A296 R:R:I48 10.63093.25NoNo057
56R:R:A296 R:R:F300 10.55535.55NoNo057
57R:R:F300 R:R:I255 10.78653.77NoNo076
58R:R:I254 R:R:I255 10.63981.47NoNo046
59R:R:I250 R:R:I254 12.64061.47NoNo044
60R:R:I225 R:R:L246 13.52992.85NoNo055
61R:R:R94 R:R:Y45 17.18028.23NoYes068
62R:R:L188 R:R:R94 36.281210.93YesNo036
63R:R:I250 R:R:L246 12.99634.28NoNo045
64R:R:L188 R:R:Y97 13.95675.86YesYes135
65R:R:L118 R:R:R94 45.21366.07NoNo066
66R:R:Y221 R:R:Y305 27.6114.96YesYes689
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K37 5.3 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y119 28.93 1 Yes No 0 5 0 1
L:L:?1 R:R:Y123 13.21 1 Yes No 0 7 0 1
L:L:?1 R:R:S169 8.86 1 Yes No 0 5 0 1
L:L:?1 R:R:L198 7.43 1 Yes No 0 4 0 1
L:L:?1 R:R:H284 8.97 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L287 5.2 1 Yes No 0 4 0 1
R:R:H284 R:R:I33 9.28 1 Yes No 4 1 1 2
R:R:F41 R:R:K37 9.93 1 Yes Yes 5 4 2 1
R:R:K37 R:R:Y98 5.97 1 Yes Yes 4 5 1 2
R:R:H284 R:R:K37 7.86 1 Yes Yes 4 4 1 1
R:R:F41 R:R:Y98 22.69 1 Yes Yes 5 5 2 2
R:R:L118 R:R:Y119 9.38 0 No No 6 5 2 1
R:R:Y119 R:R:Y263 3.97 0 No Yes 5 7 1 2
R:R:A205 R:R:Y123 5.34 0 No No 5 7 2 1
R:R:M172 R:R:M201 5.78 0 No Yes 8 5 2 1
R:R:K197 R:R:M201 4.32 0 No Yes 3 5 2 1
R:R:L198 R:R:L271 4.15 0 No No 4 5 1 2
R:R:H270 R:R:L287 5.14 0 No No 4 4 2 1
R:R:C279 R:R:H284 5.9 0 No Yes 1 4 2 1
R:R:M201 R:R:T200 3.01 0 Yes No 5 3 1 2
R:R:L173 R:R:S115 3 0 No No 5 6 1 2
L:L:?1 R:R:L173 2.97 1 Yes No 0 5 0 1
L:L:?1 R:R:M201 1.52 1 Yes Yes 0 5 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9IXX_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.76
Number of Linked Nodes 268
Number of Links 291
Number of Hubs 35
Number of Links mediated by Hubs 139
Number of Communities 8
Number of Nodes involved in Communities 35
Number of Links involved in Communities 43
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 46861
Length Of Smallest Path 3
Average Path Length 13.1724
Length of Longest Path 27
Minimum Path Strength 1.3
Average Path Strength 6.81715
Maximum Path Strength 20.63
Minimum Path Correlation 0.7
Average Path Correlation 0.927532
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 53.1375
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.9095
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeLTD
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeLTD
NameLeukotriene D4
Synonyms
  • Leukotriene D4
  • S-{(1R,2E,4E,6Z,9Z)-1-[(1S)-4-carboxy-1-hydroxybutyl]pentadeca-2,4,6,9-tetraen-1-yl}-L-cysteinylglycine
  • LTD4
  • (R-(R*,S*-(E,E,Z,Z)))-N-(S-(1-(4-Carboxy-1-hydroxybutyl)-2,4,6,9-pentadecatetraenyl)-L-cysteinyl)glycine
  • 5S-hydroxy-6R-(S-cysteinylglycinyl)-7E,9E,11E,14Z-eicosatetraenoic acid
Identifier
FormulaC25 H40 N2 O6 S
Molecular Weight496.66
SMILES
PubChem5280878
Formal Charge0
Total Atoms74
Total Chiral Atoms3
Total Bonds73
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NS75
Sequence
>9IXX_nogp_Chain_R
TIENFKREF FPIVYLIIF FWGVLGNGL SIYVFLQPY KKSTSVNVF 
MLNLAISDL LFISTLPFR ADYYLRGSN WIFGDLACR IMSYSLYVN 
MYSSIYFLT VLSVVRFLA MVHPFRLLH VTSIRSAWI LCGIIWILI 
MASSIMLLD SGSEQNGSV TSCLELNLY KIAKLQTMN YIALVVGCL 
LPFFTLSIC YLLIIRVLL KVEVRVSHR KALTTIIIT LIIFFLCFL 
PYHTLRTVH LTTWKVGLC KDRLHKALV ITLALAAAN ACFNPLLYY 
FAGENFKDR LKSALRKG


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6RZ6ALipidLeukotrieneCysLT2Homo sapiensONO-2570366--2.432019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ7ALipidLeukotrieneCysLT2Homo sapiensONO-2570366--2.432019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ8ALipidLeukotrieneCysLT2Homo sapiensONO-2080365--2.72019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ9ALipidLeukotrieneCysLT2Homo sapiensONO-2770372--2.732019-12-11doi.org/10.1038/s41467-019-13348-2
9JH5ALipidLeukotrieneCysLT2Homo sapiensC16:0 Ceramide-chim(NtGi1-Gs-CtGq)/β1/γ22.762025-04-23doi.org/10.1038/s41586-025-08792-8
9JH5 (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensC16:0 Ceramide-2.762025-04-23doi.org/10.1038/s41586-025-08792-8
9JH6ALipidLeukotrieneCysLT2Homo sapiensC20:0 Ceramide-chim(NtGi1-Gs-CtGq)/β1/γ22.892025-04-23doi.org/10.1038/s41586-025-08792-8
9JH6 (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensC20:0 Ceramide-2.892025-04-23doi.org/10.1038/s41586-025-08792-8
9IXXALipidLeukotrieneCysLT2Homo sapiensLTD4-chim(NtGi1-Gs-CtGq)/β1/γ23.152025-04-02doi.org/10.1073/pnas.2417148122
9IXX (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensLTD4-3.152025-04-02doi.org/10.1073/pnas.2417148122




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Download 9IXX_nogp.zip



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