Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.5381510
2R:R:F41 6.974515
3R:R:V44 1.905405
4R:R:I48 2.8025407
5R:R:I60 2.9725407
6R:R:V62 3.62407
7R:R:F63 6.074506
8R:R:V75 6.72426
9R:R:F76 4.5875427
10R:R:D84 5.225659
11R:R:F87 5.495406
12R:R:T90 3.8175407
13R:R:L91 5.8175407
14R:R:Y98 9.4075415
15R:R:W104 5.91667608
16R:R:Y116 9.022565
17R:R:Y123 5.875617
18R:R:Y127 4.0425415
19R:R:F128 8.45833628
20R:R:F137 5.386588
21R:R:V141 5.915487
22R:R:W156 8.425424
23R:R:C159 5.5975427
24R:R:N202 8.5175415
25R:R:P213 3.585409
26R:R:F214 5.156596
27R:R:Y221 6.73143738
28R:R:L223 1.92404
29R:R:I224 3.25408
30R:R:L261 4.95495
31R:R:Y263 7.00167617
32R:R:H264 8.25418
33R:R:R267 7.998515
34R:R:W274 18.85543
35R:R:H284 8.698544
36R:R:Y305 7.118539
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L287 40.09611.56YesNo004
2R:R:H270 R:R:L287 38.14257.71NoNo044
3R:R:H270 R:R:H284 16.84913.14NoYes444
4L:L:?1 R:R:Y98 30.66325.96YesYes105
5R:R:Y97 R:R:Y98 25.11857.94NoYes155
6L:L:?1 R:R:F41 30.98563.44YesYes105
7L:L:?1 R:R:Y123 39.13515.3YesYes107
8R:R:H264 R:R:Y123 44.161310.89YesYes187
9R:R:C210 R:R:H264 1008.85NoYes088
10R:R:C210 R:R:L261 99.91154.76NoYes085
11R:R:F214 R:R:L261 98.49537.31YesYes965
12R:R:F214 R:R:F256 99.19716.43YesNo069
13R:R:F256 R:R:L129 46.07074.87NoNo098
14R:R:L129 R:R:Y305 77.182810.55NoYes089
15R:R:T252 R:R:Y305 57.88084.99NoYes079
16R:R:L304 R:R:T252 45.62814.42NoNo077
17R:R:I255 R:R:L304 43.47858.56NoNo067
18R:R:F300 R:R:I255 36.9163.77NoNo076
19R:R:A296 R:R:F300 34.70324.16NoNo057
20R:R:A296 R:R:I48 32.47773.25NoYes057
21R:R:I48 R:R:V44 11.87963.07YesYes075
22L:L:?1 R:R:R267 35.31645.49YesYes105
23R:R:H264 R:R:R267 41.02555.64YesYes185
24L:L:?1 R:R:Y127 57.7674.64YesYes105
25R:R:P213 R:R:Y127 59.23374.17YesYes095
26R:R:I126 R:R:P213 60.19473.39NoYes079
27R:R:F260 R:R:I126 60.47928.79NoNo097
28R:R:F260 R:R:N297 60.106210.87NoNo799
29R:R:N297 R:R:N301 61.421314.98NoNo099
30R:R:L129 R:R:N301 61.14314.12NoNo089
31R:R:F41 R:R:P42 14.67411.44YesNo055
32R:R:L99 R:R:P42 12.2593.28NoNo045
33R:R:C299 R:R:I48 16.54553.27NoYes067
34R:R:L91 R:R:P92 11.37381.64YesNo079
35R:R:C299 R:R:W51 11.87962.61NoNo065
36R:R:D84 R:R:N301 89.1134.04YesNo099
37R:R:D84 R:R:P302 51.67863.22YesNo599
38R:R:P302 R:R:Y306 50.55956.95NoNo096
39R:R:F312 R:R:Y306 23.898321.66NoNo086
40R:R:S59 R:R:Y306 25.965711.45NoNo096
41R:R:F63 R:R:S59 15.71096.61YesNo069
42R:R:A81 R:R:S59 10.04623.42NoNo089
43R:R:F63 R:R:N74 21.72356.04YesNo067
44R:R:N74 R:R:R315 15.83114.82NoNo074
45R:R:R315 R:R:Y67 12.695214.4NoNo045
46R:R:F312 R:R:F63 15.26215.36NoYes086
47R:R:D84 R:R:S125 47.27194.42YesNo099
48R:R:S125 R:R:S83 45.91893.26NoNo098
49R:R:F128 R:R:S83 44.55333.96YesNo088
50R:R:F128 R:R:N79 18.587614.5YesNo289
51R:R:N79 R:R:W156 17.07666.78NoYes294
52R:R:C159 R:R:F128 20.37054.19YesYes278
53R:R:C159 R:R:W156 17.34845.22YesYes274
54R:R:V75 R:R:W156 21.957413.48YesYes264
55R:R:F76 R:R:V75 15.74265.24YesYes276
56R:R:L118 R:R:Y119 10.79228.21NoNo065
57R:R:M122 R:R:Y123 11.70265.99NoYes077
58R:R:F87 R:R:M122 16.84264.98YesNo067
59R:R:W104 R:R:Y97 22.96264.82YesNo085
60L:L:?1 R:R:M201 23.481112.78YesNo005
61R:R:L173 R:R:M201 19.01752.83NoNo055
62R:R:L173 R:R:Y116 14.5357.03NoYes055
63R:R:F256 R:R:L217 60.16317.31NoNo097
64R:R:L217 R:R:S133 20.40843NoNo379
65R:R:C220 R:R:S133 22.58335.16NoNo069
66R:R:L217 R:R:Y221 38.6234.69NoYes378
67R:R:C220 R:R:V134 10.16633.42NoNo065
68R:R:C220 R:R:F137 11.85435.59NoYes068
69R:R:I224 R:R:Y221 47.44263.63YesYes088
70R:R:F137 R:R:I224 19.65615.02YesYes088
71R:R:I224 R:R:M140 18.99852.92YesNo088
72R:R:A139 R:R:M140 14.20621.61NoNo088
73R:R:A139 R:R:H148 12.17681.46NoNo083
74R:R:H148 R:R:V149 10.39395.54NoNo034
75L:L:?1 R:R:N202 10.62783.88YesYes105
76R:R:L271 R:R:N202 13.27055.49NoYes055
77R:R:I249 R:R:Y221 13.83327.25NoYes078
78R:R:I225 R:R:I249 12.11354.42NoNo057
79R:R:T248 R:R:T252 11.59511.57NoNo077
80R:R:H270 R:R:W274 19.257815.87NoYes443
81R:R:T273 R:R:W274 12.309520.62NoYes033
82R:R:F137 R:R:L223 12.66362.44YesYes084
83R:R:H264 R:R:Y263 14.93337.62YesYes187
84R:R:Y221 R:R:Y305 28.36195.96YesYes389
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F41 3.44 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y98 5.96 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y119 17.22 1 Yes No 0 5 0 1
L:L:?1 R:R:Y123 5.3 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Y127 4.64 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L165 5.47 1 Yes No 0 4 0 1
L:L:?1 R:R:I166 5.64 1 Yes No 0 7 0 1
L:L:?1 R:R:S169 3.39 1 Yes No 0 5 0 1
L:L:?1 R:R:S170 11.03 1 Yes No 0 7 0 1
L:L:?1 R:R:M201 12.78 1 Yes No 0 5 0 1
L:L:?1 R:R:N202 3.88 1 Yes Yes 0 5 0 1
L:L:?1 R:R:A205 4.45 1 Yes No 0 5 0 1
L:L:?1 R:R:R267 5.49 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L291 7.82 1 Yes No 0 5 0 1
R:R:F36 R:R:Y97 3.09 1 No No 6 5 2 2
R:R:F36 R:R:Y98 12.38 1 No Yes 6 5 2 1
R:R:F41 R:R:Y45 16.5 1 Yes No 5 8 1 2
R:R:F41 R:R:Y98 11.35 1 Yes Yes 5 5 1 1
R:R:Y97 R:R:Y98 7.94 1 No Yes 5 5 2 1
R:R:L118 R:R:Y119 8.21 0 No No 6 5 2 1
R:R:Y119 R:R:Y263 2.98 0 No Yes 5 7 1 2
R:R:M122 R:R:Y123 5.99 0 No Yes 7 7 2 1
R:R:M122 R:R:Y263 4.79 0 No Yes 7 7 2 2
R:R:A205 R:R:Y123 4 1 No Yes 5 7 1 1
R:R:H264 R:R:Y123 10.89 1 Yes Yes 8 7 2 1
R:R:R267 R:R:Y123 6.17 1 Yes Yes 5 7 1 1
R:R:I166 R:R:Y127 4.84 1 No Yes 7 5 1 1
R:R:P213 R:R:Y127 4.17 0 Yes Yes 9 5 2 1
R:R:N202 R:R:R267 14.46 1 Yes Yes 5 5 1 1
R:R:N202 R:R:T268 10.24 1 Yes No 5 6 1 2
R:R:L271 R:R:N202 5.49 0 No Yes 5 5 2 1
R:R:H264 R:R:Y263 7.62 1 Yes Yes 8 7 2 2
R:R:R267 R:R:Y263 8.23 1 Yes Yes 5 7 1 2
R:R:L291 R:R:Y263 11.72 0 No Yes 5 7 1 2
R:R:H264 R:R:R267 5.64 1 Yes Yes 8 5 2 1
R:R:H270 R:R:L287 7.71 4 No No 4 4 2 1
R:R:G209 R:R:Y123 2.9 0 No Yes 5 7 2 1
R:R:L173 R:R:M201 2.83 0 No No 5 5 2 1
R:R:V208 R:R:Y127 2.52 0 No Yes 4 5 2 1
R:R:F41 R:R:R38 2.14 1 Yes No 5 4 1 2
L:L:?1 R:R:L287 1.56 1 Yes No 0 4 0 1
R:R:F41 R:R:P42 1.44 1 Yes No 5 5 1 2
R:R:L198 R:R:M201 1.41 0 No No 4 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JH6_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.92
Number of Linked Nodes 242
Number of Links 270
Number of Hubs 36
Number of Links mediated by Hubs 150
Number of Communities 9
Number of Nodes involved in Communities 48
Number of Links involved in Communities 61
Path Summary
Number Of Nodes in MetaPath 85
Number Of Links MetaPath 84
Number of Shortest Paths 42490
Length Of Smallest Path 3
Average Path Length 13.6149
Length of Longest Path 27
Minimum Path Strength 1.29
Average Path Strength 6.16377
Maximum Path Strength 23.06
Minimum Path Correlation 0.7
Average Path Correlation 0.91341
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 42.1948
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.6506
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1L
Name[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide
Synonyms
Identifier
FormulaC24 H31 N9 O3
Molecular Weight493.561
SMILES
PubChem44129754
Formal Charge0
Total Atoms67
Total Chiral Atoms1
Total Bonds68
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NS75
Sequence
>9JH6_nogp_Chain_R
ENFKREFFP IVYLIIFFW GVLGNGLSI YVFLQPYKK STSVNVFML 
NLAISDLLF ISTLPFRAD YYLRGSNWI FGDLACRIM SYSLYVNMY 
SSIYFLTVL SVVRFLAMV HPFRLLHVT SIRSAWILC GIIWILIMA 
SSIMLLDKI AKLQTMNYI ALVVGCLLP FFTLSICYL LIIRVLLKG 
LRVSHRKAL TTIIITLII FFLCFLPYH TLRTVHLTT WKVGLCKDR 
LHKALVITL ALAAANACF NPLLYYFAG ENFKDRL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6RZ6ALipidLeukotrieneCysLT2Homo sapiensONO-2570366--2.432019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ7ALipidLeukotrieneCysLT2Homo sapiensONO-2570366--2.432019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ8ALipidLeukotrieneCysLT2Homo sapiensONO-2080365--2.72019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ9ALipidLeukotrieneCysLT2Homo sapiensONO-2770372--2.732019-12-11doi.org/10.1038/s41467-019-13348-2
9JH5ALipidLeukotrieneCysLT2Homo sapiensC16:0 Ceramide-chim(NtGi1-Gs-CtGq)/β1/γ22.762025-04-23doi.org/10.1038/s41586-025-08792-8
9JH5 (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensC16:0 Ceramide-2.762025-04-23doi.org/10.1038/s41586-025-08792-8
9JH6ALipidLeukotrieneCysLT2Homo sapiensC20:0 Ceramide-chim(NtGi1-Gs-CtGq)/β1/γ22.892025-04-23doi.org/10.1038/s41586-025-08792-8
9JH6 (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensC20:0 Ceramide-2.892025-04-23doi.org/10.1038/s41586-025-08792-8
9IXXALipidLeukotrieneCysLT2Homo sapiensLTD4-chim(NtGi1-Gs-CtGq)/β1/γ23.152025-04-02doi.org/10.1073/pnas.2417148122
9IXX (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensLTD4-3.152025-04-02doi.org/10.1073/pnas.2417148122




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JH6_nogp.zip



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