Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.55071510
2R:R:Y45 4.9075408
3R:R:I48 2.4175407
4R:R:N56 4.6125409
5R:R:F63 6.5525426
6R:R:N74 6.844527
7R:R:W104 5.344508
8R:R:Y127 5.96415
9R:R:F128 8.146508
10R:R:F137 6.44508
11R:R:W156 7.93444
12R:R:Y193 5.36403
13R:R:Q199 6.1475413
14R:R:N202 15.08415
15R:R:L206 6.205415
16R:R:P213 4.37419
17R:R:F214 4.7375406
18R:R:Y221 4.685668
19R:R:I224 3.4825408
20R:R:F260 6.6525409
21R:R:Y263 5.78617
22R:R:H264 5.5775418
23R:R:R267 10.1515
24R:R:L271 14.2525415
25R:R:W274 10.5833633
26R:R:H284 7.1175434
27R:R:L293 3.33407
28R:R:Y305 6.2409
29R:R:Y306 9.0775426
30R:R:F312 8.31528
31R:R:R315 5.9075424
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:H270 23.449715.81YesNo004
2R:R:H270 R:R:W274 22.262925.39NoYes043
3R:R:L283 R:R:W274 11.070411.39NoYes043
4L:L:?1 R:R:R267 24.950625.61YesYes105
5R:R:R267 R:R:Y263 19.30774.12YesYes157
6R:R:L291 R:R:Y263 13.96163.52NoYes057
7R:R:L291 R:R:Y45 11.0183.52NoYes058
8L:L:?1 R:R:Y127 10010.3YesYes105
9R:R:I126 R:R:Y127 36.31763.63NoYes175
10R:R:F260 R:R:I126 38.010511.3YesNo097
11R:R:F260 R:R:N297 38.81333.62YesNo099
12R:R:N297 R:R:N301 37.725410.9NoNo099
13R:R:D84 R:R:N301 18.97614.04NoNo099
14R:R:A298 R:R:D84 10.45964.63NoNo089
15R:R:C259 R:R:F260 25.90464.19NoYes089
16R:R:C259 R:R:L293 24.47353.17NoYes087
17R:R:A296 R:R:L293 20.11053.15NoYes057
18R:R:P213 R:R:Y127 65.45085.56YesYes195
19R:R:P213 R:R:T130 66.87035.25YesNo097
20R:R:S133 R:R:T130 66.74233.2NoNo097
21R:R:S133 R:R:Y221 66.25366.36NoYes698
22R:R:R136 R:R:Y221 39.91866.17NoYes098
23R:R:R136 R:R:Y305 39.20889.26NoYes099
24R:R:L132 R:R:Y305 75.39855.86NoYes099
25R:R:L132 R:R:M77 73.54864.24NoNo098
26R:R:M77 R:R:Y306 21.50094.79NoYes086
27R:R:T252 R:R:Y221 41.92553.75NoYes078
28R:R:T252 R:R:Y305 39.66264.99NoYes079
29R:R:F63 R:R:M77 51.86748.71YesNo068
30R:R:F312 R:R:F63 14.39217.5YesYes286
31R:R:F312 R:R:V62 13.51955.24YesNo087
32R:R:F312 R:R:Y306 13.484618.57YesYes286
33R:R:F63 R:R:N74 38.64466.04YesYes267
34R:R:N74 R:R:R315 11.53588.44YesYes274
35R:R:L80 R:R:N301 23.71735.49NoNo099
36R:R:F128 R:R:L80 22.85053.65YesNo089
37R:R:F128 R:R:N79 19.040114.5YesNo089
38R:R:N79 R:R:W156 14.86914.52NoYes494
39R:R:V75 R:R:W156 14.258315.94NoYes064
40R:R:A155 R:R:V75 13.45555.09NoNo076
41R:R:A155 R:R:S72 13.22863.42NoNo076
42R:R:S72 R:R:T71 11.20423.2NoNo067
43R:R:N74 R:R:V73 20.93084.43YesNo077
44R:R:T71 R:R:V73 12.19313.17NoNo077
45L:L:?1 R:R:Y123 11.698723.68YesNo107
46R:R:M122 R:R:Y123 10.69813.59NoNo077
47R:R:F87 R:R:M122 10.08142.49NoNo067
48L:L:?1 R:R:L198 31.70453.65YesNo004
49R:R:A196 R:R:L198 30.58173.15NoNo014
50R:R:A196 R:R:D175 29.15074.63NoNo015
51R:R:D175 R:R:Y193 27.99884.6NoYes053
52R:R:S115 R:R:Y193 22.472410.17NoYes063
53R:R:M114 R:R:S115 21.00643.07NoNo056
54R:R:M114 R:R:W104 14.00813.49NoYes058
55L:L:?1 R:R:Y116 10.90755.15YesNo005
56R:R:I249 R:R:Y221 45.9573.63NoYes078
57R:R:I224 R:R:I249 36.55612.94YesNo087
58R:R:F137 R:R:I224 22.55383.77YesYes088
59R:R:S72 R:R:T150 12.30951.6NoNo066
60L:L:?1 R:R:L271 10.34917.02YesYes105
61R:R:F256 R:R:F260 28.08037.5NoYes099
62R:R:F256 R:R:L217 26.80633.65NoNo097
63R:R:L217 R:R:Y221 26.46895.86NoYes678
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y116 5.15 1 Yes No 0 5 0 1
L:L:?1 R:R:Y123 23.68 1 Yes No 0 7 0 1
L:L:?1 R:R:Y127 10.3 1 Yes Yes 0 5 0 1
L:L:?1 R:R:I166 11.28 1 Yes No 0 7 0 1
L:L:?1 R:R:S170 7.91 1 Yes No 0 7 0 1
L:L:?1 R:R:I195 21.31 1 Yes No 0 2 0 1
L:L:?1 R:R:L198 3.65 1 Yes No 0 4 0 1
L:L:?1 R:R:N202 28.94 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R267 25.61 1 Yes Yes 0 5 0 1
L:L:?1 R:R:H270 15.81 1 Yes No 0 4 0 1
L:L:?1 R:R:L271 17.02 1 Yes Yes 0 5 0 1
L:L:?1 R:R:K275 11.15 1 Yes No 0 1 0 1
R:R:L173 R:R:Y116 3.52 0 No No 5 5 2 1
R:R:L174 R:R:Y116 7.03 0 No No 5 5 2 1
R:R:S170 R:R:V120 4.85 0 No No 7 5 1 2
R:R:M122 R:R:Y123 3.59 0 No No 7 7 2 1
R:R:M122 R:R:Y263 4.79 0 No Yes 7 7 2 2
R:R:R267 R:R:Y123 4.12 1 Yes No 5 7 1 1
R:R:I126 R:R:Y127 3.63 1 No Yes 7 5 2 1
R:R:I126 R:R:P213 3.39 1 No Yes 7 9 2 2
R:R:G209 R:R:Y127 4.35 0 No Yes 5 5 2 1
R:R:P213 R:R:Y127 5.56 1 Yes Yes 9 5 2 1
R:R:Q199 R:R:Y203 12.4 1 Yes No 3 4 2 2
R:R:L271 R:R:Q199 3.99 1 Yes Yes 5 3 1 2
R:R:N202 R:R:R267 13.26 1 Yes Yes 5 5 1 1
R:R:N202 R:R:T268 4.39 1 Yes No 5 6 1 2
R:R:L271 R:R:N202 13.73 1 Yes Yes 5 5 1 1
R:R:L271 R:R:Y203 22.27 1 Yes No 5 4 1 2
R:R:H264 R:R:Y263 3.27 1 Yes Yes 8 7 2 2
R:R:R267 R:R:Y263 4.12 1 Yes Yes 5 7 1 2
R:R:H264 R:R:R267 3.39 1 Yes Yes 8 5 2 1
R:R:H270 R:R:W274 25.39 0 No Yes 4 3 1 2
R:R:A196 R:R:L198 3.15 0 No No 1 4 2 1
L:L:?1 R:R:S169 2.64 1 Yes No 0 5 0 1
L:L:?1 R:R:L165 2.43 1 Yes No 0 4 0 1
L:L:?1 R:R:A205 1.38 1 Yes No 0 5 0 1
R:R:E34 R:R:K275 1.35 0 No No 4 1 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JH5_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.17
Number of Linked Nodes 246
Number of Links 262
Number of Hubs 31
Number of Links mediated by Hubs 129
Number of Communities 6
Number of Nodes involved in Communities 34
Number of Links involved in Communities 43
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 35102
Length Of Smallest Path 3
Average Path Length 12.8532
Length of Longest Path 28
Minimum Path Strength 1.47
Average Path Strength 6.46817
Maximum Path Strength 26.31
Minimum Path Correlation 0.7
Average Path Correlation 0.909197
Maximum Path Correlation 0.98
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 40.4808
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.3488
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code16C
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code16C
NameN-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE
SynonymsC16-CERAMIDE; N-PALMITOYL-D-ERYTHRO-SPHINGOSINE; (2S,3R,4E)-2-PALMITOYLAMINOOCTADEC-4-ENE-1,3-DIOL; (2S,3R,4E)-2-PALMITOYLAMINO-1,3-OCTADEC-4-ENEDIOL
Identifier
FormulaC34 H67 N O3
Molecular Weight537.901
SMILES
PubChem5283564
Formal Charge0
Total Atoms105
Total Chiral Atoms2
Total Bonds104
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NS75
Sequence
>9JH5_nogp_Chain_R
ENFKREFPI VYLIIFFWG VLGNGLSIY VFLQPYKKS TSVNVFMLN 
LAISDLLFI STLPFRADY YLRGSNWIF GDLACRIMS YSLYVNMYS 
SIYFLTVLS VVRFLAMVH PFRLLHVTS IRSAWILCG IIWILIMAS 
SIMLLDYKI AKLQTMNYI ALVVGCLLP FFTLSICYL LIIRVLLKG 
LRVSHRKAL TTIIITLII FFLCFLPYH TLRTVHLTT WKVGLCKDR 
LHKALVITL ALAAANACF NPLLYYFAG ENFKDRL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6RZ6ALipidLeukotrieneCysLT2Homo sapiensONO-2570366--2.432019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ7ALipidLeukotrieneCysLT2Homo sapiensONO-2570366--2.432019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ8ALipidLeukotrieneCysLT2Homo sapiensONO-2080365--2.72019-12-11doi.org/10.1038/s41467-019-13348-2
6RZ9ALipidLeukotrieneCysLT2Homo sapiensONO-2770372--2.732019-12-11doi.org/10.1038/s41467-019-13348-2
9JH5ALipidLeukotrieneCysLT2Homo sapiensC16:0 Ceramide-chim(NtGi1-Gs-CtGq)/β1/γ22.762025-04-23doi.org/10.1038/s41586-025-08792-8
9JH5 (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensC16:0 Ceramide-2.762025-04-23doi.org/10.1038/s41586-025-08792-8
9JH6ALipidLeukotrieneCysLT2Homo sapiensC20:0 Ceramide-chim(NtGi1-Gs-CtGq)/β1/γ22.892025-04-23doi.org/10.1038/s41586-025-08792-8
9JH6 (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensC20:0 Ceramide-2.892025-04-23doi.org/10.1038/s41586-025-08792-8
9IXXALipidLeukotrieneCysLT2Homo sapiensLTD4-chim(NtGi1-Gs-CtGq)/β1/γ23.152025-04-02doi.org/10.1073/pnas.2417148122
9IXX (No Gprot) ALipidLeukotrieneCysLT2Homo sapiensLTD4-3.152025-04-02doi.org/10.1073/pnas.2417148122




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JH5_nogp.zip



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