Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y139 9.0625404
2R:R:Y154 7.99407
3R:R:I157 5.34407
4R:R:L160 3.08406
5R:R:N165 5.3875409
6R:R:M178 7.0425408
7R:R:V181 3.125407
8R:R:N183 4.7075409
9R:R:F185 5.17508
10R:R:D193 6.3425409
11R:R:I210 6.47456
12R:R:W213 10.014537
13R:R:N217 2.9475403
14R:R:I229 3.8825407
15R:R:T237 6.4175408
16R:R:D244 4.0225449
17R:R:R245 5.612549
18R:R:F246 5.44598
19R:R:I265 2.425406
20R:R:M277 3.57428
21R:R:E289 4.895403
22R:R:V294 2.835403
23R:R:W312 9.684525
24R:R:R318 9.6525424
25R:R:Y321 5.1975428
26R:R:L325 4.185425
27R:R:I329 3.394506
28R:R:Y330 6.966518
29R:R:Y341 5.77409
30R:R:I344 3.9525409
31R:R:F385 7.775419
32R:R:W389 6.075618
33R:R:L392 3.015416
34R:R:W422 5.252566
35R:R:F425 6.5025477
36R:R:N427 5.8475419
37R:R:N431 4.098519
38R:R:I434 3.71419
39R:R:Y435 7.565419
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E289 R:R:V305 16.59952.85YesNo034
2R:R:V294 R:R:V305 18.82894.81YesNo034
3R:R:S303 R:R:V294 22.10581.62NoYes033
4R:R:P304 R:R:S303 23.18021.78NoNo043
5R:R:P304 R:R:Y306 24.16062.78NoNo045
6R:R:V286 R:R:Y306 26.26912.52NoNo055
7R:R:C308 R:R:V286 31.37261.71NoNo095
8R:R:C308 R:R:W213 32.236513.06NoYes397
9R:R:P214 R:R:W213 10.79772.7NoYes037
10R:R:F150 R:R:Y154 10.770910.32NoYes057
11R:R:F425 R:R:Y154 55.68544.13YesYes077
12R:R:C200 R:R:F425 53.40232.79NoYes077
13R:R:C200 R:R:Q227 48.59437.63NoNo077
14R:R:G224 R:R:Q227 47.76176.58NoNo047
15R:R:G224 R:R:S223 46.923.71NoNo045
16R:R:I203 R:R:S223 46.06954.64NoNo065
17R:R:F215 R:R:I203 44.14455.02NoNo376
18R:R:F215 R:R:W213 43.53123.01NoYes377
19R:R:W422 R:R:Y154 63.96285.79YesYes067
20R:R:I157 R:R:W422 66.451810.57YesYes076
21R:R:I157 R:R:M201 68.22455.83YesNo077
22R:R:F158 R:R:M201 68.45733.73NoNo867
23R:R:F158 R:R:M162 69.91678.71NoNo066
24R:R:G164 R:R:P432 16.39814.06NoNo089
25R:R:N165 R:R:P432 21.90443.26YesNo099
26R:R:L194 R:R:N165 71.00015.49NoYes089
27R:R:L194 R:R:M162 70.46292.83NoNo086
28R:R:D193 R:R:N165 80.08778.08YesYes099
29R:R:M178 R:R:N183 13.10774.21YesYes089
30R:R:I186 R:R:N183 23.94132.83NoYes089
31R:R:I186 R:R:Y435 25.481218.13NoYes089
32R:R:N431 R:R:Y435 47.78853.49YesYes199
33R:R:D193 R:R:N431 48.60334.04YesYes099
34R:R:M377 R:R:N439 13.02275.61NoNo088
35R:R:M377 R:R:Y435 22.3523.59NoYes089
36R:R:D244 R:R:T182 11.59014.34YesNo498
37R:R:I241 R:R:T182 42.59563.04NoNo098
38R:R:F185 R:R:I241 54.57075.02YesNo089
39R:R:F185 R:R:T237 56.31666.49YesYes088
40R:R:L189 R:R:T237 99.53447.37NoYes098
41R:R:L189 R:R:S234 1003NoNo099
42R:R:S192 R:R:S234 71.94914.89NoNo099
43R:R:D193 R:R:S192 70.93292.94YesNo099
44R:R:R245 R:R:T182 29.79237.76YesNo498
45R:R:N188 R:R:T237 18.55138.77NoYes098
46R:R:F185 R:R:I265 12.84363.77YesYes086
47R:R:I265 R:R:I269 12.45862.94YesNo068
48R:R:I269 R:R:T237 44.49823.04NoYes088
49R:R:N188 R:R:W270 15.5439.04NoNo099
50R:R:I229 R:R:W270 13.42112.35YesNo079
51R:R:I329 R:R:L325 35.032.85YesYes065
52R:R:F236 R:R:I329 43.22683.77NoYes066
53R:R:F236 R:R:I269 45.6898.79NoNo068
54R:R:N427 R:R:N431 33.43634.09YesYes199
55R:R:N427 R:R:W389 11.79163.39YesYes198
56R:R:F385 R:R:S234 31.09953.96YesNo099
57R:R:F385 R:R:N427 21.4888.46YesYes199
58R:R:I241 R:R:L378 11.37977.14NoNo098
59R:R:F246 R:R:I344 12.22585.02YesYes089
60R:R:I344 R:R:V249 18.11714.61YesNo099
61R:R:K371 R:R:V249 27.07053.04NoNo079
62R:R:K371 R:R:R245 28.40453.71NoYes479
63R:R:L325 R:R:Y321 30.63848.21YesYes258
64R:R:W312 R:R:Y321 29.00447.72YesYes258
65R:R:R318 R:R:W312 17.875414.99YesYes245
66R:R:W389 R:R:Y330 13.19281.93YesYes188
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9JG0
Class A
SubFamily Peptide
Type Neuropeptide FF
SubType NPFF2
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.91
Date 2025-04-09
D.O.I. doi.org/10.1038/s44319-025-00428-2
Net Summary
Imin 2.79
Number of Linked Nodes 271
Number of Links 298
Number of Hubs 39
Number of Links mediated by Hubs 142
Number of Communities 10
Number of Nodes involved in Communities 50
Number of Links involved in Communities 58
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 43978
Length Of Smallest Path 3
Average Path Length 16.7876
Length of Longest Path 46
Minimum Path Strength 1.07
Average Path Strength 5.26149
Maximum Path Strength 17.47
Minimum Path Correlation 0.7
Average Path Correlation 0.93084
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.5641
Average % Of Corr. Nodes 48.7856
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.3024
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y5X5
Sequence
>9JG0_Chain_R
ITYVNYYLH QPQVAAIFI ISYFLIFFL CMMGNTVVC FIVMRNKHM 
HTVTNLFIL NLAISDLLV GIFCMPITL LDNIIAGWP FGNTMCKIS 
GLVQGISVA ASVFTLVAI AVDRFQCVV YPFKPKLTI KTAFVIIMI 
IWVLAITIM SPSAVMLHV QEEKYYRVR LNKTSPVYW CREDWPNQE 
MRKIYTTVL FANIYLAPL SLIVIMYGR IGISRKKQK IIKMLLIVA 
LLFILSWLP LWTLMMLSD YADLSPNEL QIINIYIYP FAHWLAFGN 
SSVNPIIYG FFNENFRRG FQEAFQLQL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9JFYAPeptideNeuropeptide FFNPFF2Homo sapienshNPSF-Gi1/β1/γ23.212025-04-09doi.org/10.1038/s44319-025-00428-2
9JFY (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapienshNPSF-3.212025-04-09doi.org/10.1038/s44319-025-00428-2
9JG0APeptideNeuropeptide FFNPFF2Homo sapiens---2.912025-04-09doi.org/10.1038/s44319-025-00428-2
9M1OAPeptideNeuropeptide FFNPFF2Homo sapiensMorphine-Modulating Neuropeptide B-Gi1/β1/γ22.492025-07-23doi.org/10.1016/j.celrep.2025.116160
9M1O (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapiensMorphine-Modulating Neuropeptide B-2.492025-07-23doi.org/10.1016/j.celrep.2025.116160
9M54APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide VF-Gi1/β1/γ23.242025-07-23doi.org/10.1016/j.celrep.2025.116160
9M54 (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide VF-3.242025-07-23doi.org/10.1016/j.celrep.2025.116160




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JG0.zip



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