Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:F8 5.632510
2L:L:?9 6.48410
3R:R:Y136 11.8625424
4R:R:Y139 5.285404
5R:R:F185 4.445408
6R:R:N188 7.345409
7R:R:L189 6.78519
8R:R:D193 7.19519
9R:R:M201 6.64607
10R:R:T204 6.19616
11R:R:N208 6.3625415
12R:R:W213 6.18167617
13R:R:Q227 9.175417
14R:R:V235 4408
15R:R:F236 3.675606
16R:R:F246 9.9575438
17R:R:Y251 7.734536
18R:R:K254 4.96405
19R:R:M283 9.08405
20R:R:E289 6.22443
21R:R:R293 14.1075424
22R:R:L296 7.1025403
23R:R:W307 9.65504
24R:R:Y341 6.475409
25R:R:I375 5.02254107
26R:R:F385 4.96519
27R:R:W389 6.65833618
28R:R:W393 7.88667617
29R:R:M396 5.0875416
30R:R:D400 5.55405
31R:R:Y417 8.06667615
32R:R:H421 10.0575416
33R:R:F425 8.48333617
34R:R:N427 5.635419
35R:R:N431 8.515419
36R:R:Y435 5.1775409
37R:R:F442 5.928509
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:N3 R:R:W307 30.328415.82NoYes004
2L:L:N3 R:R:D207 31.228812.12NoNo005
3L:L:P5 R:R:Y417 11.090912.52NoYes005
4R:R:H421 R:R:Y417 95.35515.24YesYes165
5R:R:H421 R:R:T204 58.25569.58YesYes166
6R:R:N208 R:R:T204 45.18174.39YesYes156
7R:R:D207 R:R:N208 33.19764.04NoYes055
8R:R:M396 R:R:Y417 98.62443.59YesYes165
9R:R:M396 R:R:W393 97.54179.31YesYes167
10R:R:Q227 R:R:T204 22.13894.25YesYes176
11R:R:V305 R:R:W307 20.255814.71NoYes044
12R:R:V294 R:R:V305 19.19114.81NoNo034
13R:R:V294 R:R:Y139 18.119112.62NoYes034
14R:R:L296 R:R:Y139 14.86053.52YesYes034
15R:R:L296 R:R:S303 10.41566.01YesNo033
16R:R:I203 R:R:Q227 40.000716.47NoYes167
17R:R:I203 R:R:W213 33.68718.22NoYes167
18R:R:L206 R:R:W213 21.33134.56NoYes147
19R:R:I210 R:R:L206 19.24827.14NoNo064
20R:R:I209 R:R:I210 17.290210.3NoNo056
21R:R:I209 R:R:Y140 15.149910.88NoNo055
22R:R:A147 R:R:Y140 13.0064NoNo045
23R:R:F150 R:R:N208 12.6137.25NoYes155
24R:R:F150 R:R:H142 11.533916.97NoNo055
25R:R:F425 R:R:M201 21.5612.44YesYes077
26R:R:A147 R:R:I151 10.85861.62NoNo046
27R:R:W389 R:R:W393 89.60596.56YesYes187
28R:R:N427 R:R:W389 86.65456.78YesYes198
29R:R:L238 R:R:N427 88.90564.12NoYes199
30R:R:L238 R:R:Y435 1003.52NoYes099
31R:R:I241 R:R:Y435 78.57586.04NoYes099
32R:R:F185 R:R:I241 30.61785.02YesNo089
33R:R:D244 R:R:F185 26.44083.58NoYes098
34R:R:D244 R:R:T182 25.37965.78NoNo098
35R:R:I186 R:R:T182 24.24343.04NoNo088
36R:R:I186 R:R:N183 23.09644.25NoNo089
37R:R:F442 R:R:N183 20.78116.04YesNo099
38R:R:N427 R:R:N431 18.45146.81YesYes199
39R:R:D193 R:R:N431 20.745310.77YesYes199
40R:R:D193 R:R:N165 14.36026.73YesNo099
41R:R:I241 R:R:R245 57.39093.76NoNo099
42R:R:R245 R:R:Y341 39.99365.14NoYes099
43R:R:A242 R:R:Y341 23.6115.34NoYes089
44R:R:A242 R:R:M340 22.48543.22NoNo087
45R:R:F246 R:R:M340 20.2137.46YesNo087
46R:R:F246 R:R:Y251 16.65066.19YesYes386
47R:R:K254 R:R:Y251 14.3969.55YesYes056
48R:R:I329 R:R:W393 36.173911.74NoYes067
49R:R:I329 R:R:V235 24.36854.61NoYes068
50R:R:F236 R:R:V235 15.16783.93YesYes068
51R:R:I329 R:R:L325 37.94265.71NoNo065
52R:R:L325 R:R:Y321 36.427616.41NoNo058
53R:R:R318 R:R:Y321 30.35344.12NoNo048
54R:R:R318 R:R:W312 27.348417.99NoNo645
55R:R:M283 R:R:W312 26.008516.29YesNo055
56R:R:H285 R:R:M283 16.46845.25NoYes055
57R:R:H285 R:R:L284 13.23112.57NoNo055
58R:R:K221 R:R:L284 11.60188.46NoNo075
59R:R:M377 R:R:R245 17.63323.72NoNo089
60R:R:I434 R:R:Y435 21.96734.84NoYes099
61R:R:F438 R:R:I434 18.27998.79NoNo079
62R:R:F438 R:R:M377 16.764917.42NoNo078
63R:R:L378 R:R:Y341 17.6269.38NoYes089
64R:R:I344 R:R:L378 44.6352.85NoNo098
65R:R:L378 R:R:M377 31.24674.24NoNo088
66R:R:I344 R:R:V249 38.35716.14NoNo099
67R:R:L348 R:R:V249 31.97914.47NoNo099
68R:R:F326 R:R:W393 19.14827.02NoYes067
69R:R:F326 R:R:M397 14.531712.44NoNo066
70R:R:F385 R:R:L334 12.20214.87YesNo097
71R:R:K371 R:R:L348 28.78488.46NoNo079
72R:R:I375 R:R:K371 25.80134.36YesNo077
73R:R:I374 R:R:I375 12.92394.42NoYes087
74L:L:?9 R:R:H421 18.22996.36YesYes106
75L:L:?9 R:R:Q227 18.71589.88YesYes107
76R:R:F425 R:R:H421 18.389.05YesYes176
77R:R:F385 R:R:V235 19.05883.93YesYes098
78R:R:L238 R:R:N431 11.73764.12NoYes199
79R:R:F385 R:R:N427 21.06344.83YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:P2 R:R:E289 4.72 4 No Yes 0 3 0 1
L:L:P2 R:R:R309 4.32 4 No No 0 4 0 1
L:L:N3 R:R:D207 12.12 0 No No 0 5 0 1
L:L:N3 R:R:W307 15.82 0 No Yes 0 4 0 1
L:L:L4 R:R:N413 4.12 0 No No 0 5 0 1
L:L:P5 R:R:N413 6.52 0 No No 0 5 0 1
L:L:P5 R:R:Y417 12.52 0 No Yes 0 5 0 1
L:L:Q6 R:R:D207 11.75 0 No No 0 5 0 1
L:L:R7 R:R:M396 3.72 1 No Yes 0 6 0 1
L:L:R7 R:R:Y417 6.17 1 No Yes 0 5 0 1
L:L:F8 R:R:V231 6.55 1 Yes No 0 7 0 1
L:L:F8 R:R:M277 7.46 1 Yes No 0 8 0 1
L:L:F8 R:R:W393 4.01 1 Yes Yes 0 7 0 1
L:L:F8 R:R:M396 3.73 1 Yes Yes 0 6 0 1
L:L:?9 R:R:T204 3.65 1 Yes Yes 0 6 0 1
L:L:?9 R:R:Q227 9.88 1 Yes Yes 0 7 0 1
L:L:?9 R:R:H421 6.36 1 Yes Yes 0 6 0 1
L:L:?9 R:R:F425 6.03 1 Yes Yes 0 7 0 1
R:R:T204 R:R:Y154 7.49 1 Yes No 6 7 1 2
R:R:F425 R:R:Y154 7.22 1 Yes No 7 7 1 2
R:R:C200 R:R:Q227 6.1 0 No Yes 7 7 2 1
R:R:C200 R:R:F425 8.38 0 No Yes 7 7 2 1
R:R:F425 R:R:M201 12.44 1 Yes Yes 7 7 1 2
R:R:I203 R:R:Q227 16.47 1 No Yes 6 7 2 1
R:R:N208 R:R:T204 4.39 1 Yes Yes 5 6 2 1
R:R:Q227 R:R:T204 4.25 1 Yes Yes 7 6 1 1
R:R:H421 R:R:T204 9.58 1 Yes Yes 6 6 1 1
R:R:F425 R:R:T204 7.78 1 Yes Yes 7 6 1 1
R:R:D207 R:R:N208 4.04 0 No Yes 5 5 1 2
R:R:G212 R:R:W307 5.63 0 No Yes 5 4 2 1
R:R:G228 R:R:M277 5.24 0 No No 6 8 2 1
R:R:V231 R:R:W389 8.58 0 No Yes 7 8 1 2
R:R:M277 R:R:S280 4.6 0 No No 8 6 1 2
R:R:Q287 R:R:R309 18.69 0 No No 2 4 2 1
R:R:E289 R:R:W307 9.81 4 Yes Yes 3 4 1 1
R:R:E289 R:R:R309 6.98 4 Yes No 3 4 1 1
R:R:V305 R:R:W307 14.71 0 No Yes 4 4 2 1
R:R:F326 R:R:W393 7.02 0 No Yes 6 7 2 1
R:R:I329 R:R:W393 11.74 0 No Yes 6 7 2 1
R:R:W393 R:R:Y330 8.68 1 Yes No 7 8 1 2
R:R:W389 R:R:W393 6.56 1 Yes Yes 8 7 2 1
R:R:M396 R:R:W393 9.31 1 Yes Yes 6 7 1 1
R:R:L395 R:R:Y417 8.21 0 No Yes 6 5 2 1
R:R:M396 R:R:Y417 3.59 1 Yes Yes 6 5 1 1
R:R:L409 R:R:N413 6.87 0 No No 4 5 2 1
R:R:H421 R:R:Y417 15.24 1 Yes Yes 6 5 1 1
R:R:F425 R:R:H421 9.05 1 Yes Yes 7 6 1 1
R:R:E289 R:R:Y292 3.37 4 Yes No 3 1 1 2
R:R:A420 R:R:Y417 2.67 0 No Yes 7 5 2 1
R:R:L141 R:R:W307 2.28 0 No Yes 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9M54_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 295
Number of Links 326
Number of Hubs 37
Number of Links mediated by Hubs 141
Number of Communities 10
Number of Nodes involved in Communities 58
Number of Links involved in Communities 76
Path Summary
Number Of Nodes in MetaPath 80
Number Of Links MetaPath 79
Number of Shortest Paths 60228
Length Of Smallest Path 3
Average Path Length 15.5001
Length of Longest Path 38
Minimum Path Strength 1.47
Average Path Strength 7.00869
Maximum Path Strength 17.14
Minimum Path Correlation 0.7
Average Path Correlation 0.932094
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 48.7618
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.7136
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y5X5
Sequence
>9M54_nogp_Chain_R
NITYVNYYL HQPQVAAIF IISYFLIFF LCMMGNTVV CFIVMRNKH 
MHTVTNLFI LNLAISDLL VGIFCMPIT LLDNIIAGW PFGNTMCKI 
SGLVQGISV AASVFTLVA IAVDRFQCV VYPFKPKLT IKTAFVIIM 
IIWVLAITI MSPSAVMLH VQEEKYYRV RLNSQNKTS PVYWCREDW 
PNQEMRKIY TTVLFANIY LAPLSLIVI MYGRIGISL FRKKQKIIK 
MLLIVALLF ILSWLPLWT LMMLSDYAD LSPNELQII NIYIYPFAH 
WLAFGNSSV NPIIYGFFN ENFRR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9JFYAPeptideNeuropeptide FFNPFF2Homo sapienshNPSF-Gi1/β1/γ23.212025-04-09doi.org/10.1038/s44319-025-00428-2
9JFY (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapienshNPSF-3.212025-04-09doi.org/10.1038/s44319-025-00428-2
9JG0APeptideNeuropeptide FFNPFF2Homo sapiens---2.912025-04-09doi.org/10.1038/s44319-025-00428-2
9M1OAPeptideNeuropeptide FFNPFF2Homo sapiensMorphine-Modulating Neuropeptide B-Gi1/β1/γ22.492025-07-23doi.org/10.1016/j.celrep.2025.116160
9M1O (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapiensMorphine-Modulating Neuropeptide B-2.492025-07-23doi.org/10.1016/j.celrep.2025.116160
9M54APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide VF-Gi1/β1/γ23.242025-07-23doi.org/10.1016/j.celrep.2025.116160
9M54 (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide VF-3.242025-07-23doi.org/10.1016/j.celrep.2025.116160




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9M54_nogp.zip



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