Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:F4 6.826540
2L:L:F6 6.702540
3L:L:R10 6.388520
4L:L:F11 5.6525400
5L:L:?12 4.558510
6R:R:I134 4.88433
7R:R:F150 5.655405
8R:R:Y154 3.89407
9R:R:I157 5.7075407
10R:R:N165 5.976509
11R:R:F185 3.674508
12R:R:L189 7.1175499
13R:R:D193 6.434599
14R:R:M201 4.248507
15R:R:W213 8.442517
16R:R:F215 8.9875407
17R:R:C220 6.44419
18R:R:Q227 4.115407
19R:R:F246 7.1825408
20R:R:I266 3.975408
21R:R:M277 4.242508
22R:R:M283 4.56525
23R:R:E289 4.35453
24R:R:K290 5.1875433
25R:R:Y292 6.066541
26R:R:R293 4.835434
27R:R:W307 10.5575404
28R:R:C308 5.8525419
29R:R:E310 9.2275425
30R:R:W312 10.05525
31R:R:R318 11.135404
32R:R:Y341 8.335409
33R:R:I344 4.0725409
34R:R:W389 7.4625408
35R:R:W393 7.01833667
36R:R:L404 5.774125
37R:R:Q410 4.67441
38R:R:I414 6.64444
39R:R:Y417 4.846505
40R:R:H421 5.898516
41R:R:W422 8.06406
42R:R:F442 3.875609
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:F4 R:R:W307 16.87667.02YesYes004
2L:L:F4 L:L:F6 35.22455.36YesYes400
3L:L:L5 R:R:L409 10.47794.15NoNo004
4L:L:L5 R:R:Q410 12.44965.32NoYes001
5L:L:F6 R:R:L141 23.21597.31YesNo004
6L:L:F6 R:R:I414 23.38558.79YesYes404
7R:R:H421 R:R:Y417 10.68573.27YesYes065
8R:R:H421 R:R:Y154 80.95243.27YesYes067
9R:R:P418 R:R:Y154 75.32122.78NoYes057
10R:R:F150 R:R:P418 74.47318.67YesNo055
11R:R:F150 R:R:H142 69.20666.79YesNo055
12R:R:H142 R:R:L141 24.2593.86NoNo054
13R:R:H142 R:R:I414 44.0363.98NoYes054
14L:L:?12 R:R:H421 45.0079.55YesYes106
15L:L:?12 L:L:Q9 38.22243.29YesNo100
16L:L:Q9 R:R:W213 21.33324.38NoYes107
17L:L:Q9 R:R:C220 15.8084.58NoYes109
18L:L:?12 L:L:F11 76.80533.01YesYes000
19L:L:F11 L:L:R10 48.84876.41YesYes000
20L:L:R10 R:R:E310 21.89718.14YesYes205
21L:L:R10 R:R:Y321 22.04557.2YesNo208
22L:L:F11 R:R:W393 36.04294.01YesYes007
23L:L:?12 R:R:Q227 51.87213.29YesYes007
24R:R:L205 R:R:Y154 13.79384.69NoYes067
25R:R:I209 R:R:L205 11.3095.71NoNo756
26R:R:I209 R:R:I210 10.31252.94NoNo056
27R:R:W422 R:R:Y154 11.91964.82YesYes067
28R:R:F425 R:R:H421 51.52447.92NoYes076
29R:R:F425 R:R:M201 15.43916.22NoYes077
30R:R:C200 R:R:F425 50.91384.19NoNo077
31R:R:C200 R:R:V196 1003.42NoNo078
32R:R:S428 R:R:V196 98.51163.23NoNo098
33R:R:D193 R:R:S428 97.99867.36YesNo099
34R:R:D193 R:R:N165 41.27555.39YesYes099
35R:R:A190 R:R:N165 26.11633.13NoYes099
36R:R:A190 R:R:C169 23.65691.81NoNo097
37R:R:C169 R:R:L187 21.16353.17NoNo076
38R:R:L187 R:R:V172 18.57695.96NoNo1068
39R:R:F442 R:R:V172 17.362.62YesNo098
40R:R:D193 R:R:L189 70.28798.14YesYes999
41R:R:L189 R:R:T237 68.871711.79YesNo098
42R:R:N188 R:R:T237 68.01518.77NoNo098
43R:R:I266 R:R:N188 66.77692.83YesNo089
44R:R:F185 R:R:I266 63.16412.51YesYes088
45R:R:F185 R:R:I241 47.33493.77YesNo089
46R:R:F185 R:R:I265 10.72383.77YesNo086
47R:R:C308 R:R:W213 13.01367.84YesYes197
48R:R:C220 R:R:C308 12.25037.28YesYes199
49R:R:C308 R:R:V286 22.7415.12YesNo095
50R:R:L325 R:R:Y321 21.748712.89NoNo058
51R:R:L325 R:R:M277 20.35792.83NoYes058
52R:R:I241 R:R:R245 39.8383.76NoNo099
53R:R:R245 R:R:Y341 38.76959.26NoYes099
54R:R:L378 R:R:Y341 35.415315.24NoYes089
55R:R:I344 R:R:L378 33.15952.85YesNo098
56R:R:F246 R:R:I344 16.02433.77YesYes089
57R:R:E310 R:R:M283 10.11756.77YesYes255
58R:R:E310 R:R:W312 11.554915.27YesYes255
59R:R:V286 R:R:Y306 15.23563.79NoNo055
60R:R:P304 R:R:Y306 10.17262.78NoNo1145
61R:R:W389 R:R:W393 22.70286.56YesYes087
62R:R:F385 R:R:W389 12.34366.01NoYes098
63R:R:F385 R:R:L334 10.82982.44NoNo097
64R:R:G345 R:R:I344 16.00733.53NoYes069
65R:R:G345 R:R:L348 13.42071.71NoNo069
66R:R:K371 R:R:L348 12.11044.23NoNo079
67R:R:I414 R:R:Q410 17.60594.12YesYes441
68R:R:C200 R:R:Q227 50.076.1NoYes077
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:Q2 R:R:Q287 12.8 5 No No 0 2 0 1
L:L:Q2 R:R:E289 6.37 5 No Yes 0 3 0 1
L:L:F4 R:R:G212 3.01 4 Yes No 0 5 0 1
L:L:F4 R:R:Y292 8.25 4 Yes Yes 0 1 0 1
L:L:F4 R:R:V305 10.49 4 Yes No 0 4 0 1
L:L:F4 R:R:W307 7.02 4 Yes Yes 0 4 0 1
L:L:L5 R:R:L409 4.15 0 No No 0 4 0 1
L:L:L5 R:R:Q410 5.32 0 No Yes 0 1 0 1
L:L:F6 R:R:L141 7.31 4 Yes No 0 4 0 1
L:L:F6 R:R:Y292 6.19 4 Yes Yes 0 1 0 1
L:L:F6 R:R:Q410 5.86 4 Yes Yes 0 1 0 1
L:L:F6 R:R:I414 8.79 4 Yes Yes 0 4 0 1
L:L:Q7 R:R:W307 9.86 0 No Yes 0 4 0 1
L:L:P8 R:R:Y417 5.56 0 No Yes 0 5 0 1
L:L:Q9 R:R:W213 4.38 1 No Yes 0 7 0 1
L:L:Q9 R:R:C220 4.58 1 No Yes 0 9 0 1
L:L:R10 R:R:E310 8.14 2 Yes Yes 0 5 0 1
L:L:R10 R:R:Y321 7.2 2 Yes No 0 8 0 1
L:L:R10 R:R:T322 6.47 2 Yes No 0 6 0 1
L:L:R10 R:R:M396 3.72 2 Yes No 0 6 0 1
L:L:F11 R:R:V231 9.18 0 Yes No 0 7 0 1
L:L:F11 R:R:W393 4.01 0 Yes Yes 0 7 0 1
L:L:?12 R:R:T204 3.65 1 Yes No 0 6 0 1
L:L:?12 R:R:Q227 3.29 1 Yes Yes 0 7 0 1
L:L:?12 R:R:H421 9.55 1 Yes Yes 0 6 0 1
R:R:T135 R:R:Y292 9.99 0 No Yes 4 1 2 1
R:R:H142 R:R:L141 3.86 0 No No 5 4 2 1
R:R:H142 R:R:I414 3.98 0 No Yes 5 4 2 1
R:R:H421 R:R:Y154 3.27 1 Yes Yes 6 7 1 2
R:R:C200 R:R:Q227 6.1 0 No Yes 7 7 2 1
R:R:C200 R:R:F425 4.19 0 No No 7 7 2 2
R:R:N208 R:R:T204 2.92 0 No No 5 6 2 1
R:R:H421 R:R:T204 5.48 1 Yes No 6 6 1 1
R:R:F215 R:R:W213 18.04 0 Yes Yes 7 7 2 1
R:R:G216 R:R:W213 2.81 0 No Yes 8 7 2 1
R:R:C220 R:R:W213 9.14 1 Yes Yes 9 7 1 1
R:R:C308 R:R:W213 7.84 1 Yes Yes 9 7 2 1
R:R:C220 R:R:L284 4.76 1 Yes No 9 5 1 2
R:R:C220 R:R:C308 7.28 1 Yes Yes 9 9 1 2
R:R:Q227 R:R:S223 4.33 0 Yes No 7 5 1 2
R:R:E310 R:R:M283 6.77 2 Yes Yes 5 5 1 2
R:R:M283 R:R:W312 6.98 2 Yes Yes 5 5 2 2
R:R:C308 R:R:L284 3.17 1 Yes No 9 5 2 2
R:R:E289 R:R:Q287 3.82 5 Yes No 3 2 1 1
R:R:Q287 R:R:R309 5.84 5 No No 2 4 1 2
R:R:E289 R:R:V305 2.85 5 Yes No 3 4 1 1
R:R:E289 R:R:W307 4.36 5 Yes Yes 3 4 1 1
R:R:Q410 R:R:Y292 3.38 4 Yes Yes 1 1 1 1
R:R:R309 R:R:W307 20.99 0 No Yes 4 4 2 1
R:R:E310 R:R:W312 15.27 2 Yes Yes 5 5 1 2
R:R:E310 R:R:Y321 6.73 2 Yes No 5 8 1 1
R:R:L325 R:R:Y321 12.89 0 No No 5 8 2 1
R:R:D400 R:R:T322 8.67 0 No No 5 6 2 1
R:R:F326 R:R:Y330 7.22 6 No No 6 8 2 2
R:R:F326 R:R:W393 9.02 6 No Yes 6 7 2 1
R:R:I329 R:R:W393 8.22 0 No Yes 6 7 2 1
R:R:W393 R:R:Y330 9.65 6 Yes No 7 8 1 2
R:R:W389 R:R:W393 6.56 0 Yes Yes 8 7 2 1
R:R:L392 R:R:M396 4.24 0 No No 6 6 2 1
R:R:M396 R:R:W393 4.65 0 No Yes 6 7 1 1
R:R:L395 R:R:Y417 8.21 0 No Yes 6 5 2 1
R:R:I414 R:R:Q410 4.12 4 Yes Yes 4 1 1 1
R:R:N413 R:R:Y417 4.65 0 No Yes 5 5 2 1
R:R:I414 R:R:Y415 9.67 4 Yes No 4 3 1 2
R:R:H421 R:R:Y417 3.27 1 Yes Yes 6 5 1 1
R:R:F425 R:R:H421 7.92 0 No Yes 7 6 2 1
R:R:L404 R:R:L409 2.77 12 Yes No 5 4 2 1
R:R:I203 R:R:Q227 2.74 0 No Yes 6 7 2 1
R:R:S399 R:R:Y417 2.54 0 No Yes 4 5 2 1
R:R:V137 R:R:Y292 2.52 0 No Yes 2 1 2 1
R:R:A211 R:R:G212 1.95 0 No No 4 5 2 1
L:L:P8 R:R:D207 1.61 0 No No 0 5 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JFY_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.78
Number of Linked Nodes 289
Number of Links 321
Number of Hubs 42
Number of Links mediated by Hubs 151
Number of Communities 13
Number of Nodes involved in Communities 52
Number of Links involved in Communities 62
Path Summary
Number Of Nodes in MetaPath 69
Number Of Links MetaPath 68
Number of Shortest Paths 53220
Length Of Smallest Path 3
Average Path Length 14.7208
Length of Longest Path 34
Minimum Path Strength 1.26
Average Path Strength 5.48912
Maximum Path Strength 15.63
Minimum Path Correlation 0.7
Average Path Correlation 0.939797
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 55.2439
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.6199
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?12
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainL
ProteinNeuropeptide-SF
UniProtO15130
Sequence
>9JFY_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtQ9Y5X5
Sequence
>9JFY_nogp_Chain_R
INITYVNYY LHQPQVAAI FIISYFLIF FLCMMGNTV VCFIVMRNK 
HMHTVTNLF ILNLAISDL LVGIFCMPI TLLDNIIAG WPFGNTMCK 
ISGLVQGIS VAASVFTLV AIAVDRFQC VVYPFKPKL TIKTAFVII 
MIIWVLAIT IMSPSAVML HVQEEKYYR VRLNSQNKT SPVYWCRED 
WPNQEMRKI YTTVLFANI YLAPLSLIV IMYGRIGIS LFRVVSRKK 
QKIIKMLLI VALLFILSW LPLWTLMML SDYADLSPN ELQIINIYI 
YPFAHWLAF GNSSVNPII YGFFNENFR R


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9JFYAPeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide-SF-Gi1/β1/γ23.212025-04-09doi.org/10.1038/s44319-025-00428-2
9JFY (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide-SF-3.212025-04-09doi.org/10.1038/s44319-025-00428-2
9JG0APeptideNeuropeptide FFNPFF2Homo sapiens---2.912025-04-09doi.org/10.1038/s44319-025-00428-2
9M1OAPeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide-FF-Gi1/β1/γ22.492025-07-23doi.org/10.1016/j.celrep.2025.116160
9M1O (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide-FF-2.492025-07-23doi.org/10.1016/j.celrep.2025.116160
9M54APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide-VF-Gi1/β1/γ23.242025-07-23doi.org/10.1016/j.celrep.2025.116160
9M54 (No Gprot) APeptideNeuropeptide FFNPFF2Homo sapiensNeuropeptide-VF-3.242025-07-23doi.org/10.1016/j.celrep.2025.116160




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JFY_nogp.zip



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