Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:M59 5.0325407
2R:R:T62 3.5075408
3R:R:N66 6.382509
4R:R:L68 3.8825408
5R:R:L79 8.435409
6R:R:Q83 6.1675429
7R:R:N84 4.802529
8R:R:L90 5.8025449
9R:R:M111 2.095407
10R:R:C121 4.37439
11R:R:F131 6.8825417
12R:R:H138 8.325408
13R:R:Y147 5.7975408
14R:R:R160 9.5525427
15R:R:F220 8.986519
16R:R:Y231 4.9325409
17R:R:Y235 4.9825458
18R:R:F398 5.3825419
19R:R:W402 8.54667619
20R:R:F403 4.4175407
21R:R:F405 7.68518
22R:R:F406 8.054518
23R:R:Y409 6.598518
24R:R:Y431 6.522518
25R:R:N437 7.3125449
26L:L:?1 10.4221010
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:T48 R:R:V110 11.12541.59NoNo047
2R:R:A55 R:R:L106 24.53274.73NoNo058
3R:R:L106 R:R:V52 23.08882.98NoNo086
4R:R:T48 R:R:V52 20.18181.59NoNo046
5R:R:A55 R:R:G56 25.96361.95NoNo056
6R:R:G56 R:R:M59 27.37533.49NoYes067
7R:R:I102 R:R:M59 31.532810.2NoYes087
8R:R:N66 R:R:T62 25.9832.92YesYes098
9R:R:D94 R:R:N66 18.621912.12NoYes099
10R:R:D94 R:R:N437 21.29045.39NoYes099
11R:R:L90 R:R:N437 27.36888.24YesYes499
12R:R:H138 R:R:L90 99.35546.43YesYes089
13R:R:H138 R:R:W173 99.9427.41YesNo089
14R:R:S134 R:R:W173 99.99367.41NoNo089
15R:R:S134 R:R:S176 1003.26NoNo088
16R:R:S176 R:R:T133 94.35994.8NoNo088
17R:R:S219 R:R:T133 94.26326.4NoNo088
18L:L:?1 R:R:S219 94.20523.45YesNo008
19L:L:?1 R:R:Y431 57.3748.09YesYes108
20R:R:I102 R:R:Y431 55.92373.63NoYes088
21R:R:N66 R:R:P438 18.62196.52YesNo099
22R:R:N437 R:R:P438 21.29043.26YesNo099
23R:R:F452 R:R:T442 15.32169.08NoNo089
24R:R:F448 R:R:T442 16.810614.27NoNo089
25R:R:F448 R:R:L79 22.58619.74NoYes089
26R:R:L79 R:R:N84 29.51535.49YesYes099
27R:R:N84 R:R:Q83 35.96115.28YesYes299
28R:R:Q83 R:R:R160 43.625111.68YesYes297
29R:R:R160 R:R:Y156 45.687815.43YesNo279
30R:R:W148 R:R:Y156 48.25967.72NoNo069
31R:R:W148 R:R:Y147 50.55434.82NoYes068
32R:R:V230 R:R:Y147 62.27927.57NoYes088
33R:R:S143 R:R:V230 63.26543.23NoNo098
34R:R:S143 R:R:Y231 64.23883.82NoYes099
35R:R:R146 R:R:Y231 72.78596.17NoYes099
36R:R:R146 R:R:Y441 81.16546.17NoNo099
37R:R:L139 R:R:Y441 87.469410.55NoNo089
38R:R:L139 R:R:L90 71.69655.54NoYes489
39R:R:F452 R:R:L68 12.33088.53NoYes088
40R:R:F86 R:R:I142 13.8523.77NoNo089
41R:R:I142 R:R:R146 15.28943.76NoNo099
42R:R:D128 R:R:V101 11.0035.84NoNo188
43R:R:S105 R:R:Y124 27.12393.82NoNo087
44R:R:I102 R:R:S105 28.53553.1NoNo088
45R:R:C121 R:R:L125 15.3994.76YesNo397
46R:R:L125 R:R:Y124 24.41023.52NoNo077
47L:L:?1 R:R:W402 14.81247.86YesYes109
48L:L:?1 R:R:Y409 12.65956.29YesYes108
49R:R:C216 R:R:F406 11.18342.79NoYes078
50L:L:?1 R:R:F406 39.01643.73YesYes108
51R:R:F220 R:R:F406 32.718822.51YesYes198
52R:R:F220 R:R:F398 11.01593.22YesYes199
53R:R:F220 R:R:F403 15.66334.29YesYes097
54R:R:L391 R:R:Y231 11.99564.69NoYes089
55R:R:L391 R:R:Y235 10.5842.34NoYes088
56R:R:V393 R:R:V397 10.95781.6NoNo078
57R:R:I440 R:R:V397 12.47264.61NoNo088
58R:R:I440 R:R:Y441 13.97453.63NoNo089
59R:R:F403 R:R:F407 11.4096.43YesNo077
60R:R:L139 R:R:N437 16.378812.36NoYes489
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D128 R:R:V101 5.84 1 No No 8 8 1 2
R:R:I102 R:R:Y431 3.63 0 No Yes 8 8 2 1
R:R:D128 R:R:Y431 5.75 1 No Yes 8 8 1 1
L:L:?1 R:R:D128 13.52 1 Yes No 0 8 0 1
R:R:S180 R:R:V129 6.46 0 No No 8 8 2 1
L:L:?1 R:R:V129 20.55 1 Yes No 0 8 0 1
R:R:C132 R:R:W402 5.22 0 No Yes 7 9 2 1
R:R:S219 R:R:T133 6.4 0 No No 8 8 1 2
R:R:I136 R:R:W402 7.05 0 No Yes 9 9 2 1
R:R:I205 R:R:Y409 8.46 0 No Yes 7 8 2 1
R:R:S215 R:R:Y211 5.09 0 No No 9 8 1 2
R:R:V212 R:R:Y409 3.79 0 No Yes 7 8 2 1
L:L:?1 R:R:S215 8.06 1 Yes No 0 9 0 1
L:L:?1 R:R:S219 3.45 1 Yes No 0 8 0 1
R:R:F220 R:R:F406 22.51 1 Yes Yes 9 8 2 1
R:R:F406 R:R:W402 8.02 1 Yes Yes 8 9 1 1
R:R:G430 R:R:W402 8.44 0 No Yes 8 9 2 1
R:R:N433 R:R:W402 14.69 0 No Yes 9 9 2 1
L:L:?1 R:R:W402 7.86 1 Yes Yes 0 9 0 1
R:R:F405 R:R:F406 3.22 1 Yes Yes 8 8 1 1
R:R:F405 R:R:Y409 10.32 1 Yes Yes 8 8 1 1
R:R:F405 R:R:F423 6.43 1 Yes No 8 6 1 2
R:R:F405 R:R:F427 5.36 1 Yes No 8 7 1 1
L:L:?1 R:R:F405 13.07 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F406 3.73 1 Yes Yes 0 8 0 1
R:R:F423 R:R:Y409 4.13 1 No Yes 6 8 2 1
L:L:?1 R:R:Y409 6.29 1 Yes Yes 0 8 0 1
R:R:F427 R:R:Y431 10.32 1 No Yes 7 8 1 1
L:L:?1 R:R:F427 19.6 1 Yes No 0 7 0 1
R:R:W428 R:R:Y431 4.82 0 No Yes 7 8 2 1
L:L:?1 R:R:Y431 8.09 1 Yes Yes 0 8 0 1
R:R:C216 R:R:F406 2.79 0 No Yes 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EJ8_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.16
Number of Linked Nodes 248
Number of Links 259
Number of Hubs 26
Number of Links mediated by Hubs 102
Number of Communities 5
Number of Nodes involved in Communities 31
Number of Links involved in Communities 41
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 30719
Length Of Smallest Path 3
Average Path Length 15.8182
Length of Longest Path 41
Minimum Path Strength 1.16
Average Path Strength 6.17836
Maximum Path Strength 20.075
Minimum Path Correlation 0.7
Average Path Correlation 0.923874
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.85714
Average % Of Corr. Nodes 47.9186
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 33.3297
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJ59
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJ59
NameBrimonidine
SynonymsBrimonidine
Identifier
FormulaC11 H10 Br N5
Molecular Weight292.135
SMILES
PubChem2435
Formal Charge0
Total Atoms27
Total Chiral Atoms0
Total Bonds29
Total Aromatic Bonds11

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP08913
Sequence
>7EJ8_nogp_Chain_R
YSLQVTLTL VCLAGLLML LTVFGNVLV IIAVFTSRA LKAPQNLFL 
VSLASADIL VATLVIPFS LANEVMGYW YFGKAWCEI YLALDVLFC 
TSSIVHLCA ISLDRYWSI TQAIEYNLK RTPRRIKAI IITVWVISA 
VISFPPRCE INDQKWYVI SSCIGSFFA PCLIMILVY VRIYQIAKR 
RTRRGRQNR EKRFTFVLA VVIGVFVVC WFPFFFTYT LTAVGCSVP 
RTLFKFFFW FGYCNSSLN PVIYTIFNH DFRRAFKKI LC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6KUXAAmineAdrenergicα2aHomo sapiensRS-79948--2.72019-12-04doi.org/10.1038/nature06325
6KUYAAmineAdrenergicα2aHomo sapiensPubChem 145704643--3.22019-12-04doi.org/10.1038/nature06325
7EJ0AAmineAdrenergicα2aHomo sapiensL-Norepinephrine-Go/β1/γ23.22022-04-13doi.org/10.1126/sciadv.abj5347
7EJ0 (No Gprot) AAmineAdrenergicα2aHomo sapiensL-Norepinephrine-3.22022-04-13doi.org/10.1126/sciadv.abj5347
7EJ8AAmineAdrenergicα2aHomo sapiensBrimonidine-Go/β1/γ232022-04-13doi.org/10.1126/sciadv.abj5347
7EJ8 (No Gprot) AAmineAdrenergicα2aHomo sapiensBrimonidine-32022-04-13doi.org/10.1126/sciadv.abj5347
7EJAAAmineAdrenergicα2aHomo sapiensDexmedetomidine-Go/β1/γ23.62022-04-13doi.org/10.1126/sciadv.abj5347
7EJA (No Gprot) AAmineAdrenergicα2aHomo sapiensDexmedetomidine-3.62022-04-13doi.org/10.1126/sciadv.abj5347
7EJKAAmineAdrenergicα2aHomo sapiensOxymetazoline-Go/β1/γ23.42022-04-13doi.org/10.1126/sciadv.abj5347
7EJK (No Gprot) AAmineAdrenergicα2aHomo sapiensOxymetazoline-3.42022-04-13doi.org/10.1126/sciadv.abj5347
7W6PAAmineAdrenergicα2aHomo sapiensN-pyridin-4-ylisoquinolin-4-amine-Go/β1/γ23.472022-09-28doi.org/10.1126/science.abn7065
7W6P (No Gprot) AAmineAdrenergicα2aHomo sapiensN-pyridin-4-ylisoquinolin-4-amine-3.472022-09-28doi.org/10.1126/science.abn7065
7W7EAAmineAdrenergicα2aHomo sapiensPubChem 164946676-Go/β1/γ23.42022-09-28doi.org/10.1126/science.abn7065
7W7E (No Gprot) AAmineAdrenergicα2aHomo sapiensPubChem 164946676-3.42022-09-28doi.org/10.1126/science.abn7065
9CBLAAmineAdrenergicα2aHomo sapiensEpinephrine-Gi1/β1/γ22.82024-09-11doi.org/10.1038/s12276-024-01296-x
9CBL (No Gprot) AAmineAdrenergicα2aHomo sapiensEpinephrine-2.82024-09-11doi.org/10.1038/s12276-024-01296-x
9CBMAAmineAdrenergicα2aHomo sapiensDexmedetomidine-Gi1/β1/γ23.22024-09-11doi.org/10.1038/s12276-024-01296-x
9CBM (No Gprot) AAmineAdrenergicα2aHomo sapiensDexmedetomidine-3.22024-09-11doi.org/10.1038/s12276-024-01296-x
9IQRAAmineAdrenegicα2aHomo sapiens-Muscarinic toxin 3-3.42025-07-23To be published
9PLNAAmineAdrenegicα2aHomo sapiensN-(5-methylnaphthalen-1-yl)pyridin-4-amine--2.82025-08-20To be published
9PQDAAmineAdrenegicα2aHomo sapiens(6m)-1-methyl-6-(1,2,5,6-tetrahydropyridin-3-yl)-1h-indole--3.292025-08-20To be published
9PLOAAmineAdrenegicα2aHomo sapiensN-(5-methylnaphthalen-1-yl)pyridin-4-amine-Go/β1/γ22.742025-08-20To be published
9PLO (No Gprot) AAmineAdrenegicα2aHomo sapiensN-(5-methylnaphthalen-1-yl)pyridin-4-amine-2.742025-08-20To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7EJ8_nogp.zip



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