Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:T62 3.8025488
2R:R:N66 7.5075489
3R:R:V69 3.1825459
4R:R:F86 5.276508
5R:R:S89 5.65429
6R:R:D94 7.025489
7R:R:V101 5.352518
8R:R:W114 7.256108
9R:R:Y124 5.0425417
10R:R:F131 6.8125407
11R:R:H138 7.878528
12R:R:L139 4.7125498
13R:R:D145 7.635469
14R:R:Y147 9.2825438
15R:R:Y156 6.6175469
16R:R:R160 6.40167667
17R:R:W173 6.0725429
18R:R:Q208 8.9075446
19R:R:Y211 5.92448
20R:R:F220 10.215409
21R:R:M227 3.64509
22R:R:V230 4.415438
23R:R:Y231 6.73439
24R:R:F387 5.085478
25R:R:V394 3.06408
26R:R:W402 6.822509
27R:R:F405 9.105418
28R:R:F406 9.5175408
29R:R:F426 5.504507
30R:R:Y431 6.75333618
31R:R:Y441 5.3425499
32R:R:T442 4.83459
33R:R:F448 5.42333658
34R:R:F452 5.926558
35L:L:?1 12.9762810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L54 R:R:T50 17.01551.47NoNo053
2R:R:L51 R:R:L54 20.38884.15NoNo065
3R:R:K424 R:R:L51 23.45357.05NoNo076
4R:R:K424 R:R:W428 13.33379.28NoNo077
5R:R:F425 R:R:K424 39.84168.69NoNo067
6R:R:F425 R:R:L422 43.14291.22NoNo067
7R:R:F426 R:R:L422 49.71466.09YesNo077
8R:R:F405 R:R:F426 62.73464.29YesYes087
9R:R:F405 R:R:F427 13.68858.57YesNo187
10R:R:F427 R:R:Y431 14.20279.28NoYes178
11R:R:V101 R:R:Y431 44.58796.31YesYes188
12R:R:V101 R:R:V97 56.71313.21YesNo088
13R:R:F131 R:R:V97 55.83896.55YesNo078
14R:R:F131 R:R:L96 28.52886.09YesNo078
15R:R:I95 R:R:L96 24.92932.85NoNo088
16R:R:I95 R:R:N66 23.0735.66NoYes089
17R:R:N66 R:R:T62 13.52914.39YesYes898
18L:L:?1 R:R:F405 55.268213.91YesYes108
19L:L:?1 R:R:Y431 48.058815.31YesYes108
20L:L:?1 R:R:D128 30.847917.72YesNo108
21R:R:D128 R:R:V101 30.729710.22NoYes188
22R:R:F452 R:R:V69 17.14925.24YesYes589
23R:R:A91 R:R:V69 46.8711.7NoYes099
24R:R:A91 R:R:I70 48.89193.25NoNo098
25R:R:I70 R:R:V88 54.89284.61NoNo087
26R:R:V73 R:R:V88 56.87254.81NoNo087
27R:R:N84 R:R:V73 58.8424.43NoNo098
28R:R:N84 R:R:Q83 60.80122.64NoNo099
29R:R:D145 R:R:Q83 60.590310.44YesNo699
30R:R:D145 R:R:F86 88.02394.78YesYes098
31R:R:F86 R:R:I169 98.32362.51YesNo088
32R:R:I169 R:R:S89 1004.64NoYes089
33R:R:H138 R:R:S89 33.35739.76YesYes289
34R:R:H138 R:R:L90 49.26216.43YesNo089
35R:R:L90 R:R:N437 49.15934.12NoNo099
36R:R:L139 R:R:N437 36.26274.12YesNo989
37R:R:F398 R:R:L139 56.46124.87NoYes098
38R:R:F398 R:R:I136 47.71942.51NoNo099
39R:R:I136 R:R:W402 48.89195.87NoYes099
40R:R:C132 R:R:W402 65.3522.61NoYes079
41L:L:?1 R:R:C132 65.125711.66YesNo007
42R:R:S89 R:R:W173 69.95944.94YesYes299
43R:R:S134 R:R:W173 78.97366.18NoYes289
44R:R:S134 R:R:S176 88.93923.26NoNo088
45R:R:S176 R:R:T133 35.75873.2NoNo088
46R:R:S219 R:R:T133 37.19853.2NoNo088
47R:R:F406 R:R:S219 38.3712.64YesNo088
48R:R:F406 R:R:W402 24.97567.02YesYes089
49R:R:L130 R:R:S176 61.96333NoNo078
50R:R:F131 R:R:L130 61.02234.87YesNo077
51R:R:C216 R:R:F406 23.08846.98NoYes078
52R:R:C216 R:R:Y409 24.71854.03NoNo078
53L:L:?1 R:R:Y409 24.8115.74YesNo008
54R:R:F452 R:R:L68 13.31827.31YesNo088
55R:R:F448 R:R:V69 23.39182.62YesYes589
56R:R:S105 R:R:Y431 15.77622.54NoYes188
57R:R:V101 R:R:Y124 37.21913.79YesYes187
58R:R:S105 R:R:Y124 15.13862.54NoYes187
59R:R:P201 R:R:W114 11.451612.16NoYes038
60R:R:C121 R:R:W114 36.560910.45NoYes1098
61R:R:C121 R:R:L125 42.10931.59NoNo097
62R:R:L125 R:R:Y124 47.28753.52NoYes077
63R:R:F116 R:R:W114 14.290113.03NoYes078
64R:R:E122 R:R:P183 13.52391.57NoNo078
65R:R:P183 R:R:Q208 16.18766.32NoYes486
66R:R:Q208 R:R:Y211 24.30193.38YesYes468
67R:R:S215 R:R:Y211 35.00285.09NoYes098
68L:L:?1 R:R:S215 37.64083.68YesNo009
69R:R:L139 R:R:M227 44.34622.83YesYes089
70R:R:L139 R:R:Y441 12.35157.03YesYes989
71R:R:M227 R:R:S143 17.22636.13YesNo099
72R:R:S143 R:R:V230 13.09713.23NoYes398
73R:R:V394 R:R:Y441 21.522.52YesYes089
74R:R:D145 R:R:Y156 19.00554.6YesYes699
75R:R:V230 R:R:Y147 14.52677.57YesYes388
76R:R:F220 R:R:F406 20.028821.43YesYes098
77R:R:C224 R:R:F220 11.15859.78NoYes079
78R:R:C224 R:R:F398 10.94265.59NoNo079
79R:R:F220 R:R:F403 17.76624.29YesNo097
80R:R:I228 R:R:I395 21.46862.94NoNo067
81R:R:I395 R:R:M227 25.88061.46NoYes079
82R:R:K239 R:R:Y235 15.4422.39NoNo088
83R:R:K239 R:R:Q236 16.96418.14NoNo086
84R:R:Q236 R:R:V232 18.47591.43NoNo064
85R:R:I228 R:R:V232 19.97741.54NoNo064
86R:R:V393 R:R:V394 10.20211.6NoYes078
87R:R:F403 R:R:F407 15.58085.36NoNo077
88R:R:F407 R:R:L411 13.38518.53NoNo077
89R:R:L411 R:R:T412 11.17911.47NoNo075
90R:R:F448 R:R:N445 11.12777.25YesNo089
91R:R:F116 R:R:Y115 11.45162.06NoNo075
92R:R:R164 R:R:Y156 11.63682.06NoYes089
93R:R:N437 R:R:Y441 13.32346.98NoYes999
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:S105 R:R:V101 3.23 1 No Yes 8 8 2 2
R:R:D128 R:R:V101 10.22 1 No Yes 8 8 1 2
R:R:V101 R:R:Y431 6.31 1 Yes Yes 8 8 2 1
R:R:I102 R:R:Y431 3.63 0 No Yes 8 8 2 1
R:R:S105 R:R:Y431 2.54 1 No Yes 8 8 2 1
R:R:D128 R:R:Y431 3.45 1 No Yes 8 8 1 1
L:L:?1 R:R:D128 17.72 1 Yes No 0 8 0 1
L:L:?1 R:R:V129 10.94 1 Yes No 0 8 0 1
R:R:C132 R:R:W402 2.61 0 No Yes 7 9 1 2
L:L:?1 R:R:C132 11.66 1 Yes No 0 7 0 1
R:R:S215 R:R:Y211 5.09 0 No Yes 9 8 1 2
R:R:V212 R:R:Y409 8.83 0 No No 7 8 2 1
L:L:?1 R:R:S215 3.68 1 Yes No 0 9 0 1
R:R:C216 R:R:Y409 4.03 0 No No 7 8 2 1
R:R:F405 R:R:F423 9.65 1 Yes No 8 6 1 2
R:R:F405 R:R:F426 4.29 1 Yes Yes 8 7 1 2
R:R:F405 R:R:F427 8.57 1 Yes No 8 7 1 1
L:L:?1 R:R:F405 13.91 1 Yes Yes 0 8 0 1
L:L:?1 R:R:Y409 5.74 1 Yes No 0 8 0 1
R:R:F427 R:R:Y431 9.28 1 No Yes 7 8 1 1
L:L:?1 R:R:F427 24.85 1 Yes No 0 7 0 1
L:L:?1 R:R:Y431 15.31 1 Yes Yes 0 8 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EJA_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.51
Number of Linked Nodes 255
Number of Links 278
Number of Hubs 35
Number of Links mediated by Hubs 129
Number of Communities 11
Number of Nodes involved in Communities 47
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 94
Number Of Links MetaPath 93
Number of Shortest Paths 49829
Length Of Smallest Path 3
Average Path Length 15.845
Length of Longest Path 35
Minimum Path Strength 1.22
Average Path Strength 5.47556
Maximum Path Strength 21.285
Minimum Path Correlation 0.7
Average Path Correlation 0.930158
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 45.7044
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.4213
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCZX
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeCZX
NameDexmedetomidine
Synonymsdexemedetomidine
Identifier
FormulaC13 H16 N2
Molecular Weight200.28
SMILES
PubChem5311068
Formal Charge0
Total Atoms31
Total Chiral Atoms1
Total Bonds32
Total Aromatic Bonds11

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP08913
Sequence
>7EJA_nogp_Chain_R
YSLQVTLTL VCLAGLLML LTVFGNVLV IIAVFTSRA LKAPQNLFL 
VSLASADIL VATLVIPFS LANEVMGYW YFGKAWCEI YLALDVLFC 
TSSIVHLCA ISLDRYWSI TQAIEYNLK RTPRRIKAI IITVWVISA 
VISFPPLEP RCEINDQKW YVISSCIGS FFAPCLIMI LVYVRIYQI 
AKRRTRSRW RGRQNREKR FTFVLAVVI GVFVVCWFP FFFTYTLTA 
VGCSVPRTL FKFFFWFGY CNSSLNPVI YTIFNHDFR RAFKKILC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6KUXAAmineAdrenergicα2aHomo sapiensRS79948--2.72019-12-04doi.org/10.1038/nature06325
6KUYAAmineAdrenergicα2aHomo sapiensPubChem 145704643--3.22019-12-04doi.org/10.1038/nature06325
7EJ0AAmineAdrenergicα2aHomo sapiensNorepinephrine-Go/β1/γ23.22022-04-13doi.org/10.1126/sciadv.abj5347
7EJ0 (No Gprot) AAmineAdrenergicα2aHomo sapiensNorepinephrine-3.22022-04-13doi.org/10.1126/sciadv.abj5347
7EJ8AAmineAdrenergicα2aHomo sapiensBrimonidine-Go/β1/γ232022-04-13doi.org/10.1126/sciadv.abj5347
7EJ8 (No Gprot) AAmineAdrenergicα2aHomo sapiensBrimonidine-32022-04-13doi.org/10.1126/sciadv.abj5347
7EJAAAmineAdrenergicα2aHomo sapiensDexmedetomidine-Go/β1/γ23.62022-04-13doi.org/10.1126/sciadv.abj5347
7EJA (No Gprot) AAmineAdrenergicα2aHomo sapiensDexmedetomidine-3.62022-04-13doi.org/10.1126/sciadv.abj5347
7EJKAAmineAdrenergicα2aHomo sapiensOxymetazoline-Go/β1/γ23.42022-04-13doi.org/10.1126/sciadv.abj5347
7EJK (No Gprot) AAmineAdrenergicα2aHomo sapiensOxymetazoline-3.42022-04-13doi.org/10.1126/sciadv.abj5347
7W6PAAmineAdrenergicα2aHomo sapiensN-pyridin-4-ylisoquinolin-4-amine-Go/β1/γ23.472022-09-28doi.org/10.1126/science.abn7065
7W6P (No Gprot) AAmineAdrenergicα2aHomo sapiensN-pyridin-4-ylisoquinolin-4-amine-3.472022-09-28doi.org/10.1126/science.abn7065
7W7EAAmineAdrenergicα2aHomo sapiensPubChem 164946676-Go/β1/γ23.42022-09-28doi.org/10.1126/science.abn7065
7W7E (No Gprot) AAmineAdrenergicα2aHomo sapiensPubChem 164946676-3.42022-09-28doi.org/10.1126/science.abn7065
9CBLAAmineAdrenergicα2aHomo sapiensEpinephrine-Gi1/β1/γ22.82024-09-11doi.org/10.1038/s12276-024-01296-x
9CBL (No Gprot) AAmineAdrenergicα2aHomo sapiensEpinephrine-2.82024-09-11doi.org/10.1038/s12276-024-01296-x
9CBMAAmineAdrenergicα2aHomo sapiensDexmedetomidine-Gi1/β1/γ23.22024-09-11doi.org/10.1038/s12276-024-01296-x
9CBM (No Gprot) AAmineAdrenergicα2aHomo sapiensDexmedetomidine-3.22024-09-11doi.org/10.1038/s12276-024-01296-x
9IQRAAmineAdrenergicα2aHomo sapiens-Muscarinic toxin 3-3.42025-07-23To be published
9PLNAAmineAdrenergicα2aHomo sapiensPubChem 168259594--2.82025-08-20To be published
9PLOAAmineAdrenergicα2aHomo sapiensPubChem 168259594-Go/β1/γ22.742025-08-20To be published
9PLO (No Gprot) AAmineAdrenergicα2aHomo sapiensPubChem 168259594-2.742025-08-20To be published
9PQDAAmineAdrenergicα2aHomo sapiensPubChem 176491927--3.292025-08-20To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7EJA_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.