Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:Y2 11.1525420
2L:L:I3 4.805450
3L:L:C6 4.2525440
4L:L:?10 4.992540
5R:R:F77 7.7275408
6R:R:H80 6.8175409
7R:R:D85 7.5325439
8R:R:Q92 12.5925427
9R:R:Q96 9.14427
10R:R:F105 4.9407
11R:R:Y117 6.2275407
12R:R:Q119 7.49167627
13R:R:F124 6.92406
14R:R:Q171 9.7375456
15R:R:Q193 7.6425464
16R:R:I201 5.485405
17R:R:Y209 3.8075418
18R:R:L216 3.905418
19R:R:C219 3.458506
20R:R:Y220 6.76167619
21R:R:I280 6.34418
22R:R:W288 8.06167618
23R:R:F291 6.715407
24R:R:F292 7.495417
25R:R:Y329 5.9475409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?10 R:R:L316 26.98663.43YesNo005
2R:R:L316 R:R:M315 37.22912.83NoNo056
3R:R:F291 R:R:M315 38.61453.73YesNo076
4L:L:Y2 R:R:F291 59.16875.16YesYes007
5L:L:Y2 R:R:Q92 26.412719.16YesYes207
6L:L:Y2 R:R:Q119 26.98665.64YesYes207
7R:R:F291 R:R:F292 85.64089.65YesYes077
8R:R:F292 R:R:T205 83.60229.08YesNo075
9R:R:M296 R:R:T205 82.59284.52NoNo065
10R:R:I201 R:R:M296 80.51462.92YesNo056
11L:L:I3 R:R:I201 53.12222.94YesYes005
12L:L:I3 R:R:Q171 46.9578.23YesYes506
13R:R:I201 R:R:Q295 33.50826.86YesNo056
14L:L:Q4 R:R:Q295 31.746715.36NoNo006
15L:L:Q4 R:R:S298 21.4257.22NoNo005
16L:L:?10 R:R:E42 11.98429.84YesNo405
17R:R:E42 R:R:L38 10.18316.63NoNo055
18R:R:Q92 R:R:S319 25.3347.22YesNo077
19R:R:I49 R:R:S319 14.05241.55NoNo077
20R:R:C323 R:R:I49 12.10293.27NoNo077
21R:R:S319 R:R:V93 10.13363.23NoNo077
22R:R:F292 R:R:W288 1006.01YesYes178
23R:R:F284 R:R:W288 92.775815.03NoYes198
24R:R:F284 R:R:L216 95.59623.65NoYes198
25R:R:I280 R:R:L216 64.37414.28YesYes188
26R:R:I280 R:R:Y329 68.53044.84YesYes089
27R:R:N325 R:R:Y329 47.96646.98NoYes099
28R:R:N325 R:R:P326 44.75013.26NoNo099
29R:R:D85 R:R:P326 39.04014.83YesNo399
30R:R:M133 R:R:Y329 23.70117.18NoYes089
31R:R:F77 R:R:M133 21.96938.71YesNo088
32R:R:F76 R:R:F77 10.06435.36NoYes058
33R:R:D85 R:R:L81 32.07326.79YesNo099
34R:R:L129 R:R:L81 30.18315.54NoNo089
35R:R:H80 R:R:L129 26.31379YesNo098
36R:R:H80 R:R:W161 16.62543.17YesNo099
37R:R:V87 R:R:W161 10.70763.68NoNo069
38R:R:Q119 R:R:V115 24.52254.3YesNo276
39R:R:L111 R:R:V115 23.21622.98NoNo056
40R:R:F105 R:R:L111 17.50627.31YesNo075
41R:R:D186 R:R:F105 10.13363.58NoYes047
42R:R:Q171 R:R:V120 25.650710.03YesNo065
43R:R:S168 R:R:V120 23.85956.46NoNo075
44R:R:S168 R:R:Y117 20.07928.9NoYes077
45R:R:V172 R:R:Y117 12.2816.31NoYes057
46R:R:R113 R:R:V172 10.2823.92NoNo065
47R:R:F124 R:R:V208 10.18315.24YesNo065
48R:R:L216 R:R:S134 19.86153YesNo188
49R:R:C219 R:R:S134 24.20583.44YesNo068
50R:R:L216 R:R:Y220 20.03964.69YesYes189
51R:R:F175 R:R:Q171 23.859510.54NoYes066
52R:R:A189 R:R:F175 21.97928.32NoNo056
53R:R:A189 R:R:F191 20.07922.77NoNo056
54R:R:F191 R:R:P197 14.260326.01NoNo065
55R:R:G196 R:R:P197 12.2814.06NoNo045
56R:R:G196 R:R:Q193 10.2823.29NoYes044
57R:R:W288 R:R:Y209 14.12172.89YesYes188
58R:R:T277 R:R:Y220 16.06147.49NoYes089
59R:R:S224 R:R:T277 14.12176.4NoNo058
60R:R:S224 R:R:T273 10.18319.59NoNo058
61R:R:N321 R:R:W288 11.865414.69NoYes098
62R:R:F311 R:R:S298 15.73482.64NoNo045
63R:R:F311 R:R:V294 14.072210.49NoNo045
64R:R:F293 R:R:V294 10.16333.93NoNo055
65R:R:I280 R:R:Y220 10.846113.3YesYes189
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:Y2 R:R:Q92 19.16 2 Yes Yes 0 7 0 1
L:L:Y2 R:R:Q96 14.65 2 Yes Yes 0 7 0 1
L:L:Y2 R:R:Q119 5.64 2 Yes Yes 0 7 0 1
L:L:Y2 R:R:F291 5.16 2 Yes Yes 0 7 0 1
L:L:I3 R:R:Q171 8.23 5 Yes Yes 0 6 0 1
L:L:I3 R:R:Y200 3.63 5 Yes No 0 7 0 1
L:L:I3 R:R:I201 2.94 5 Yes Yes 0 5 0 1
L:L:I3 R:R:I204 4.42 5 Yes No 0 5 0 1
L:L:Q4 R:R:Q295 15.36 0 No No 0 6 0 1
L:L:Q4 R:R:S298 7.22 0 No No 0 5 0 1
L:L:N5 R:R:W188 13.56 0 No No 0 3 0 1
L:L:L8 R:R:I312 4.28 0 No No 0 4 0 1
L:L:?10 R:R:E42 9.84 4 Yes No 0 5 0 1
L:L:?10 R:R:I312 3.53 4 Yes No 0 4 0 1
L:L:?10 R:R:L316 3.43 4 Yes No 0 5 0 1
R:R:E42 R:R:L38 6.63 4 No No 5 5 1 2
R:R:E42 R:R:I312 4.1 4 No No 5 4 1 1
R:R:Q119 R:R:Q92 7.68 2 Yes Yes 7 7 1 1
R:R:M123 R:R:Q92 16.31 0 No Yes 6 7 2 1
R:R:Q92 R:R:S319 7.22 2 Yes No 7 7 1 2
R:R:P95 R:R:Q96 6.32 2 No Yes 4 7 2 1
R:R:P95 R:R:V115 3.53 2 No No 4 6 2 2
R:R:P95 R:R:Q119 6.32 2 No Yes 4 7 2 1
R:R:K116 R:R:Q96 4.07 2 No Yes 4 7 2 1
R:R:Q119 R:R:Q96 11.52 2 Yes Yes 7 7 1 1
R:R:D100 R:R:L316 4.07 0 No No 5 5 2 1
R:R:Q119 R:R:V115 4.3 2 Yes No 7 6 1 2
R:R:K116 R:R:Q119 9.49 2 No Yes 4 7 2 1
R:R:Q171 R:R:V120 10.03 5 Yes No 6 5 1 2
R:R:F175 R:R:Q171 10.54 0 No Yes 6 6 2 1
R:R:Q171 R:R:Y200 10.15 5 Yes No 6 7 1 1
R:R:R178 R:R:W188 6 0 No No 3 3 2 1
R:R:I204 R:R:Y200 13.3 5 No No 5 7 1 1
R:R:I201 R:R:Q295 6.86 0 Yes No 5 6 1 1
R:R:I201 R:R:M296 2.92 0 Yes No 5 6 1 2
R:R:I201 R:R:V299 9.22 0 Yes No 5 4 1 2
R:R:I204 R:R:W203 3.52 5 No No 5 4 1 2
R:R:F291 R:R:F292 9.65 0 Yes Yes 7 7 1 2
R:R:F291 R:R:M315 3.73 0 Yes No 7 6 1 2
R:R:A318 R:R:F291 8.32 0 No Yes 7 7 2 1
R:R:K306 R:R:S298 4.59 0 No No 4 5 2 1
R:R:L316 R:R:M315 2.83 0 No No 5 6 1 2
R:R:F311 R:R:S298 2.64 0 No No 4 5 2 1
L:L:L8 R:R:E307 1.33 0 No No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7QVM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.92
Number of Linked Nodes 243
Number of Links 252
Number of Hubs 25
Number of Links mediated by Hubs 92
Number of Communities 7
Number of Nodes involved in Communities 40
Number of Links involved in Communities 51
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 21913
Length Of Smallest Path 3
Average Path Length 12.8901
Length of Longest Path 31
Minimum Path Strength 1.38
Average Path Strength 6.34831
Maximum Path Strength 19.79
Minimum Path Correlation 0.7
Average Path Correlation 0.91096
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 42.866
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.4922
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?10
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP30559
Sequence
>7QVM_nogp_Chain_R
NEALARVEV AVLCLILLL ALSGNACVL LALRTTRQK HSRLFFFMK 
HLSIADLVV AVFQVLPQL LWDITFRFY GPDLLCRLV KYLQVVGMF 
ASTYLLLLM SLDRCLAIC QPRRTYRLA VLATWLGCL VASAPQVHI 
FSLREVFDC WAVFIQPWG PKAYITWIT LAVYIVPVI VLATCYGLI 
SFKIWQNKI RTVKMTFII VLAFIVCWT PFFFVQMWS VWDANAPKE 
ASAFIIVML LASLNSCCN PWIYMLFTG HLFH


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6OT0FProteinFrizzledSMOHomo sapiens-25(S)-EpoxycholesterolGi1/β1/γ23.842019-06-12doi.org/10.1038/s41586-019-1286-0
6OT0 (No Gprot) FProteinFrizzledSMOHomo sapiens-25(S)-Epoxycholesterol3.842019-06-12doi.org/10.1038/s41586-019-1286-0
8QOTAPeptideOpioidμMus musculusNanobody-E--3.22023-12-27doi.org/10.1101/2023.12.06.570395
6TOTAPeptideOrexinOX1Homo sapiensLemborexant--2.222020-01-15doi.org/10.1021/acs.jmedchem.9b01787
9NOTCSensoryTaste1TAS1R2; TAS1R3Homo sapiens---3.82025-04-09doi.org/10.1016/j.cell.2025.04.021
7QVMAPeptideVasopressin and OxytocinOTHomo sapiensOxytocin-chim(NtGi1-Go-CtGq)/β1/γ23.252022-08-10doi.org/10.1038/s41467-022-31325-0
7QVM (No Gprot) APeptideVasopressin and OxytocinOTHomo sapiensOxytocin-3.252022-08-10doi.org/10.1038/s41467-022-31325-0
7RYCAPeptideVasopressin and OxytocinOTHomo sapiensOxytocin-chim(NtGi2L-Gs-CtGq)/β1/γ22.92022-03-09doi.org/10.1038/s41594-022-00728-4
7RYC (No Gprot) APeptideVasopressin and OxytocinOTHomo sapiensOxytocin-2.92022-03-09doi.org/10.1038/s41594-022-00728-4
6TPKAPeptideVasopressin and OxytocinOTHomo sapiensRetosiban--3.22020-08-05doi.org/10.1126/sciadv.abb5419




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7QVM_nogp.zip



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