Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.37143710
2R:R:L3 2.29407
3R:R:F9 4.765406
4R:R:Y12 3.50833609
5R:R:N23 7.6225419
6R:R:L42 4.164557
7R:R:Y44 5.015407
8R:R:D52 6.266519
9R:R:L55 5.46833617
10R:R:T56 4.054516
11R:R:W72 11.274529
12R:R:C79 6.1025429
13R:R:H86 8.83416
14R:R:F88 5.53405
15R:R:F96 7.996546
16R:R:Y105 4.54407
17R:R:Y114 5.7725406
18R:R:W131 8.73449
19R:R:F142 5.21404
20R:R:W174 7.596574
21R:R:R183 10.41416
22R:R:F191 8.27833639
23R:R:C236 3.15498
24R:R:Y240 7.12667618
25R:R:N244 8.0125417
26R:R:F248 10.4625485
27R:R:R258 7.5617
28R:R:S268 3.6225409
29R:R:V269 4.91417
30R:R:Y278 7.5525457
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F87 26.444112.02YesNo106
2R:R:F87 R:R:H86 43.00183.39NoYes166
3R:R:H86 R:R:L55 56.98025.14YesYes167
4R:R:L55 R:R:L59 17.24232.77YesNo179
5R:R:L59 R:R:Y12 20.86253.52NoYes099
6R:R:I263 R:R:Y12 10.77874.84NoYes069
7R:R:L55 R:R:V269 48.44242.98YesYes177
8R:R:T56 R:R:V269 11.44786.35YesYes167
9R:R:D52 R:R:V269 40.88925.84YesYes197
10R:R:L55 R:R:P89 10013.14YesNo078
11R:R:P89 R:R:S51 49.0863.56NoNo088
12R:R:S51 R:R:W131 48.62963.71NoYes089
13R:R:N47 R:R:W131 43.240310.17NoYes499
14R:R:C127 R:R:N47 42.35836.3NoNo479
15R:R:C127 R:R:Y44 84.1142.69NoYes077
16R:R:L100 R:R:Y44 36.34598.21NoYes087
17R:R:L100 R:R:S41 20.54973NoNo087
18R:R:S41 R:R:Y278 18.5375.09NoYes077
19R:R:F88 R:R:P89 51.02437.22YesNo058
20R:R:F88 R:R:W131 49.65526.01YesYes059
21R:R:F96 R:R:W131 54.247115.03YesYes469
22R:R:C127 R:R:F96 43.66334.19NoYes476
23R:R:S123 R:R:Y44 42.74543.82NoYes087
24R:R:P40 R:R:S123 20.40367.13NoNo078
25R:R:S123 R:R:V43 20.64716.46NoNo087
26R:R:L38 R:R:V43 12.51442.98NoNo057
27R:R:P40 R:R:Y114 10.32484.17NoYes076
28R:R:F96 R:R:G93 11.09916.02YesNo069
29R:R:G93 R:R:G94 10.01212.11NoNo098
30R:R:D52 R:R:N272 33.11034.04YesNo099
31L:L:?1 R:R:F142 15.85786.47YesYes004
32R:R:H86 R:R:K62 16.675617.03YesNo067
33R:R:E65 R:R:K62 15.857810.8NoNo077
34R:R:C79 R:R:I160 10.75056.55YesNo092
35R:R:L100 R:R:R104 14.18110.93NoNo089
36L:L:?1 R:R:R183 11.809311.07YesYes106
37R:R:N244 R:R:S187 16.46285.96YesNo075
38R:R:N241 R:R:S187 15.70148.94NoNo095
39R:R:F191 R:R:N241 13.022122.96YesNo399
40R:R:F191 R:R:L233 15.91933.65YesNo399
41R:R:L233 R:R:T198 15.28864.42NoNo098
42R:R:S101 R:R:T198 14.22974.8NoNo098
43L:L:?1 R:R:R258 12.66065.54YesYes107
44R:R:R104 R:R:T276 10.44283.88NoNo097
45R:R:C201 R:R:S101 13.16571.72NoNo079
46R:R:F191 R:R:L195 11.46323.65YesNo396
47R:R:L195 R:R:L234 10.8122.77NoNo065
48R:R:S268 R:R:V237 28.73633.23YesNo098
49R:R:R258 R:R:S243 16.43211.32YesNo075
50R:R:S243 R:R:W257 13.18622.47NoNo055
51R:R:F87 R:R:Y240 16.11935.16NoYes168
52R:R:E65 R:R:W72 14.114315.27NoYes079
53R:R:N272 R:R:S268 29.73365.96NoYes099
54R:R:F191 R:R:V237 25.89545.24YesNo398
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F87 12.02 1 Yes No 0 6 0 1
L:L:?1 R:R:Y91 8.9 1 Yes No 0 8 0 1
L:L:?1 R:R:F142 6.47 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R183 11.07 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L186 3.15 1 Yes No 0 6 0 1
L:L:?1 R:R:Y240 4.45 1 Yes Yes 0 8 0 1
L:L:?1 R:R:R258 5.54 1 Yes Yes 0 7 0 1
R:R:F142 R:R:P80 4.33 0 Yes No 4 7 1 2
R:R:F87 R:R:H86 3.39 1 No Yes 6 6 1 2
R:R:F87 R:R:Y240 5.16 1 No Yes 6 8 1 1
R:R:L190 R:R:Y91 5.86 0 No No 6 8 2 1
R:R:Y240 R:R:Y91 8.94 1 Yes No 8 8 1 1
R:R:L186 R:R:V141 10.43 0 No No 6 5 1 2
R:R:F142 R:R:L158 8.53 0 Yes No 4 1 1 2
R:R:E172 R:R:R258 3.49 0 No Yes 6 7 2 1
R:R:A179 R:R:R183 4.15 0 No Yes 4 6 2 1
R:R:N244 R:R:R183 7.23 1 Yes Yes 7 6 2 1
R:R:R183 R:R:R258 19.19 1 Yes Yes 6 7 1 1
R:R:N244 R:R:Y240 11.63 1 Yes Yes 7 8 2 1
R:R:R258 R:R:Y240 8.23 1 Yes Yes 7 8 1 1
R:R:G261 R:R:Y240 4.35 0 No Yes 6 8 2 1
R:R:N244 R:R:R258 7.23 1 Yes Yes 7 7 2 1
R:R:F142 R:R:G139 1.51 0 Yes No 4 4 1 2
R:R:R258 R:R:S243 1.32 1 Yes No 7 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8EIT_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.69
Number of Linked Nodes 250
Number of Links 270
Number of Hubs 30
Number of Links mediated by Hubs 118
Number of Communities 9
Number of Nodes involved in Communities 46
Number of Links involved in Communities 59
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 59352
Length Of Smallest Path 3
Average Path Length 14.5582
Length of Longest Path 28
Minimum Path Strength 1.435
Average Path Strength 6.14036
Maximum Path Strength 17.975
Minimum Path Correlation 0.7
Average Path Correlation 0.926938
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 49.4278
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.7115
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • regulation of localization   • regulation of calcium ion transport   • positive regulation of calcium ion transport   • transport   • regulation of transport   • regulation of monoatomic ion transport   • positive regulation of biological process   • establishment of localization   • calcium ion transport   • metal ion transport   • localization   • positive regulation of transport   • positive regulation of monoatomic ion transport   • monoatomic ion transport   • monoatomic cation transport   • regulation of metal ion transport   • response to lipid   • response to fatty acid   • response to chemical   • response to oxygen-containing compound   • multicellular organismal process   • interleukin-1 production   • negative regulation of biological process   • regulation of interleukin-1 beta production   • negative regulation of interleukin-1 beta production   • negative regulation of interleukin-1 production   • regulation of cytokine production   • cytokine production   • negative regulation of cellular process   • regulation of multicellular organismal process   • negative regulation of macromolecule metabolic process   • regulation of biosynthetic process   • regulation of interleukin-1 production   • negative regulation of metabolic process   • negative regulation of cytokine production   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • negative regulation of gene expression   • biosynthetic process   • negative regulation of biosynthetic process   • interleukin-1 beta production   • negative regulation of macromolecule biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • negative regulation of multicellular organismal process   • regulation of metabolic process   • positive regulation of cell communication   • establishment of protein localization   • nitrogen compound transport   • positive regulation of establishment of protein localization   • positive regulation of insulin secretion   • intracellular protein localization   • regulation of peptide hormone secretion   • regulation of hormone levels   • positive regulation of peptide hormone secretion   • establishment of protein localization to extracellular region   • protein secretion   • regulation of protein secretion   • regulation of secretion   • positive regulation of protein localization   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • positive regulation of secretion by cell   • hormone secretion   • protein localization to extracellular region   • positive regulation of protein transport   • peptide secretion   • regulation of secretion by cell   • secretion by cell   • positive regulation of hormone secretion   • positive regulation of secretion   • amide transport   • signal release   • positive regulation of cellular process   • positive regulation of peptide secretion   • regulation of signaling   • secretion   • regulation of peptide transport   • regulation of establishment of protein localization   • export from cell   • cell-cell signaling   • regulation of protein transport   • positive regulation of protein secretion   • peptide transport   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • hormone transport   • regulation of cell communication   • insulin secretion   • positive regulation of signaling   • chemical homeostasis   • homeostatic process   • glucose homeostasis   • carbohydrate homeostasis   • ligand-gated ion channel signaling pathway   • defense response to bacterium   • biological process involved in interspecies interaction between organisms   • response to other organism   • defense response   • response to bacterium   • response to stress   • response to external stimulus   • response to external biotic stimulus   • response to biotic stimulus   • carbohydrate derivative catabolic process   • catabolic process   • peptidoglycan catabolic process   • glycosaminoglycan metabolic process   • carbohydrate derivative metabolic process   • aminoglycan catabolic process   • macromolecule catabolic process   • glycosaminoglycan catabolic process   • aminoglycan metabolic process   • peptidoglycan metabolic process   • symbiont-mediated cytolysis of host cell   • viral life cycle   • disruption of cell in another organism   • cytolysis   • biological process involved in interaction with host   • biological process involved in symbiotic interaction   • viral release from host cell by cytolysis   • exit from host cell   • viral process   • cytolysis in another organism   • viral release from host cell   • disruption of anatomical structure in another organism   • symbiont-mediated killing of host cell   • killing of cells of another organism   • cell killing   • cell wall organization or biogenesis   • cell wall macromolecule catabolic process   • cell wall macromolecule metabolic process   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • host cellular component   • host intracellular part   • host cell cytoplasm   • host cell part   • host intracellular region   • other organism part   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • synapse   • cell junction   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • synaptic signaling   • cellular response to acetylcholine   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHXA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHXA
NameDoconexent
Synonyms4,7,10,13,16,19-docosahexaenoic acid
Identifier
FormulaC22 H32 O2
Molecular Weight328.488
SMILES
PubChem445580
Formal Charge0
Total Atoms56
Total Chiral Atoms0
Total Bonds55
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO14842
Sequence
>8EIT_nogp_Chain_R
LPPQLSFGL YVAAFALGF PLNVLAIRG ATAHARLRL TPSLVYALN 
LGCSDLLLT VSLPLKAVE ALASGAWPL PASLCPVFA VAHFFPLYA 
GGGFLAALS AGRYLGAAF PLGYQAFRR PCYSWGVCA AIWALVLCH 
LGLVFGLEA PGTSLGINT PVSPVCLEA WDPASAGPA RFSLSLLLF 
FLPLAITAF CYVGCLRAL ARSGLTHRR KLRAAWVAG GALLTLLLC 
VGPYNASNV ASFLYPNLG GSWRKLGLI TGAWSVVLN PLVTGYL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5KW2ALipidFree Fatty AcidFFA1Homo sapiens-PubChem 133053953-2.762018-05-02doi.org/10.1038/s41467-017-01240-w
5TZYALipidFree Fatty AcidFFA1Homo sapiens-MK8666; AP8-3.222017-06-07doi.org/10.1038/nsmb.3417
5TZRALipidFree Fatty AcidFFA1Homo sapiens-MK8666-2.22017-06-07doi.org/10.1038/nsmb.3417
4PHUALipidFree Fatty AcidFFA1Homo sapiens-Fasiglifam-2.332014-07-16doi.org/10.1038/nature13494
9K1CALipidFree Fatty AcidFFA1Homo sapiens-DHAGi1/β1/γ23.22024-12-11doi.org/10.1016/j.celrep.2024.115024
9K1C (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiens-DHA3.22024-12-11doi.org/10.1016/j.celrep.2024.115024
8EITALipidFree Fatty AcidFFA1Homo sapiensDoconexent-chim(NtGi1L-Gs-CtGq)/β1/γ22.82023-05-24doi.org/10.1073/pnas.2219569120
8EIT (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensDoconexent-2.82023-05-24doi.org/10.1073/pnas.2219569120
8EJCALipidFree Fatty AcidFFA1Homo sapiensTAK-875-chim(NtGi1L-Gs-CtGq)/β1/γ232023-05-24doi.org/10.1073/pnas.2219569120
8EJC (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensTAK-875-32023-05-24doi.org/10.1073/pnas.2219569120
8EJKALipidFree Fatty AcidFFA1Homo sapiensTAK-875-chim(NtGi1L-Gs-CtGq)/β1/γ23.42023-05-24doi.org/10.1073/pnas.2219569120
8EJK (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensTAK-875-3.42023-05-24doi.org/10.1073/pnas.2219569120
8T3VALipidFree Fatty AcidFFA1Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-chim(NtGi2L-Gs-CtGq)/β1/γ23.392024-01-24doi.org/10.1126/sciadv.adj2384
8T3V (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-3.392024-01-24doi.org/10.1126/sciadv.adj2384




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