Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.2811030
2R:R:L3 8.0525407
3R:R:Y12 5.42509
4R:R:G19 3.1375428
5R:R:I27 2.2775407
6R:R:P40 4.6925417
7R:R:Y44 4.6775407
8R:R:N47 8.55419
9R:R:L55 6.055407
10R:R:F88 5.186505
11R:R:F96 7.27667616
12R:R:Y105 4.62407
13R:R:S123 5.6425418
14R:R:W124 7.5725414
15R:R:W131 7.3475419
16R:R:I160 3.86502
17R:R:W174 10.2075404
18R:R:F184 9.995404
19R:R:L190 5.44406
20R:R:F191 8.56559
21R:R:C201 3.4025407
22R:R:Y202 6.62408
23R:R:L233 4.44409
24R:R:Y250 2.9825402
25R:R:L253 3.3925403
26R:R:L262 4.2325445
27R:R:P273 5.3375429
28R:R:V275 3.275407
29R:R:Y278 6.9625407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:V141 99.91664.22YesNo005
2R:R:L186 R:R:V141 1004.47NoNo065
3R:R:L186 R:R:Y91 48.25248.21NoNo068
4R:R:L190 R:R:Y91 47.99149.38YesNo068
5R:R:L190 R:R:V134 95.29674.47YesNo067
6R:R:F88 R:R:V134 94.47873.93YesNo057
7R:R:F88 R:R:P89 45.53755.78YesNo058
8R:R:L55 R:R:P89 43.32579.85YesNo078
9R:R:L55 R:R:V269 39.96777.45YesNo077
10R:R:D52 R:R:V269 38.837610.22NoNo097
11R:R:D52 R:R:P273 23.11859.66NoYes299
12R:R:L22 R:R:P273 20.09964.93NoYes279
13R:R:L22 R:R:V270 15.08414.47NoNo276
14R:R:V270 R:R:W267 13.93782.45NoNo064
15R:R:L11 R:R:W267 11.43556.83NoNo054
16R:R:L11 R:R:L7 10.2652.77NoNo057
17R:R:H137 R:R:L186 51.84727.71NoNo056
18R:R:H137 R:R:L190 49.75925.14NoYes056
19L:L:?1 R:R:F87 42.91414.67YesNo006
20R:R:F87 R:R:Y240 20.39026.19NoNo068
21R:R:L262 R:R:Y240 19.91664.69YesNo458
22L:L:?1 R:R:R183 56.68517.74YesNo006
23R:R:R183 R:R:R258 26.581515.99NoNo067
24R:R:L262 R:R:R258 25.83344.86YesNo457
25R:R:F87 R:R:H86 21.993810.18NoNo066
26R:R:H86 R:R:L262 20.47633.86NoYes065
27R:R:L262 R:R:Y12 63.40373.52YesYes059
28R:R:D52 R:R:N23 14.580914.81NoNo299
29R:R:L53 R:R:N23 13.951313.73NoNo079
30R:R:F88 R:R:W131 56.40257.02YesYes059
31R:R:N47 R:R:W131 41.34549.04YesYes199
32R:R:N47 R:R:W124 40.16956.78YesYes194
33R:R:S123 R:R:W124 31.97633.71YesYes184
34R:R:P40 R:R:S123 22.11765.34YesYes178
35R:R:P40 R:R:T39 17.57033.5YesNo077
36R:R:F96 R:R:W131 12.961112.03YesYes169
37R:R:K62 R:R:Y12 56.103911.94NoYes079
38R:R:F82 R:R:K62 45.06663.72NoNo057
39R:R:C170 R:R:F82 41.42344.19NoNo095
40R:R:C170 R:R:W72 22.13643.92NoNo099
41R:R:P73 R:R:W72 10.14134.05NoNo049
42R:R:L74 R:R:W72 10.141315.94NoNo079
43R:R:C170 R:R:C79 18.00353.64NoNo099
44R:R:C79 R:R:I160 16.0073.27NoYes092
45R:R:N244 R:R:R183 42.300613.26NoNo076
46R:R:N244 R:R:S187 41.75168.94NoNo075
47R:R:N241 R:R:S187 41.197410.43NoNo095
48R:R:F191 R:R:N241 31.333222.96YesNo599
49R:R:F191 R:R:L233 20.61893.65YesYes099
50R:R:L233 R:R:T198 17.65914.42YesNo098
51R:R:S101 R:R:T198 12.42847.99NoNo098
52R:R:C201 R:R:S101 11.63733.44YesNo079
53R:R:F191 R:R:G238 13.2144.52YesNo094
54R:R:S268 R:R:V237 10.0393.23NoNo098
55R:R:G238 R:R:P239 12.42844.06NoNo049
56R:R:P239 R:R:T264 11.637310.49NoNo095
57R:R:G261 R:R:T264 10.84085.46NoNo065
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:P80 5.82 3 Yes No 0 7 0 1
L:L:?1 R:R:V84 7.39 3 Yes No 0 6 0 1
L:L:?1 R:R:F87 14.67 3 Yes No 0 6 0 1
L:L:?1 R:R:L138 16.67 3 Yes No 0 6 0 1
L:L:?1 R:R:V141 4.22 3 Yes No 0 5 0 1
L:L:?1 R:R:F142 23.29 3 Yes No 0 4 0 1
L:L:?1 R:R:L158 6.86 3 Yes No 0 1 0 1
L:L:?1 R:R:L171 3.92 3 Yes No 0 5 0 1
L:L:?1 R:R:R183 7.74 3 Yes No 0 6 0 1
R:R:L158 R:R:P80 4.93 3 No No 1 7 1 1
R:R:F87 R:R:H86 10.18 0 No No 6 6 1 2
R:R:F87 R:R:Y240 6.19 0 No No 6 8 1 2
R:R:L186 R:R:V141 4.47 0 No No 6 5 2 1
R:R:E145 R:R:F142 7 0 No No 4 4 2 1
R:R:E145 R:R:W174 17.45 0 No Yes 4 4 2 2
R:R:L171 R:R:W174 6.83 0 No Yes 5 4 1 2
R:R:N244 R:R:R183 13.26 0 No No 7 6 2 1
R:R:R183 R:R:R258 15.99 0 No No 6 7 1 2
R:R:R258 R:R:Y240 7.2 4 No No 7 8 2 2
L:L:?1 R:R:A83 2.23 3 Yes No 0 6 0 1
R:R:G139 R:R:L138 1.71 0 No No 4 6 2 1
R:R:A182 R:R:V141 1.7 0 No No 4 5 2 1
R:R:A146 R:R:L158 1.58 0 No No 3 1 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8EJC_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.5
Number of Linked Nodes 252
Number of Links 257
Number of Hubs 29
Number of Links mediated by Hubs 116
Number of Communities 5
Number of Nodes involved in Communities 24
Number of Links involved in Communities 27
Path Summary
Number Of Nodes in MetaPath 58
Number Of Links MetaPath 57
Number of Shortest Paths 51165
Length Of Smallest Path 3
Average Path Length 18.3228
Length of Longest Path 35
Minimum Path Strength 1.165
Average Path Strength 6.67696
Maximum Path Strength 19.98
Minimum Path Correlation 0.7
Average Path Correlation 0.924081
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.125
Average % Of Corr. Nodes 39.7626
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.6832
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code2YB
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code2YB
NameFasiglifam
SynonymsFasiglifam
Identifier
FormulaC29 H32 O7 S
Molecular Weight524.625
SMILES
PubChem24857286
Formal Charge0
Total Atoms69
Total Chiral Atoms1
Total Bonds72
Total Aromatic Bonds18

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO14842
Sequence
>8EJC_nogp_Chain_R
DLPPQLSFG LYVAAFALG FPLNVLAIR GATAHARLR LTPSLVYAL 
NLGCSDLLL TVSLPLKAV EALASGAWP LPASLCPVF AVAHFFPLY 
AGGGFLAAL SAGRYLGAA FPLGYQAFR RPCYSWGVC AAIWALVLC 
HLGLVFGLE APGTSLGIN TPVNGSPVC LEAWDPASA GPARFSLSL 
LLFFLPLAI TAFCYVGCL RALARSGLT HRRKLRAAW VAGGALLTL 
LLCVGPYNA SNVASFLYP NLGGSWRKL GLITGAWSV VLNPLVTGY 
L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5KW2ALipidFree Fatty AcidFFA1Homo sapiens-PubChem 133053953-2.762018-05-02doi.org/10.1038/s41467-017-01240-w
5TZYALipidFree Fatty AcidFFA1Homo sapiens-MK8666; AP8-3.222017-06-07doi.org/10.1038/nsmb.3417
5TZRALipidFree Fatty AcidFFA1Homo sapiens-MK8666-2.22017-06-07doi.org/10.1038/nsmb.3417
4PHUALipidFree Fatty AcidFFA1Homo sapiens-Fasiglifam-2.332014-07-16doi.org/10.1038/nature13494
9K1CALipidFree Fatty AcidFFA1Homo sapiens-DHAGi1/β1/γ23.22024-12-11doi.org/10.1016/j.celrep.2024.115024
9K1C (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiens-DHA3.22024-12-11doi.org/10.1016/j.celrep.2024.115024
8EITALipidFree Fatty AcidFFA1Homo sapiensDoconexent-chim(NtGi1L-Gs-CtGq)/β1/γ22.82023-05-24doi.org/10.1073/pnas.2219569120
8EIT (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensDoconexent-2.82023-05-24doi.org/10.1073/pnas.2219569120
8EJCALipidFree Fatty AcidFFA1Homo sapiensTAK-875-chim(NtGi1L-Gs-CtGq)/β1/γ232023-05-24doi.org/10.1073/pnas.2219569120
8EJC (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensTAK-875-32023-05-24doi.org/10.1073/pnas.2219569120
8EJKALipidFree Fatty AcidFFA1Homo sapiensTAK-875-chim(NtGi1L-Gs-CtGq)/β1/γ23.42023-05-24doi.org/10.1073/pnas.2219569120
8EJK (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensTAK-875-3.42023-05-24doi.org/10.1073/pnas.2219569120
8T3VALipidFree Fatty AcidFFA1Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-chim(NtGi2L-Gs-CtGq)/β1/γ23.392024-01-24doi.org/10.1126/sciadv.adj2384
8T3V (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-3.392024-01-24doi.org/10.1126/sciadv.adj2384




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8EJC_nogp.zip



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