Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.4141010
2R:R:Y12 4.54167609
3R:R:N23 7.155429
4R:R:L42 4.464547
5R:R:Y44 5.5825407
6R:R:N47 8.718539
7R:R:D52 6.24529
8R:R:L55 5.955407
9R:R:K62 6.9075417
10R:R:W72 6.51459
11R:R:C79 7.26459
12R:R:H86 4.972516
13R:R:F87 8.56416
14R:R:F88 5.844505
15R:R:Y91 6.335618
16R:R:F96 6.925436
17R:R:Y105 4.64567
18R:R:F110 4.34466
19R:R:S123 4.27408
20R:R:F142 5.95614
21R:R:I160 5.208552
22R:R:N161 5.016503
23R:R:W174 6.46514
24R:R:D175 3.3975406
25R:R:R183 9.876516
26R:R:F191 8.82519
27R:R:Y202 5.115408
28R:R:Y240 6.70167618
29R:R:N241 8.6275419
30R:R:N244 5.264517
31R:R:L253 3.995403
32R:R:R258 6.735417
33R:R:V269 4.61167627
34R:R:L271 3.415406
35R:R:N272 7.666529
36R:R:P273 4.13429
37R:R:Y278 5.5975407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F87 21.558320.35YesYes106
2R:R:F87 R:R:H86 33.33563.39YesYes166
3R:R:H86 R:R:K62 32.38085.24YesYes167
4R:R:K62 R:R:Y12 28.74229.55YesYes079
5R:R:A66 R:R:Y12 19.37512.67NoYes069
6R:R:A66 R:R:S8 17.05171.71NoNo063
7R:R:L3 R:R:S8 14.65484.5NoNo073
8R:R:A63 R:R:Y12 12.24464NoYes079
9R:R:H86 R:R:L55 30.83193.86YesYes067
10R:R:L55 R:R:V269 60.22835.96YesYes077
11R:R:L59 R:R:V269 22.80014.47NoYes097
12R:R:L59 R:R:Y12 20.79053.52NoYes099
13R:R:D52 R:R:V269 45.13955.84YesYes297
14L:L:?1 R:R:L135 39.3119.46YesNo003
15R:R:F88 R:R:L135 39.19084.87YesNo053
16R:R:F88 R:R:W131 1005.01YesNo059
17R:R:N47 R:R:W131 98.91179.04YesNo099
18R:R:N47 R:R:V43 79.9844.43YesNo397
19R:R:S123 R:R:V43 79.68359.7YesNo087
20R:R:P40 R:R:S123 44.33841.78NoYes078
21R:R:P40 R:R:T39 21.64513.5NoNo077
22R:R:L42 R:R:T39 14.86185.9YesNo077
23R:R:H33 R:R:L42 10.74913.86NoYes047
24R:R:P120 R:R:S123 24.28231.78NoYes048
25R:R:L38 R:R:P120 17.38553.28NoNo054
26R:R:L38 R:R:L42 14.04732.77NoYes457
27R:R:P40 R:R:Y114 23.54795.56NoNo076
28R:R:L42 R:R:Y278 14.30778.21YesYes077
29R:R:S123 R:R:Y44 15.03543.82YesYes087
30R:R:F96 R:R:N47 18.887712.08YesYes369
31R:R:D52 R:R:N272 36.84075.39YesYes299
32L:L:?1 R:R:N244 27.31343.13YesYes107
33R:R:N241 R:R:N244 38.73015.45YesYes197
34R:R:F191 R:R:N241 40.23918.12YesYes199
35R:R:F191 R:R:V237 25.97815.24YesNo198
36R:R:S268 R:R:V237 26.3923.23NoNo098
37R:R:N272 R:R:S268 10.76915.96YesNo099
38R:R:F88 R:R:P89 52.63055.78YesNo058
39R:R:F87 R:R:Y240 11.13635.16YesYes168
40R:R:N244 R:R:Y240 10.92275.81YesYes178
41R:R:E65 R:R:K62 13.39975.4NoYes077
42L:L:?1 R:R:F142 31.813313.87YesYes104
43R:R:F142 R:R:G159 29.64354.52YesNo044
44R:R:G159 R:R:I160 23.24743.53NoYes042
45R:R:I160 R:R:W72 15.06214.7YesYes529
46R:R:L74 R:R:W72 12.05112.53NoYes079
47R:R:F88 R:R:V134 16.92485.24YesNo057
48R:R:L190 R:R:Y91 17.15854.69NoYes068
49R:R:F96 R:R:I130 15.26918.79YesNo066
50R:R:G95 R:R:I130 13.40633.53NoNo056
51R:R:N272 R:R:T232 25.103514.62YesNo296
52R:R:C236 R:R:S268 21.43145.16NoNo089
53R:R:C236 R:R:L271 17.20526.35NoYes086
54R:R:L271 R:R:V275 37.9492.98YesNo067
55R:R:G228 R:R:V275 34.91795.52NoNo057
56R:R:G227 R:R:G228 31.83342.11NoNo045
57R:R:G227 R:R:Y202 30.27117.24NoYes048
58R:R:L106 R:R:Y114 20.15622.34NoNo076
59R:R:F110 R:R:L106 16.5912.44YesNo067
60R:R:F110 R:R:Y105 11.1035.16YesYes667
61L:L:?1 R:R:R183 17.759419.37YesYes106
62R:R:R183 R:R:W174 33.11524YesYes164
63R:R:D175 R:R:W174 21.15774.47YesYes064
64R:R:D175 R:R:S178 14.94864.42YesNo061
65R:R:E145 R:R:S178 12.85228.62NoNo041
66R:R:P147 R:R:W174 15.669612.16NoYes034
67R:R:N161 R:R:P147 14.13418.15YesNo033
68R:R:N241 R:R:S187 20.08957.45YesNo095
69R:R:S187 R:R:V245 17.69931.62NoNo055
70R:R:F184 R:R:V245 14.78173.93NoNo045
71R:R:F191 R:R:G238 13.47983.01YesNo094
72R:R:L206 R:R:Y202 22.2465.86NoYes058
73R:R:K219 R:R:L206 19.0885.64NoNo065
74R:R:K219 R:R:R218 15.73646.19NoNo065
75R:R:L214 R:R:R218 14.04063.64NoNo035
76R:R:G238 R:R:P239 10.80924.06NoNo049
77R:R:L55 R:R:P89 52.59059.85YesNo078
78R:R:Y240 R:R:Y91 10.22839.93YesYes188
79R:R:L190 R:R:V134 16.01688.94NoNo067
80R:R:N241 R:R:Y91 18.34023.49YesYes198
81R:R:L271 R:R:T232 23.8352.95YesNo066
82R:R:N244 R:R:R183 14.78848.44YesYes176
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:A83 3.59 1 Yes No 0 6 0 1
L:L:?1 R:R:V84 20.36 1 Yes No 0 6 0 1
L:L:?1 R:R:F87 20.35 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L135 9.46 1 Yes No 0 3 0 1
L:L:?1 R:R:L138 10.51 1 Yes No 0 6 0 1
L:L:?1 R:R:G139 5.2 1 Yes No 0 4 0 1
L:L:?1 R:R:F142 13.87 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R183 19.37 1 Yes Yes 0 6 0 1
L:L:?1 R:R:N244 3.13 1 Yes Yes 0 7 0 1
L:L:?1 R:R:R258 8.3 1 Yes Yes 0 7 0 1
R:R:A83 R:R:F142 4.16 1 No Yes 6 4 1 1
R:R:F87 R:R:H86 3.39 1 Yes Yes 6 6 1 2
R:R:F87 R:R:Y240 5.16 1 Yes Yes 6 8 1 2
R:R:F87 R:R:R258 5.34 1 Yes Yes 6 7 1 1
R:R:F88 R:R:L135 4.87 0 Yes No 5 3 2 1
R:R:L138 R:R:Y91 5.86 0 No Yes 6 8 1 2
R:R:Y240 R:R:Y91 9.93 1 Yes Yes 8 8 2 2
R:R:N241 R:R:Y91 3.49 1 Yes Yes 9 8 2 2
R:R:N244 R:R:Y91 3.49 1 Yes Yes 7 8 1 2
R:R:A146 R:R:F142 5.55 0 No Yes 3 4 2 1
R:R:F142 R:R:G159 4.52 1 Yes No 4 4 1 2
R:R:F142 R:R:L171 6.09 1 Yes No 4 5 1 2
R:R:A146 R:R:W174 3.89 0 No Yes 3 4 2 2
R:R:A179 R:R:W174 7.78 1 No Yes 4 4 2 2
R:R:R183 R:R:W174 4 1 Yes Yes 6 4 1 2
R:R:A179 R:R:R183 6.91 1 No Yes 4 6 2 1
R:R:N244 R:R:R183 8.44 1 Yes Yes 7 6 1 1
R:R:R183 R:R:R258 10.66 1 Yes Yes 6 7 1 1
R:R:N244 R:R:Y240 5.81 1 Yes Yes 7 8 1 2
R:R:N241 R:R:N244 5.45 1 Yes Yes 9 7 2 1
R:R:R258 R:R:S243 2.64 1 Yes No 7 5 1 2
R:R:F142 R:R:G143 1.51 1 Yes No 4 3 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8T3V_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.92
Number of Linked Nodes 260
Number of Links 283
Number of Hubs 37
Number of Links mediated by Hubs 142
Number of Communities 6
Number of Nodes involved in Communities 40
Number of Links involved in Communities 53
Path Summary
Number Of Nodes in MetaPath 83
Number Of Links MetaPath 82
Number of Shortest Paths 37523
Length Of Smallest Path 3
Average Path Length 12.1636
Length of Longest Path 31
Minimum Path Strength 1.295
Average Path Strength 6.04283
Maximum Path Strength 20.355
Minimum Path Correlation 0.7
Average Path Correlation 0.924766
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 57.1325
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.1792
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHXA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHXA
NameDoconexent
Synonyms4,7,10,13,16,19-docosahexaenoic acid
Identifier
FormulaC22 H32 O2
Molecular Weight328.488
SMILES
PubChem445580
Formal Charge0
Total Atoms56
Total Chiral Atoms0
Total Bonds55
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO14842
Sequence
>8T3V_nogp_Chain_R
MDLPPQLSF GLYVAAFAL GFPLNVLAI RGATAHARL RLTPSLVYA 
LNLGCSDLL LTVSLPLKA VEALASGAW PLPASLCPV FAVAHFFPL 
YAGGGFLAA LSAGRYLGA AFPLGYQAF RRPCYSWGV CAAIWALVL 
CHLGLVFGL EAPGGWLDH SNTSLGINT PVNVCLEAW DPASAGPAR 
FSLSLLLFF LPLAITAFC YVGCLRALA RSGLTHRRK LRAAWVAGG 
ALLTLLLCV GPYNASNVA SFLYPNLGG SWRKLGLIT GAWSVVLNP 
LVTGYL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5KW2ALipidFree Fatty AcidFFA1Homo sapiens-PubChem 133053953-2.762018-05-02doi.org/10.1038/s41467-017-01240-w
5TZYALipidFree Fatty AcidFFA1Homo sapiens-MK8666; AP8-3.222017-06-07doi.org/10.1038/nsmb.3417
5TZRALipidFree Fatty AcidFFA1Homo sapiens-MK8666-2.22017-06-07doi.org/10.1038/nsmb.3417
4PHUALipidFree Fatty AcidFFA1Homo sapiens-Fasiglifam-2.332014-07-16doi.org/10.1038/nature13494
9K1CALipidFree Fatty AcidFFA1Homo sapiens-DHAGi1/β1/γ23.22024-12-11doi.org/10.1016/j.celrep.2024.115024
9K1C (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiens-DHA3.22024-12-11doi.org/10.1016/j.celrep.2024.115024
8EITALipidFree Fatty AcidFFA1Homo sapiensDoconexent-chim(NtGi1L-Gs-CtGq)/β1/γ22.82023-05-24doi.org/10.1073/pnas.2219569120
8EIT (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensDoconexent-2.82023-05-24doi.org/10.1073/pnas.2219569120
8EJCALipidFree Fatty AcidFFA1Homo sapiensTAK-875-chim(NtGi1L-Gs-CtGq)/β1/γ232023-05-24doi.org/10.1073/pnas.2219569120
8EJC (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensTAK-875-32023-05-24doi.org/10.1073/pnas.2219569120
8EJKALipidFree Fatty AcidFFA1Homo sapiensTAK-875-chim(NtGi1L-Gs-CtGq)/β1/γ23.42023-05-24doi.org/10.1073/pnas.2219569120
8EJK (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensTAK-875-3.42023-05-24doi.org/10.1073/pnas.2219569120
8T3VALipidFree Fatty AcidFFA1Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-chim(NtGi2L-Gs-CtGq)/β1/γ23.392024-01-24doi.org/10.1126/sciadv.adj2384
8T3V (No Gprot) ALipidFree Fatty AcidFFA1Homo sapiensDocosa-4,7,10,13,16,19-Hexaenoic acid-3.392024-01-24doi.org/10.1126/sciadv.adj2384




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Download 8T3V_nogp.zip



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