Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.56751210
2R:R:N35 7.9025439
3R:R:I39 2.9425438
4R:R:L42 3.242508
5R:R:D65 4.4175409
6R:R:T69 3.184508
7R:R:V72 4.2575457
8R:R:Q89 4.645402
9R:R:L100 4.3075407
10R:R:F102 6.82407
11R:R:S114 4.6975409
12R:R:Y118 6.252578
13R:R:L163 5.22404
14R:R:Q164 15.635417
15R:R:P166 6.8575416
16R:R:T168 9.0175416
17R:R:W169 17.7525415
18R:R:W174 7.77415
19R:R:Y186 5405
20R:R:A189 2.3775407
21R:R:I196 2.2575467
22R:R:T199 3.1825408
23R:R:N203 6.1425409
24R:R:P310 4.04404
25R:R:D311 5.2475416
26R:R:R316 6.074517
27R:R:P322 5.8325409
28R:R:I328 4.9325488
29R:R:Y329 4.2675409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:T69 1005.67YesYes008
2R:R:D65 R:R:T69 48.9242.89YesYes098
3R:R:D65 R:R:P322 48.32483.22YesYes099
4R:R:N321 R:R:P322 96.33496.52NoYes099
5R:R:D325 R:R:N321 93.19924.04NoNo099
6R:R:D325 R:R:I110 92.45022.8NoNo098
7R:R:I110 R:R:Y329 43.14682.42NoYes089
8R:R:V58 R:R:Y329 32.79575.05NoYes089
9R:R:L42 R:R:V58 28.66632.98YesNo088
10R:R:I330 R:R:L42 14.01114.28NoYes088
11R:R:F102 R:R:T69 56.82332.59YesYes078
12R:R:F102 R:R:P322 52.229511.56YesYes079
13R:R:I330 R:R:V41 12.47827.68NoNo087
14R:R:F102 R:R:T64 16.77242.59YesNo079
15L:L:?1 R:R:T168 34.75819.93YesYes106
16R:R:Q164 R:R:T168 12.083711.34YesYes176
17R:R:L163 R:R:Q164 23.52321.33YesYes047
18R:R:L163 R:R:Q89 11.81416.65YesYes042
19L:L:?1 R:R:W169 41.219423.02YesYes105
20R:R:Q164 R:R:W169 13.30237.24YesYes175
21L:L:?1 R:R:L99 20.57226.66YesNo008
22R:R:F171 R:R:L99 19.20913.65NoNo068
23R:R:F171 R:R:L100 15.25446.09NoYes067
24R:R:F191 R:R:L104 11.8344.87NoNo068
25R:R:I110 R:R:T199 56.49374.56NoYes088
26R:R:C111 R:R:T199 13.73153.38NoYes078
27R:R:F191 R:R:L195 11.55442.44NoNo068
28R:R:S114 R:R:T199 52.14963.2YesYes098
29R:R:N203 R:R:S114 21.87555.96YesYes099
30R:R:R117 R:R:S114 27.32817.91NoYes099
31R:R:L274 R:R:N203 22.44978.24NoYes089
32R:R:L274 R:R:R117 19.57862.43NoNo089
33R:R:L274 R:R:V206 38.85751.49NoNo089
34R:R:V206 R:R:Y118 36.15122.52NoYes098
35R:R:N122 R:R:Y118 11.279817.44NoYes778
36R:R:L119 R:R:Y118 16.89222.34NoYes068
37R:R:F126 R:R:L119 14.1012.44NoNo056
38R:R:F126 R:R:Y130 11.29978.25NoNo055
39R:R:P166 R:R:T168 21.79568.74YesYes166
40R:R:P166 R:R:Y165 17.53132.78YesNo063
41R:R:L302 R:R:Y165 14.59538.21NoNo013
42R:R:L302 R:R:P300 13.93623.28NoNo011
43R:R:W169 R:R:W174 29.44524.69YesYes155
44R:R:V292 R:R:W174 18.80966.13NoYes075
45R:R:A189 R:R:V292 17.29661.7YesNo077
46R:R:I328 R:R:Y329 12.43822.42YesYes089
47R:R:L100 R:R:Y188 11.77914.69YesNo077
48R:R:L288 R:R:Y188 10.57572.34NoNo077
49R:R:C111 R:R:L195 11.30474.76NoNo078
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:I23 5.49 1 Yes No 0 6 0 1
L:L:?1 R:R:P24 15.8 1 Yes No 0 7 0 1
L:L:?1 R:R:M27 10.88 1 Yes No 0 8 0 1
L:L:?1 R:R:T69 5.67 1 Yes Yes 0 8 0 1
L:L:?1 R:R:S73 4.34 1 Yes No 0 8 0 1
L:L:?1 R:R:T79 8.51 1 Yes No 0 7 0 1
L:L:?1 R:R:L99 6.66 1 Yes No 0 8 0 1
L:L:?1 R:R:T168 9.93 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W169 23.02 1 Yes Yes 0 5 0 1
L:L:?1 R:R:I315 6.87 1 Yes No 0 6 0 1
L:L:?1 R:R:S319 2.89 1 Yes No 0 8 0 1
L:L:?1 R:R:I323 2.75 1 Yes No 0 8 0 1
R:R:I23 R:R:P24 3.39 1 No No 6 7 1 1
R:R:I23 R:R:R316 6.26 1 No Yes 6 7 1 2
R:R:M27 R:R:V26 6.09 1 No No 8 5 1 2
R:R:R316 R:R:V26 5.23 1 Yes No 7 5 2 2
R:R:M27 R:R:R316 11.17 1 No Yes 8 7 1 2
R:R:F28 R:R:S73 5.28 0 No No 6 8 2 1
R:R:D65 R:R:T69 2.89 0 Yes Yes 9 8 2 1
R:R:L70 R:R:T69 2.95 0 No Yes 5 8 2 1
R:R:F102 R:R:T69 2.59 0 Yes Yes 7 8 2 1
R:R:P74 R:R:S73 5.34 0 No No 9 8 2 1
R:R:F171 R:R:L99 3.65 0 No No 6 8 2 1
R:R:P166 R:R:Q164 12.63 1 Yes Yes 6 7 2 2
R:R:Q164 R:R:T168 11.34 1 Yes Yes 7 6 2 1
R:R:Q164 R:R:W169 37.24 1 Yes Yes 7 5 2 1
R:R:P166 R:R:T168 8.74 1 Yes Yes 6 6 2 1
R:R:T168 R:R:W169 6.06 1 Yes Yes 6 5 1 1
R:R:W169 R:R:W174 4.69 1 Yes Yes 5 5 1 2
R:R:I315 R:R:S319 7.74 1 No No 6 8 1 1
R:R:R316 R:R:V320 6.54 1 Yes No 7 5 2 2
R:R:I323 R:R:V320 4.61 1 No No 8 5 1 2
R:R:L324 R:R:V320 4.47 1 No No 7 5 2 2
R:R:I323 R:R:L324 7.14 1 No No 8 7 1 2
R:R:G31 R:R:T69 1.82 0 No Yes 8 8 2 1
R:R:S103 R:R:S319 1.63 0 No No 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8GCM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.42
Number of Linked Nodes 230
Number of Links 253
Number of Hubs 29
Number of Links mediated by Hubs 106
Number of Communities 8
Number of Nodes involved in Communities 40
Number of Links involved in Communities 50
Path Summary
Number Of Nodes in MetaPath 50
Number Of Links MetaPath 49
Number of Shortest Paths 35106
Length Of Smallest Path 3
Average Path Length 12.8395
Length of Longest Path 28
Minimum Path Strength 1.435
Average Path Strength 5.40627
Maximum Path Strength 30.13
Minimum Path Correlation 0.7
Average Path Correlation 0.917793
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 47.0948
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.7621
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle
Gene OntologyCellular Component• midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell periphery   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation   • prostaglandin E receptor activity   • prostanoid receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • icosanoid receptor activity   • prostaglandin receptor activity   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • cellular developmental process   • cell development   • mononuclear cell differentiation   • lymphocyte activation   • lymphocyte differentiation   • cell activation involved in immune response   • CD4-positive, alpha-beta T cell differentiation   • CD4-positive, alpha-beta T cell differentiation involved in immune response   • alpha-beta T cell differentiation involved in immune response   • leukocyte activation   • alpha-beta T cell differentiation   • T cell activation involved in immune response   • alpha-beta T cell activation involved in immune response   • T cell activation   • cell differentiation   • CD4-positive, alpha-beta T cell activation   • leukocyte activation involved in immune response   • alpha-beta T cell activation   • T cell differentiation   • lymphocyte activation involved in immune response   • T-helper cell differentiation   • immune response   • hemopoiesis   • cell activation   • T cell differentiation involved in immune response   • immune effector process   • immune system process   • leukocyte differentiation   • regulation of defense response   • regulation of response to external stimulus   • defense response   • positive regulation of biological process   • response to external stimulus   • regulation of inflammatory response   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • positive regulation of inflammatory response   • regulation of response to stimulus   • regulation of response to stress   • response to stress   • positive regulation of defense response   • inflammatory response   • regulation of cytoskeleton organization   • regulation of cellular component organization   • regulation of actin filament-based process   • regulation of actin filament bundle assembly   • cellular component biogenesis   • cellular component organization   • cellular component assembly   • actin filament bundle organization   • actin filament-based process   • cellular component organization or biogenesis   • stress fiber assembly   • regulation of actin filament organization   • actin cytoskeleton organization   • actomyosin structure organization   • actin filament organization   • regulation of cellular component biogenesis   • regulation of organelle organization   • regulation of stress fiber assembly   • organelle organization   • contractile actin filament bundle assembly   • regulation of actomyosin structure organization   • regulation of actin cytoskeleton organization   • actin filament bundle assembly   • regulation of supramolecular fiber organization   • supramolecular fiber organization   • cytoskeleton organization   • MAPK cascade   • ERK1 and ERK2 cascade   • skeletal system development   • bone development   • negative regulation of inflammatory response   • negative regulation of response to stimulus   • negative regulation of biological process   • negative regulation of response to external stimulus   • negative regulation of defense response   • ossification   • regulation of multicellular organismal process   • regulation of ossification   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to external biotic stimulus   • response to nematode   • response to biotic stimulus   • negative regulation of cellular process   • cytokine production   • regulation of cytokine production   • negative regulation of macromolecule metabolic process   • regulation of biosynthetic process   • negative regulation of metabolic process   • negative regulation of cytokine production   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • negative regulation of gene expression   • biosynthetic process   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • negative regulation of multicellular organismal process   • regulation of metabolic process   • response to mechanical stimulus   • response to abiotic stimulus   • negative regulation of locomotion   • regulation of cell motility   • negative regulation of eosinophil migration   • eosinophil migration   • eosinophil extravasation   • negative regulation of cellular extravasation   • cellular extravasation   • myeloid leukocyte migration   • regulation of cell migration   • cell migration   • regulation of immune system process   • cell motility   • negative regulation of eosinophil extravasation   • negative regulation of cell migration   • locomotion   • regulation of leukocyte migration   • regulation of eosinophil extravasation   • granulocyte migration   • regulation of eosinophil migration   • leukocyte migration   • negative regulation of leukocyte migration   • negative regulation of immune system process   • regulation of locomotion   • negative regulation of cell motility   • regulation of cellular extravasation   • cellular response to mechanical stimulus   • cellular response to abiotic stimulus   • cellular response to external stimulus   • cellular response to environmental stimulus   • JNK cascade   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • positive regulation of macromolecule biosynthetic process   • positive regulation of metabolic process   • positive regulation of biosynthetic process   • positive regulation of macromolecule metabolic process   • positive regulation of cellular process   • positive regulation of gene expression   • positive regulation of multicellular organismal process   • positive regulation of cytokine production   • negative regulation of cellular component organization   • protein-containing complex organization   • negative regulation of protein-containing complex assembly   • negative regulation of integrin activation   • regulation of protein-containing complex assembly   • protein-containing complex assembly   • regulation of integrin activation   • integrin activation   • response to lipopolysaccharide   • response to bacterium   • response to molecule of bacterial origin
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeYX9
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeYX9
Name(5S)-5-[(3R)-4,4-difluoro-3-hydroxy-4-phenylbutyl]-1-[6-(1H-tetrazol-5-yl)hexyl]pyrrolidin-2-one
Synonyms
Identifier
FormulaC21 H29 F2 N5 O2
Molecular Weight421.484
SMILES
PubChem25014543
Formal Charge0
Total Atoms59
Total Chiral Atoms2
Total Bonds61
Total Aromatic Bonds11

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35408
Sequence
>8GCM_nogp_Chain_R
IPAVMFIFG VVGNLVAIV VLCKSRKEQ KETTFYTLV CGLAVTDLL 
GTLLVSPVT IATYMQPLC EYSTFILLF FSLSGLSII CAMSVERYL 
AINHAYFYS HYVDKRLAG LTLFAVYAS NVLFCALPN MRLQYPDTW 
CFIDWTTNV AYSYMYAGF SSFLILATV LCNVLVCGA LLRMHRQFM 
RGAEIQMVI LLIATSLVV LICSIPLVV RVFVNQLYQ PSLEREVSK 
NPDLQAIRI ASVNPILDP WIYILLRKT VL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8GCPALipidProstanoidEP4Homo sapiensPGE2-Gi1/β1/γ23.12024-01-0310.1073/pnas.2216329120
8GCP (No Gprot) ALipidProstanoidEP4Homo sapiensPGE2-3.12024-01-0310.1073/pnas.2216329120
8GCMALipidProstanoidEP4Homo sapiensL902688-Gi1/β1/γ23.52024-01-0310.1073/pnas.2216329120
8GCM (No Gprot) ALipidProstanoidEP4Homo sapiensL902688-3.52024-01-0310.1073/pnas.2216329120
8GDBALipidProstanoidEP4Homo sapiensPGE2-Gs/β1/γ23.12024-01-0310.1073/pnas.2216329120
8GDB (No Gprot) ALipidProstanoidEP4Homo sapiensPGE2-3.12024-01-0310.1073/pnas.2216329120
8GDAALipidProstanoidEP4Homo sapiensL902688-Gs/β1/γ23.32024-01-0310.1073/pnas.2216329120
8GDA (No Gprot) ALipidProstanoidEP4Homo sapiensL902688-3.32024-01-0310.1073/pnas.2216329120
8GD9ALipidProstanoidEP4Homo sapiensRivenprost-Gs/β1/γ23.22024-01-0310.1073/pnas.2216329120
8GD9 (No Gprot) ALipidProstanoidEP4Homo sapiensRivenprost-3.22024-01-0310.1073/pnas.2216329120
7D7MALipidProstanoidEP4Homo sapiensDinoprostone-Gs/β1/γ13.32020-11-1810.1016/j.str.2020.11.007
7D7M (No Gprot) ALipidProstanoidEP4Homo sapiensDinoprostone-3.32020-11-1810.1016/j.str.2020.11.007
5YWYALipidProstanoidEP4Homo sapiensONO-AE3-208--3.22018-12-0510.1038/s41589-018-0131-3
5YHLALipidProstanoidEP4Homo sapiensPubChem 135121352--4.22018-12-0510.1038/s41589-018-0131-3




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8GCM_nogp.zip



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