Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 5.771610
2R:R:M27 4.135418
3R:R:Y55 4.065458
4R:R:S73 5.265408
5R:R:Y80 7.65416
6R:R:W85 4.4826
7R:R:I98 5.965405
8R:R:F102 8.285407
9R:R:M113 4.73409
10R:R:R117 4.0175439
11R:R:Y118 7.8325478
12R:R:Y127 6.4475408
13R:R:L140 3.5175408
14R:R:P154 4.5075469
15R:R:Q164 5.49517
16R:R:T168 8.2875416
17R:R:W169 7.715415
18R:R:F171 4.78406
19R:R:D173 7.41515
20R:R:W174 6.38515
21R:R:H181 8.7975405
22R:R:Y184 7.4625468
23R:R:L195 4.2875408
24R:R:N203 6.5475439
25R:R:E267 4.094508
26R:R:L274 4.88438
27R:R:R291 8.3416
28R:R:N295 9.03416
29R:R:N309 5.295412
30R:R:D311 7.3625416
31R:R:R316 8.34417
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:P322 1003.68YesNo009
2R:R:D65 R:R:P322 23.88034.83NoNo099
3R:R:D65 R:R:P326 14.98566.44NoNo499
4R:R:A38 R:R:P326 13.82511.87NoNo099
5R:R:A38 R:R:I330 12.33853.25NoNo098
6R:R:I330 R:R:L331 10.83932.85NoNo086
7R:R:N321 R:R:P322 98.71416.52NoNo099
8R:R:D325 R:R:N321 98.31268.08NoNo099
9R:R:D325 R:R:L61 52.92315.43NoNo099
10R:R:I109 R:R:L61 38.97885.71NoNo089
11R:R:I109 R:R:T64 37.73053.04NoNo089
12R:R:T64 R:R:Y144 33.89794.99NoNo098
13R:R:L140 R:R:Y144 32.59948.21YesNo088
14R:R:G60 R:R:L140 14.74721.71NoYes088
15R:R:C59 R:R:G60 13.27311.96NoNo068
16R:R:G137 R:R:L140 16.4911.71NoYes058
17R:R:A136 R:R:G137 15.02951.95NoNo085
18R:R:L61 R:R:M113 16.64164.24NoYes099
19L:L:?1 R:R:V72 16.760810.03YesNo007
20R:R:I98 R:R:V72 15.29923.07YesNo057
21R:R:I98 R:R:L71 10.83938.56YesNo056
22L:L:?1 R:R:T168 25.96297.72YesYes106
23R:R:T168 R:R:T79 22.48154.71YesNo067
24R:R:T79 R:R:W85 21.07018.49NoYes076
25L:L:?1 R:R:W169 72.56936.81YesYes105
26R:R:F171 R:R:W169 40.18329.02YesYes065
27R:R:F171 R:R:L100 26.00053.65YesNo067
28R:R:I172 R:R:L100 19.10684.28NoNo077
29R:R:D325 R:R:I110 79.48815.6NoNo098
30R:R:I110 R:R:T199 66.99913.04NoNo088
31R:R:C111 R:R:T199 18.17213.38NoNo078
32R:R:C111 R:R:L195 15.48746.35NoYes078
33R:R:I110 R:R:V281 18.57363.07NoNo088
34R:R:I196 R:R:V281 17.19364.61NoNo078
35R:R:I196 R:R:S285 13.16659.29NoNo078
36R:R:S114 R:R:T199 58.21737.99NoNo098
37R:R:C202 R:R:S114 25.89395.16NoNo079
38R:R:N203 R:R:S114 36.50737.45YesNo099
39R:R:N203 R:R:R117 23.58556.03YesYes399
40R:R:C202 R:R:Y118 23.0215.38NoYes078
41R:R:H123 R:R:Y118 10.97111.98NoYes778
42R:R:Q164 R:R:W169 34.41853.29YesYes175
43R:R:Q164 R:R:W174 17.82097.67YesYes175
44R:R:D173 R:R:W174 26.3583.35YesYes155
45R:R:D173 R:R:S160 13.3865.89YesNo153
46R:R:H181 R:R:S160 10.7648.37YesNo053
47R:R:F171 R:R:W174 20.85694.01YesYes065
48R:R:D311 R:R:Q164 14.38977.83YesYes167
49R:R:S285 R:R:V289 12.72741.62NoNo087
50R:R:M270 R:R:R117 19.60862.48NoYes099
51R:R:E267 R:R:M270 13.95062.71YesNo089
52R:R:D311 R:R:R291 11.22829.53YesYes166
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:P24 4.91 1 Yes No 0 7 0 1
L:L:?1 R:R:M27 4.23 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T69 4.41 1 Yes No 0 8 0 1
L:L:?1 R:R:V72 10.03 1 Yes No 0 7 0 1
L:L:?1 R:R:S73 5.61 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T76 9.92 1 Yes No 0 8 0 1
L:L:?1 R:R:Y80 5.26 1 Yes Yes 0 6 0 1
L:L:?1 R:R:S103 5.61 1 Yes No 0 7 0 1
L:L:?1 R:R:T168 7.72 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W169 6.81 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L312 7.25 1 Yes No 0 6 0 1
L:L:?1 R:R:I315 3.2 1 Yes No 0 6 0 1
L:L:?1 R:R:R316 3.63 1 Yes Yes 0 7 0 1
L:L:?1 R:R:S319 8.98 1 Yes No 0 8 0 1
L:L:?1 R:R:P322 3.68 1 Yes No 0 9 0 1
R:R:V21 R:R:Y80 8.83 0 No Yes 6 6 2 1
R:R:I23 R:R:P24 3.39 0 No No 6 7 2 1
R:R:I23 R:R:R316 15.03 0 No Yes 6 7 2 1
R:R:P24 R:R:T76 3.5 1 No No 7 8 1 1
R:R:M27 R:R:R316 6.2 1 Yes Yes 8 7 1 1
R:R:M27 R:R:S319 3.07 1 Yes No 8 8 1 1
R:R:M27 R:R:V320 3.04 1 Yes No 8 5 1 2
R:R:F28 R:R:S73 10.57 0 No Yes 6 8 2 1
R:R:G31 R:R:I323 3.53 0 No No 8 8 2 1
R:R:D65 R:R:P322 4.83 4 No No 9 9 2 1
R:R:I98 R:R:V72 3.07 0 Yes No 5 7 2 1
R:R:I77 R:R:S73 3.1 0 No Yes 6 8 2 1
R:R:T168 R:R:T79 4.71 1 Yes No 6 7 1 2
R:R:T168 R:R:Y80 13.73 1 Yes Yes 6 6 1 1
R:R:Q164 R:R:W169 3.29 1 Yes Yes 7 5 2 1
R:R:N309 R:R:Q164 5.28 1 Yes Yes 2 7 2 2
R:R:P166 R:R:T168 6.99 0 No Yes 6 6 2 1
R:R:F171 R:R:W169 9.02 0 Yes Yes 6 5 2 1
R:R:I315 R:R:W169 11.74 1 No Yes 6 5 1 1
R:R:L312 R:R:N309 4.12 1 No Yes 6 2 1 2
R:R:L312 R:R:R316 8.5 1 No Yes 6 7 1 1
R:R:N321 R:R:P322 6.52 0 No No 9 9 2 1
R:R:I315 R:R:L288 2.85 1 No No 6 7 1 2
R:R:P20 R:R:Y80 2.78 0 No Yes 5 6 2 1
R:R:P74 R:R:S73 1.78 0 No Yes 9 8 2 1
L:L:?1 R:R:I323 1.07 1 Yes No 0 8 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7D7M_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.04
Number of Linked Nodes 252
Number of Links 268
Number of Hubs 31
Number of Links mediated by Hubs 120
Number of Communities 7
Number of Nodes involved in Communities 43
Number of Links involved in Communities 56
Path Summary
Number Of Nodes in MetaPath 53
Number Of Links MetaPath 52
Number of Shortest Paths 31259
Length Of Smallest Path 3
Average Path Length 12.0296
Length of Longest Path 24
Minimum Path Strength 1.42
Average Path Strength 5.40158
Maximum Path Strength 12.92
Minimum Path Correlation 0.7
Average Path Correlation 0.929365
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 55.2847
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 32.0444
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeP2E
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeP2E
NameDinoprostone
SynonymsDinoprostona
Identifier
FormulaC20 H32 O5
Molecular Weight352.465
SMILES
PubChem5280360
Formal Charge0
Total Atoms57
Total Chiral Atoms4
Total Bonds57
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35408
Sequence
>7D7M_nogp_Chain_R
SPVTIPAVM FIFGVVGNL VAIVVLCKS RKEQKETTF YTLVCGLAV 
TDLLGTLLV SPVTIATYM KGQWPGGQP LCEYSTFIL LFFSLSGLS 
IICAMSVER YLAINHAYF YSHYVDKRL AGLTLFAVY ASNVLFCAL 
PNMGLGSSR LQYPDTWCF IDWTTQVTA HAAYSYMYA GFSSFLILA 
TVLCNVLVC GALLRMHRQ FFRRIAGAE IQMVILLIA TSLVVLICS 
IPLVVRVFV NQLYQPSLE REVSKNPDL QAIRIASVN PILDPWIYI 
LLRKTVLSK AIEKIK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7D7MALipidProstanoidEP4Homo sapiensDinoprostone-Gs/β1/γ13.32020-11-18doi.org/10.1016/j.str.2020.11.007
7D7M (No Gprot) ALipidProstanoidEP4Homo sapiensDinoprostone-3.32020-11-18doi.org/10.1016/j.str.2020.11.007
5YHLALipidProstanoidEP4Homo sapiensPubChem 135121352--4.22018-12-05doi.org/10.1038/s41589-018-0131-3
5YWYALipidProstanoidEP4Homo sapiensONO-AE3-208--3.22018-12-05doi.org/10.1038/s41589-018-0131-3
8GCMALipidProstanoidEP4Homo sapiensL902688-Gi1/β1/γ23.52024-01-03doi.org/10.1073/pnas.2216329120
8GCM (No Gprot) ALipidProstanoidEP4Homo sapiensL902688-3.52024-01-03doi.org/10.1073/pnas.2216329120
8GCPALipidProstanoidEP4Homo sapiensPGE2-Gi1/β1/γ23.12024-01-03doi.org/10.1073/pnas.2216329120
8GCP (No Gprot) ALipidProstanoidEP4Homo sapiensPGE2-3.12024-01-03doi.org/10.1073/pnas.2216329120
8GD9ALipidProstanoidEP4Homo sapiensRivenprost-Gs/β1/γ23.22024-01-03doi.org/10.1073/pnas.2216329120
8GD9 (No Gprot) ALipidProstanoidEP4Homo sapiensRivenprost-3.22024-01-03doi.org/10.1073/pnas.2216329120
8GDAALipidProstanoidEP4Homo sapiensL902688-Gs/β1/γ23.32024-01-03doi.org/10.1073/pnas.2216329120
8GDA (No Gprot) ALipidProstanoidEP4Homo sapiensL902688-3.32024-01-03doi.org/10.1073/pnas.2216329120
8GDBALipidProstanoidEP4Homo sapiensPGE2-Gs/β1/γ23.12024-01-03doi.org/10.1073/pnas.2216329120
8GDB (No Gprot) ALipidProstanoidEP4Homo sapiensPGE2-3.12024-01-03doi.org/10.1073/pnas.2216329120




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Download 7D7M_nogp.zip



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