Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 13.0233610
2L:L:?2 9.38571710
3L:L:K3 11.275410
4L:L:?4 8.56444910
5L:L:?6 16.69410
6R:R:Y51 5.88427
7R:R:I66 3.945407
8R:R:V78 7.06416
9R:R:N80 8.58458
10R:R:Y82 8.098517
11R:R:L86 6.3825419
12R:R:D90 7.022519
13R:R:M94 5.5075436
14R:R:L97 6.226506
15R:R:W109 6.44718
16R:R:N126 5.535408
17R:R:Q127 6.73333617
18R:R:F132 5.472565
19R:R:M137 5.6475418
20R:R:R141 7.5175419
21R:R:Y142 6.09678
22R:R:R155 6.09417
23R:R:L176 1.9484
24R:R:M193 7.585404
25R:R:W195 7.95416
26R:R:R203 8.3475414
27R:R:P218 3.7525408
28R:R:L219 5.87405
29R:R:Y226 9.235418
30R:R:Y262 8.9418
31R:R:W270 12.565618
32R:R:F273 8.4875416
33R:R:Y274 8.945418
34R:R:L276 8.04404
35R:R:V281 3.79405
36R:R:L285 6.1775401
37R:R:F291 9.0775404
38R:R:F296 12.27524
39R:R:N305 9.2325419
40R:R:C307 3.4775437
41R:R:N309 7.515419
42R:R:F315 5.0025446
43R:R:F320 8.08558
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:W195 14.990111.97YesYes106
2R:R:M193 R:R:W195 11.00175.82YesYes046
3L:L:?4 R:R:W109 18.91964.67YesYes108
4L:L:?1 L:L:?6 24.515125.64YesYes100
5L:L:?6 L:L:F5 48.794625.68YesNo000
6L:L:F5 R:R:F292 26.34118.22NoNo003
7L:L:F5 R:R:Y295 22.764917.54NoNo004
8R:R:F292 R:R:F296 24.637116.08NoYes034
9R:R:F296 R:R:I47 14.333823.86YesNo046
10R:R:C55 R:R:L97 12.02839.52NoYes066
11R:R:C55 R:R:M94 10.97654.86NoYes066
12L:L:?1 L:L:?2 41.318513.32YesYes100
13L:L:?2 R:R:Q127 92.46926.34YesYes107
14R:R:Q127 R:R:W270 97.892210.95YesYes178
15R:R:N305 R:R:W270 95.266914.69YesYes198
16R:R:N305 R:R:N309 1009.54YesYes199
17R:R:D90 R:R:N309 31.43174.04YesYes199
18R:R:D90 R:R:N62 37.46486.73YesNo099
19R:R:N62 R:R:P310 14.68726.52NoNo099
20R:R:E91 R:R:N62 22.361110.52NoNo079
21R:R:P310 R:R:V65 11.48131.77NoNo099
22R:R:E91 R:R:I66 19.23096.83NoYes077
23R:R:I66 R:R:L70 14.48532.85YesNo074
24R:R:L70 R:R:R71 12.88652.43NoNo045
25R:R:R71 R:R:Y67 11.279416.46NoNo054
26R:R:L134 R:R:N309 74.067112.36NoYes189
27R:R:L134 R:R:Y313 86.64238.21NoNo189
28R:R:M137 R:R:Y313 36.18585.99YesNo189
29R:R:I83 R:R:M137 16.71934.37NoYes088
30R:R:F320 R:R:I83 15.351910.05YesNo088
31R:R:M137 R:R:Y82 26.06344.79YesYes187
32R:R:V78 R:R:Y82 11.165812.62YesYes167
33R:R:L86 R:R:N309 11.77584.12YesYes199
34R:R:C133 R:R:L86 16.73196.35NoYes079
35R:R:C133 R:R:N85 15.4956.3NoNo079
36R:R:N85 R:R:W168 12.99597.91NoNo099
37R:R:F93 R:R:Q127 18.76817.03NoYes077
38R:R:F93 R:R:Y303 10.551614.44NoNo076
39R:R:L97 R:R:Y303 10.13089.38YesNo066
40R:R:T129 R:R:W168 11.733815.77NoNo079
41R:R:R141 R:R:Y313 49.61088.23YesNo199
42R:R:R141 R:R:Y226 46.85519.26YesYes198
43R:R:I222 R:R:Y226 23.43812.42NoYes088
44R:R:I222 R:R:S138 22.12139.29NoNo089
45R:R:C225 R:R:S138 20.7966.89NoNo079
46R:R:C225 R:R:Y142 18.12025.38NoYes078
47L:L:?2 R:R:M193 15.4156.73YesYes004
48R:R:F206 R:R:W195 24.18286.01NoYes056
49R:R:F206 R:R:P177 22.65142.89NoNo057
50R:R:L176 R:R:P177 17.58171.64YesNo047
51R:R:L176 R:R:V180 10.59781.49YesNo844
52L:L:?1 R:R:R203 11.519211.79YesYes104
53R:R:R203 R:R:V281 10.49693.92YesYes045
54R:R:F266 R:R:L219 12.99598.53NoYes095
55R:R:V259 R:R:Y226 25.878211.36NoYes078
56R:R:V230 R:R:V259 23.33291.6NoNo067
57R:R:R234 R:R:V230 22.02037.85NoNo056
58R:R:R234 R:R:R238 19.361410.66NoNo056
59R:R:R238 R:R:R247 14.03099.6NoNo062
60R:R:R247 R:R:R248 11.3726.4NoNo024
61R:R:L285 R:R:Y295 12.34385.86YesNo014
62L:L:?2 L:L:?4 40.5364.51YesYes100
63L:L:?4 L:L:?6 27.32139.37YesYes100
64R:R:D90 R:R:L86 10.39598.14YesYes199
65R:R:L134 R:R:L86 13.39986.92NoYes189
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:H192 6.24 1 Yes No 0 4 0 1
L:L:?1 R:R:W195 11.97 1 Yes Yes 0 6 0 1
L:L:?1 R:R:R203 11.79 1 Yes Yes 0 4 0 1
L:L:?2 R:R:Q127 6.34 1 Yes Yes 0 7 0 1
L:L:?2 R:R:M193 6.73 1 Yes Yes 0 4 0 1
L:L:?2 R:R:T210 4.68 1 Yes No 0 5 0 1
L:L:?2 R:R:F273 7.73 1 Yes Yes 0 6 0 1
L:L:K3 R:R:D123 12.44 1 Yes No 0 6 0 1
L:L:K3 R:R:Q127 4.07 1 Yes Yes 0 7 0 1
L:L:K3 R:R:F273 6.2 1 Yes Yes 0 6 0 1
L:L:?4 R:R:L100 14.76 1 Yes No 0 7 0 1
L:L:?4 R:R:Q103 9.83 1 Yes No 0 5 0 1
L:L:?4 R:R:W109 4.67 1 Yes Yes 0 8 0 1
L:L:?4 R:R:V119 13.44 1 Yes No 0 5 0 1
L:L:?4 R:R:M120 4.64 1 Yes No 0 4 0 1
L:L:?4 R:R:D123 6.68 1 Yes No 0 6 0 1
L:L:F5 R:R:F292 18.22 0 No No 0 3 0 1
L:L:F5 R:R:Y295 17.54 0 No No 0 4 0 1
L:L:?6 R:R:E287 6.07 1 Yes No 0 1 0 1
R:R:F93 R:R:Q127 7.03 0 No Yes 7 7 2 1
R:R:L100 R:R:L97 4.15 0 No Yes 7 6 1 2
R:R:F99 R:R:W109 5.01 0 No Yes 5 8 2 1
R:R:F99 R:R:V119 5.24 0 No No 5 5 2 1
R:R:Q103 R:R:W109 4.38 1 No Yes 5 8 1 1
R:R:F111 R:R:W109 10.02 0 No Yes 6 8 2 1
R:R:C116 R:R:W109 7.84 1 No Yes 9 8 2 1
R:R:C191 R:R:W109 11.75 1 No Yes 9 8 2 1
R:R:C116 R:R:C191 7.28 1 No No 9 9 2 2
R:R:M120 R:R:S182 6.13 0 No No 4 5 1 2
R:R:M120 R:R:M193 8.66 0 No Yes 4 4 1 1
R:R:D123 R:R:G124 5.03 0 No No 6 4 1 2
R:R:I131 R:R:Q127 4.12 1 No Yes 8 7 2 1
R:R:Q127 R:R:W270 10.95 1 Yes Yes 7 8 1 2
R:R:Q127 R:R:Y274 7.89 1 Yes Yes 7 8 1 2
R:R:I131 R:R:W270 9.4 1 No Yes 8 8 2 2
R:R:M193 R:R:V178 9.13 0 Yes No 4 4 1 2
R:R:H192 R:R:T190 15.06 0 No No 4 4 1 2
R:R:M193 R:R:W195 5.82 0 Yes Yes 4 6 1 1
R:R:R203 R:R:W195 8 1 Yes Yes 4 6 1 1
R:R:F206 R:R:W195 6.01 0 No Yes 5 6 2 1
R:R:A199 R:R:R203 9.68 0 No Yes 4 4 2 1
R:R:R203 R:R:V281 3.92 1 Yes Yes 4 5 1 2
R:R:W270 R:R:Y274 12.54 1 Yes Yes 8 8 2 2
R:R:P302 R:R:W270 6.76 0 No Yes 7 8 2 2
R:R:F273 R:R:Y274 11.35 1 Yes Yes 6 8 1 2
R:R:F273 R:R:P302 8.67 1 Yes No 6 7 1 2
R:R:L276 R:R:Y295 11.72 0 Yes No 4 4 2 1
R:R:L285 R:R:Y295 5.86 0 Yes No 1 4 2 1
R:R:F292 R:R:F296 16.08 0 No Yes 3 4 1 2
R:R:G187 R:R:H192 1.59 0 No No 4 4 2 1
R:R:G112 R:R:W109 1.41 0 No Yes 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XIR_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.56
Number of Linked Nodes 267
Number of Links 298
Number of Hubs 43
Number of Links mediated by Hubs 160
Number of Communities 8
Number of Nodes involved in Communities 52
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 45836
Length Of Smallest Path 3
Average Path Length 13.3595
Length of Longest Path 32
Minimum Path Strength 1.49
Average Path Strength 8.54124
Maximum Path Strength 25.66
Minimum Path Correlation 0.7
Average Path Correlation 0.928295
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 51.7326
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.5491
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • developmental process   • multicellular organismal process   • head development   • forebrain development   • animal organ development   • brain development   • nervous system development   • multicellular organism development   • central nervous system development   • anatomical structure development   • system development   • spermatogenesis   • sexual reproduction   • reproductive process   • multicellular organismal reproductive process   • developmental process involved in reproduction   • male gamete generation   • gamete generation   • negative regulation of cell population proliferation   • cell population proliferation   • regulation of cell population proliferation   • negative regulation of cellular process   • negative regulation of biological process   • response to lipid   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to chemical   • cellular response to lipid   • response to estradiol   • cellular response to estradiol stimulus   • response to endogenous stimulus   • cell death   • hormone-mediated signaling pathway   • apoptotic signaling pathway   • cellular response to endogenous stimulus   • hormone-mediated apoptotic signaling pathway   • response to hormone   • apoptotic process   • programmed cell death   • cellular response to hormone stimulus   • cell-cell signaling   • cerebellum development   • metencephalon development   • hindbrain development   • response to glucocorticoid   • cellular response to glucocorticoid stimulus   • cellular response to corticosteroid stimulus   • response to corticosteroid   • response to steroid hormone   • cellular response to steroid hormone stimulus   • response to nutrient levels   • response to stress   • response to starvation   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • membrane-bounded organelle   • cell projection   • cellular anatomical structure   • organelle   • cilium   • plasma membrane bounded cell projection   • cell periphery   • plasma membrane   • membrane   • non-motile cilium   • ciliary membrane   • bounding membrane of organelle   • plasma membrane region   • organelle membrane
Gene OntologyCellular Component• membrane-bounded organelle   • cell projection   • cellular anatomical structure   • organelle   • cilium   • plasma membrane bounded cell projection   • cell periphery   • plasma membrane   • membrane   • non-motile cilium   • ciliary membrane   • bounding membrane of organelle   • plasma membrane region   • organelle membrane   • cell projection membrane   • neuron projection   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • 9+0 non-motile cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • lysosomal membrane   • lysosome   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code004
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code004
Name(2S)-amino(phenyl)ethanoic acid
SynonymsL-Phenylglycine
Identifier
FormulaC8 H9 N O2
Molecular Weight151.163
SMILES
PubChem6931074
Formal Charge0
Total Atoms20
Total Chiral Atoms1
Total Bonds20
Total Aromatic Bonds6

CodeDTR
PDB ResiduesL:L:?2
Environment DetailsOpen EMBL-EBI Page
CodeDTR
NameD-Tryptophan
Synonyms
  • (2R)-2-amino-3-(1H-indol-3-yl)propanoic acid
  • DTR
  • D-Tryptophan
  • (R)-tryptophan
Identifier
FormulaC11 H12 N2 O2
Molecular Weight204.225
SMILES
PubChem6923517
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds10

CodeTY5
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeTY5
NameO-benzyl-L-tyrosine
Synonyms
Identifier
FormulaC16 H17 N O3
Molecular Weight271.311
SMILES
PubChem725701
Formal Charge0
Total Atoms37
Total Chiral Atoms1
Total Bonds38
Total Aromatic Bonds12

CodeA1D
PDB ResiduesL:L:?6
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP32745
Sequence
>8XIR_nogp_Chain_R
LAVSGVLIP LVYLVVCVV GLLGNSLVI YVVLRHTAS PSVTNVYIL 
NLALADELF MLGLPFLAA QNALSYWPF GSLMCRLVM AVDGINQFT 
SIFCLTVMS VDRYLAVVH PTRSARWRT APVARTVSA AVWVASAVV 
VLPVVVFSG VPRGMSTCH MQWPEPAAA WRAGFIIYT AALGFFGPL 
LVICLCYLL IVVKVRSAG RRVWAPSCQ RRRRSERRV TRMVVAVAL 
FVLCWMPFY VLNIVNVVC PLPEEPAFF GLYFLVVAL PYANSCANP 
ILYGFLSYR FKQGFRRVL Y


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XIRAPeptideSomatostatinSST3Homo sapiensPasireotide-chim(NtGi1-Gs-CtGi1)/β1/γ22.522024-07-03doi.org/10.1073/pnas.2400298121
8XIR (No Gprot) APeptideSomatostatinSST3Homo sapiensPasireotide-2.522024-07-03doi.org/10.1073/pnas.2400298121
8XIQAPeptideSomatostatinSST3Homo sapiensL796778-chim(NtGi1-Gs-CtGi1)/β1/γ22.712024-07-03doi.org/10.1073/pnas.2400298121
8XIQ (No Gprot) APeptideSomatostatinSST3Homo sapiensL796778-2.712024-07-03doi.org/10.1073/pnas.2400298121




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Download 8XIR_nogp.zip



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