Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.1241510
2R:R:E21 5.738522
3R:R:F63 5.7875418
4R:R:F66 4.718507
5R:R:L67 4.65667618
6R:R:L70 5.385419
7R:R:D74 6.016519
8R:R:W95 6.092536
9R:R:F114 6.32417
10R:R:F115 7.2475407
11R:R:S118 3.8525417
12R:R:P119 4.8775418
13R:R:M126 5.62419
14R:R:Y131 7.13507
15R:R:R140 6.71408
16R:R:W157 5.802517
17R:R:L163 3.21406
18R:R:Y178 7.596523
19R:R:S181 3.855418
20R:R:W182 8.608517
21R:R:C183 4.79439
22R:R:L185 6.8405
23R:R:F196 5.11833607
24R:R:S207 2.7675407
25R:R:L214 4.3325407
26R:R:Y226 6.926506
27R:R:R237 7.505405
28R:R:L247 5.4725408
29R:R:W258 9.36667618
30R:R:F264 7.5375404
31R:R:T268 4.2325406
32R:R:S277 2.06402
33R:R:R284 6.6725421
34R:R:R295 9.1275408
35R:R:N300 7.248519
36R:R:Q301 8.374519
37R:R:D304 8.075419
38R:R:Y308 6.965619
39R:R:I309 5.195419
40R:R:L310 7.34418
41R:R:R312 8.13409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:W182 56.087814.68YesYes107
2R:R:F184 R:R:W182 40.49617.02NoYes087
3R:R:F184 R:R:L185 39.486914.61NoYes085
4R:R:F196 R:R:L185 25.55076.09YesYes075
5R:R:F196 R:R:P167 13.04413YesNo079
6R:R:P167 R:R:Y174 10.466519.47NoNo096
7L:L:?1 R:R:T81 20.32046.65YesNo007
8R:R:M108 R:R:T81 19.06744.52NoNo067
9R:R:C183 R:R:M108 14.19593.24YesNo096
10L:L:?1 R:R:S181 41.05524.84YesYes108
11R:R:P179 R:R:S181 34.70673.56NoYes088
12R:R:P179 R:R:Y178 32.29579.74NoYes083
13R:R:E287 R:R:Y178 20.30067.86NoYes233
14R:R:E287 R:R:L282 19.20025.3NoNo034
15L:L:?1 R:R:H89 11.95956.63YesNo107
16R:R:H89 R:R:P28 11.48364.58NoNo076
17L:L:?1 R:R:R295 11.38853.91YesYes008
18L:L:?1 R:R:W258 32.18278.07YesYes108
19R:R:N300 R:R:W258 27.670210.17YesYes198
20R:R:D304 R:R:N300 50.405512.12YesYes199
21R:R:D304 R:R:Y308 73.49378.05YesYes199
22R:R:L67 R:R:Y308 41.67383.52YesYes189
23R:R:I309 R:R:L67 16.56138.56YesYes198
24R:R:I309 R:R:L310 10.58754.28YesYes198
25L:L:?1 R:R:Q301 1007.72YesYes109
26R:R:N300 R:R:Q301 24.45439.24YesYes199
27R:R:D74 R:R:Q301 47.395810.44YesYes199
28R:R:D304 R:R:D74 23.85353.99YesYes199
29R:R:D74 R:R:L70 23.82775.43YesYes199
30R:R:L70 R:R:Y308 47.88754.69YesYes199
31R:R:P119 R:R:Q301 30.437.9YesYes189
32R:R:L70 R:R:P119 24.54943.28YesYes198
33R:R:M126 R:R:Y308 25.005510.78YesYes199
34R:R:F66 R:R:M126 16.61883.73YesYes079
35R:R:F66 R:R:S62 11.44995.28YesNo076
36R:R:F63 R:R:L67 12.85766.09YesYes188
37R:R:F63 R:R:M126 14.61633.73YesYes189
38R:R:F63 R:R:R130 22.158310.69YesNo089
39R:R:Q246 R:R:R130 17.138215.19NoNo089
40R:R:I250 R:R:Y308 55.929213.3NoYes089
41R:R:I250 R:R:N215 48.75194.25NoNo089
42R:R:L247 R:R:N215 34.27845.49YesNo089
43R:R:L282 R:R:M276 15.4418.48NoNo041
44R:R:Q177 R:R:W182 14.63817.67NoYes077
45R:R:L290 R:R:Q177 13.3813.99NoNo067
46R:R:F264 R:R:L290 12.26486.09YesNo046
47R:R:M251 R:R:N215 14.36254.21NoNo089
48R:R:F212 R:R:M251 11.19818.71NoNo058
49R:R:L247 R:R:M243 34.52627.07YesNo088
50R:R:L222 R:R:M243 33.19982.83NoNo088
51R:R:L222 R:R:M244 30.52724.24NoNo086
52R:R:M244 R:R:Y226 27.50762.39NoYes066
53R:R:R237 R:R:Y226 15.383521.61YesYes056
54R:R:Q246 R:R:R312 14.30324.53NoYes089
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:A31 7.11 1 Yes No 0 7 0 1
L:L:?1 R:R:L78 4.46 1 Yes No 0 8 0 1
L:L:?1 R:R:T81 6.65 1 Yes No 0 7 0 1
L:L:?1 R:R:V85 11.52 1 Yes No 0 8 0 1
L:L:?1 R:R:H89 6.63 1 Yes No 0 7 0 1
L:L:?1 R:R:M112 9.11 1 Yes No 0 8 0 1
L:L:?1 R:R:G116 4.41 1 Yes No 0 7 0 1
L:L:?1 R:R:S181 4.84 1 Yes Yes 0 8 0 1
L:L:?1 R:R:W182 14.68 1 Yes Yes 0 7 0 1
L:L:?1 R:R:W258 8.07 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L294 8.03 1 Yes No 0 7 0 1
L:L:?1 R:R:R295 3.91 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T298 6.65 1 Yes No 0 8 0 1
L:L:?1 R:R:Q301 7.72 1 Yes Yes 0 9 0 1
R:R:H89 R:R:P28 4.58 1 No No 7 6 1 2
R:R:F30 R:R:R295 16.03 0 No Yes 5 8 2 1
R:R:D74 R:R:P119 4.83 1 Yes Yes 9 8 2 2
R:R:D74 R:R:Q301 10.44 1 Yes Yes 9 9 2 1
R:R:M108 R:R:T81 4.52 0 No No 6 7 2 1
R:R:H89 R:R:S181 5.58 1 No Yes 7 8 1 1
R:R:P119 R:R:Q301 7.9 1 Yes Yes 8 9 2 1
R:R:L120 R:R:W258 21.64 0 No Yes 8 8 2 1
R:R:Q177 R:R:W182 7.67 0 No Yes 7 7 2 1
R:R:P179 R:R:S181 3.56 0 No Yes 8 8 2 1
R:R:F184 R:R:W182 7.02 0 No Yes 8 7 2 1
R:R:L291 R:R:W182 3.42 0 No Yes 7 7 2 1
R:R:L294 R:R:W182 10.25 1 No Yes 7 7 1 1
R:R:L262 R:R:W258 4.56 0 No Yes 8 8 2 1
R:R:A297 R:R:W258 5.19 0 No Yes 8 8 2 1
R:R:N300 R:R:W258 10.17 1 Yes Yes 9 8 2 1
R:R:Q301 R:R:W258 6.57 1 Yes Yes 9 8 1 1
R:R:L291 R:R:R295 13.36 0 No Yes 7 8 2 1
R:R:N300 R:R:Q301 9.24 1 Yes Yes 9 9 2 1
R:R:F34 R:R:R295 3.21 0 No Yes 8 8 2 1
L:L:?1 R:R:C35 3.07 1 Yes No 0 6 0 1
R:R:L39 R:R:L78 2.77 0 No No 6 8 2 1
R:R:C35 R:R:G82 1.96 0 No No 6 8 1 2
R:R:Q88 R:R:S181 1.44 0 No Yes 6 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XJN_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.24
Number of Linked Nodes 278
Number of Links 301
Number of Hubs 41
Number of Links mediated by Hubs 155
Number of Communities 4
Number of Nodes involved in Communities 39
Number of Links involved in Communities 58
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 87523
Length Of Smallest Path 3
Average Path Length 13.2969
Length of Longest Path 27
Minimum Path Strength 1.485
Average Path Strength 7.07035
Maximum Path Strength 19.85
Minimum Path Correlation 0.7
Average Path Correlation 0.918469
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 47.8736
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 54.0534
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• response to stimulus   • response to chemical   • response to xenobiotic stimulus   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • regulation of tube diameter   • multicellular organismal process   • regulation of biological process   • system process   • regulation of tube size   • regulation of system process   • positive regulation of biological process   • positive regulation of vasoconstriction   • circulatory system process   • regulation of blood circulation   • vascular process in circulatory system   • regulation of vasoconstriction   • positive regulation of multicellular organismal process   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • vasoconstriction   • blood circulation   • regulation of anatomical structure size   • response to ketone   • response to lipid   • response to oxygen-containing compound   • response to testosterone   • regulation of blood pressure   • positive regulation of blood pressure   • smooth muscle contraction   • muscle contraction   • muscle system process   • cellular response to stimulus   • biological process involved in interspecies interaction between organisms   • response to other organism   • cellular response to lipopolysaccharide   • response to external stimulus   • cellular response to molecule of bacterial origin   • response to lipopolysaccharide   • cellular response to oxygen-containing compound   • response to biotic stimulus   • cellular response to biotic stimulus   • cellular response to chemical stimulus   • response to bacterium   • cellular response to lipid   • cellular process   • response to external biotic stimulus   • response to molecule of bacterial origin   • response to alcohol   • response to ethanol   • regulation of cellular process   • signaling   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • regulation of developmental process   • angiogenesis   • regulation of vasculature development   • positive regulation of developmental process   • multicellular organism development   • tube morphogenesis   • anatomical structure development   • regulation of anatomical structure morphogenesis   • blood vessel development   • system development   • developmental process   • regulation of multicellular organismal development   • blood vessel morphogenesis   • tube development   • positive regulation of angiogenesis   • vasculature development   • circulatory system development   • anatomical structure morphogenesis   • positive regulation of vasculature development   • regulation of angiogenesis   • anatomical structure formation involved in morphogenesis   • negative regulation of locomotion   • regulation of cell motility   • cell migration involved in sprouting angiogenesis   • regulation of blood vessel endothelial cell migration   • endothelial cell migration   • negative regulation of biological process   • negative regulation of endothelial cell migration   • negative regulation of blood vessel endothelial cell migration   • regulation of cell migration   • negative regulation of cellular process   • regulation of endothelial cell migration   • blood vessel endothelial cell migration   • cell migration   • cell motility   • locomotion   • negative regulation of cell migration   • regulation of cell migration involved in sprouting angiogenesis   • sprouting angiogenesis   • regulation of locomotion   • negative regulation of cell motility   • negative regulation of cell migration involved in sprouting angiogenesis   • positive regulation of smooth muscle contraction   • regulation of muscle system process   • regulation of muscle contraction   • regulation of smooth muscle contraction   • positive regulation of muscle contraction   • regulation of body fluid levels   • positive regulation of coagulation   • regulation of response to external stimulus   • positive regulation of blood coagulation   • regulation of response to wounding   • regulation of coagulation   • positive regulation of response to stimulus   • response to stress   • regulation of response to stress   • coagulation   • positive regulation of hemostasis   • response to wounding   • regulation of hemostasis   • positive regulation of response to wounding   • wound healing   • regulation of blood coagulation   • hemostasis   • blood coagulation   • positive regulation of wound healing   • regulation of response to stimulus   • regulation of wound healing   • defense response   • inflammatory response   • response to nutrient levels   • response to nutrient   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • cellular anatomical structure   • nucleoplasm   • organelle lumen
Gene OntologyCellular Component• membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • cellular anatomical structure   • nucleoplasm   • organelle lumen   • organelle   • membraneless organelle   • supramolecular complex   • nuclear ribonucleoprotein granule   • nuclear lumen   • cell periphery   • plasma membrane   • membrane   • acrosomal vesicle   • intracellular vesicle   • endomembrane system   • cytoplasmic vesicle   • secretory granule   • secretory vesicle   • cytoplasm   • vesicle   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • extracellular membrane-bounded organelle   • synapse   • cell junction   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21731
Sequence
>8XJN_nogp_Chain_R
CFRPTNITL EERRLIASP WFAASFCVV GLASNLLAL SVLAGARQG 
GSHTRSSFL TFLCGLVLT DFLGLLVTG TIVVSQHAA LFEWHAVDP 
GCRLCRFMG VVMIFFGLS PLLLGAAMA SERYLGITR PFSRPAVAS 
QRRAWATVG LVWAAALAL GLLPLLGVG RYTVQYPGS WCFLTLGAE 
SGDVAFGLL FSMLGGLSV GLSFLLNTV SVATLCHVY HGQEAAQQR 
PRDSEVEMM AQLLGIMVV ASVCWLPLL VFIAQTVLR NPPAMSPAG 
QLSRTTEKE LLIYLRVAT WNQILDPWV YILFRRAVL RRLQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6IIUALipidProstanoidTXA2Homo sapiensRamatroban--2.52018-12-19doi.org/10.1038/s41589-018-0170-9
6IIVALipidProstanoidTXA2Homo sapiensDaltroban--32018-12-19doi.org/10.1038/s41589-018-0170-9
8XJNALipidProstanoidTXA2Homo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ23.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJN (No Gprot) ALipidProstanoidTXA2Homo sapiensCloprosetnol-3.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJOALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi1-Gs-CtGq)/β1/γ23.112024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJO (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.112024-02-28doi.org/10.1016/j.celrep.2024.113893
9GG5ALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi2L-Gs-CtGq)/β1/γ23.262025-08-27To be published
9GG5 (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.262025-08-27To be published
9GGGALipidProstanoidTXA2Homo sapiensI-BOP-chim(NtGi2L-Gs-CtGq)/β1/γ23.252025-08-27To be published
9GGG (No Gprot) ALipidProstanoidTXA2Homo sapiensI-BOP-3.252025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XJN_nogp.zip



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