Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.8661010
2R:R:R13 6.025414
3R:R:S61 3.34407
4R:R:F66 5.978507
5R:R:D74 6.67419
6R:R:D99 4.75405
7R:R:I113 4.2775407
8R:R:F114 7.11457
9R:R:F115 6.566507
10R:R:R130 5.716519
11R:R:Y131 7.74407
12R:R:R136 2.875405
13R:R:V153 4.2025407
14R:R:W157 6.9525457
15R:R:V171 3.4175404
16R:R:Y174 8.5406
17R:R:Y178 9.828523
18R:R:S181 4.58408
19R:R:W182 7.742517
20R:R:F184 6.435408
21R:R:F196 5.1975467
22R:R:L214 2.9725407
23R:R:N215 4.698519
24R:R:I250 7.165418
25R:R:M251 5.1475418
26R:R:W258 5.88625818
27R:R:F264 7.5375404
28R:R:E287 8.7275423
29R:R:Q301 6.98519
30R:R:Y308 9.448519
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:M112 37.23114.99YesNo008
2R:R:F184 R:R:M112 36.68516.22YesNo088
3R:R:F184 R:R:I113 60.97083.77YesYes087
4R:R:I113 R:R:Y174 42.00896.04YesYes076
5R:R:G109 R:R:Y174 32.225110.14NoYes086
6R:R:G109 R:R:M108 30.74481.75NoNo086
7R:R:C105 R:R:M108 21.74873.24NoNo096
8R:R:C105 R:R:W95 18.70655.22NoNo096
9R:R:L104 R:R:W95 14.10266.83NoNo066
10R:R:D99 R:R:L104 12.5576.79YesNo056
11L:L:?1 R:R:W182 58.01838.04YesYes107
12R:R:F184 R:R:W182 41.36256.01YesYes087
13R:R:Q177 R:R:W182 14.18419.86NoYes177
14R:R:Q177 R:R:R13 13.95325.84NoYes174
15L:L:?1 R:R:V85 25.09789.46YesNo008
16R:R:S181 R:R:V85 24.31824.85YesNo088
17R:R:P179 R:R:S181 45.3393.56NoYes088
18R:R:P179 R:R:Y178 39.98812.52NoYes083
19L:L:?1 R:R:H89 27.80317.26YesNo007
20R:R:H89 R:R:S181 24.53825.58NoYes078
21R:R:E21 R:R:Y178 27.50986.73NoYes023
22R:R:E21 R:R:I25 23.99235.47NoNo023
23R:R:I25 R:R:L291 20.3392.85NoNo037
24R:R:L291 R:R:R295 18.619617.01NoNo078
25R:R:F30 R:R:R295 16.791612.83NoNo058
26R:R:F30 R:R:F34 14.94736.43NoNo058
27R:R:F34 R:R:W299 11.242414.03NoNo084
28L:L:?1 R:R:Q301 95.18428.45YesYes109
29R:R:D74 R:R:Q301 1007.83YesYes199
30R:R:D74 R:R:N42 14.25745.39YesNo099
31R:R:D304 R:R:D74 73.63925.32NoYes199
32R:R:D304 R:R:Y308 84.34389.2NoYes199
33R:R:R130 R:R:Y308 42.62289.26YesYes199
34R:R:D74 R:R:L70 23.34318.14YesNo199
35R:R:L122 R:R:L70 33.6248.3NoNo079
36R:R:F66 R:R:L122 32.75483.65YesNo077
37R:R:F66 R:R:V153 28.35453.93YesYes077
38R:R:V153 R:R:W157 19.09227.36YesYes077
39R:R:F200 R:R:I113 18.73913.77NoYes087
40R:R:F200 R:R:L117 12.57887.31NoNo087
41R:R:L117 R:R:L163 11.02515.54NoNo076
42R:R:N215 R:R:R130 34.55024.82YesYes199
43R:R:A127 R:R:N215 55.0444.69NoYes099
44R:R:I250 R:R:Y308 36.500414.51YesYes189
45R:R:I250 R:R:N215 33.87114.25YesYes189
46R:R:A127 R:R:L214 50.41563.15NoYes097
47R:R:L214 R:R:Y131 45.73835.86YesYes077
48R:R:T135 R:R:Y131 16.818816.23NoYes077
49R:R:S218 R:R:Y131 26.62433.82NoYes097
50R:R:R136 R:R:T135 13.54033.88YesNo057
51R:R:I134 R:R:S218 24.98373.1NoNo089
52R:R:I134 R:R:L222 21.74874.28NoNo088
53R:R:F184 R:R:L185 16.10989.74YesNo085
54R:R:F196 R:R:L185 14.65126.09YesNo075
55R:R:F196 R:R:G172 10.18854.52YesNo678
56R:R:L290 R:R:W182 10.80785.69NoYes167
57R:R:F264 R:R:L290 10.62316.09YesNo046
58R:R:M251 R:R:N215 13.57835.61YesYes189
59R:R:L222 R:R:M244 20.14.24NoNo086
60R:R:C223 R:R:M244 18.50554.86NoNo046
61R:R:C223 R:R:H227 16.84592.95NoNo045
62R:R:H227 R:R:Y226 15.17827.62NoNo056
63R:R:R237 R:R:Y226 13.499615.43NoNo056
64R:R:E240 R:R:R237 10.21025.82NoNo085
65R:R:D304 R:R:L70 11.14199.5NoNo199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:A31 4.45 1 Yes No 0 7 0 1
L:L:?1 R:R:L78 3.91 1 Yes No 0 8 0 1
L:L:?1 R:R:T81 10.4 1 Yes No 0 7 0 1
L:L:?1 R:R:V85 9.46 1 Yes No 0 8 0 1
L:L:?1 R:R:H89 7.26 1 Yes No 0 7 0 1
L:L:?1 R:R:M112 4.99 1 Yes No 0 8 0 1
L:L:?1 R:R:W182 8.04 1 Yes Yes 0 7 0 1
L:L:?1 R:R:W258 4.02 1 Yes Yes 0 8 0 1
L:L:?1 R:R:T298 17.68 1 Yes No 0 8 0 1
L:L:?1 R:R:Q301 8.45 1 Yes Yes 0 9 0 1
R:R:H89 R:R:P28 9.15 0 No No 7 6 1 2
R:R:D74 R:R:Q301 7.83 1 Yes Yes 9 9 2 1
R:R:S181 R:R:V85 4.85 0 Yes No 8 8 2 1
R:R:H89 R:R:S181 5.58 0 No Yes 7 8 1 2
R:R:F184 R:R:M112 6.22 0 Yes No 8 8 2 1
R:R:P119 R:R:Q301 6.32 0 No Yes 8 9 2 1
R:R:L120 R:R:W258 13.67 0 No Yes 8 8 2 1
R:R:Q177 R:R:W182 9.86 1 No Yes 7 7 2 1
R:R:L290 R:R:Q177 3.99 1 No No 6 7 2 2
R:R:F184 R:R:W182 6.01 0 Yes Yes 8 7 2 1
R:R:L290 R:R:W182 5.69 1 No Yes 6 7 2 1
R:R:L294 R:R:W182 9.11 0 No Yes 7 7 2 1
R:R:L261 R:R:W258 4.56 0 No Yes 7 8 2 1
R:R:A297 R:R:W258 5.19 0 No Yes 8 8 2 1
R:R:N300 R:R:W258 9.04 1 No Yes 9 8 2 1
R:R:Q301 R:R:W258 4.38 1 Yes Yes 9 8 1 1
R:R:L261 R:R:L294 5.54 0 No No 7 7 2 2
R:R:N300 R:R:Q301 7.92 1 No Yes 9 9 2 1
R:R:L262 R:R:W258 3.42 0 No Yes 8 8 2 1
R:R:G116 R:R:W258 2.81 0 No Yes 7 8 2 1
R:R:A31 R:R:V86 1.7 0 No No 7 7 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9GG5_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.56
Number of Linked Nodes 272
Number of Links 285
Number of Hubs 30
Number of Links mediated by Hubs 118
Number of Communities 6
Number of Nodes involved in Communities 37
Number of Links involved in Communities 46
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 64443
Length Of Smallest Path 3
Average Path Length 15.0454
Length of Longest Path 37
Minimum Path Strength 1.305
Average Path Strength 6.42366
Maximum Path Strength 14.92
Minimum Path Correlation 0.7
Average Path Correlation 0.936719
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 53.576
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.9991
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePUC
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePUC
Name(5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid
Synonyms15-Hydroxy-11 alpha,9 alpha-(epoxymethano)prosta-5,13-dienoic Acid
Identifier
FormulaC21 H34 O4
Molecular Weight350.492
SMILES
PubChem5311493
Formal Charge0
Total Atoms59
Total Chiral Atoms5
Total Bonds60
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21731
Sequence
>9GG5_nogp_Chain_R
PCFRPTNIT LEERRLIAS PWFAASFCV VGLASNLLA LSVLAGARQ 
GGSHTRSSF LTFLCGLVL TDFLGLLVT GTIVVSQHA ALFEWHAVD 
PGCRLCRFM GVVMIFFGL SPLLLGAAM ASERYLGIT RPFSRSQRR 
AWATVGLVW AAALALGLL PLLGVGRYT VQYPGSWCF LTLGAESGD 
VAFGLLFSM LGGLSVGLS FLLNTVSVA TLCHVYHGQ EAAQQRPRD 
SEVEMMAQL LGIMVVASV CWLPLLVFI AQTVLRNPP AMSPAGQLS 
RTTEKELLI YLRVATWNQ ILDPWVYIL FRRAVLRRL QP


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6IIUALipidProstanoidTXA2Homo sapiensRamatroban--2.52018-12-19doi.org/10.1038/s41589-018-0170-9
6IIVALipidProstanoidTXA2Homo sapiensDaltroban--32018-12-19doi.org/10.1038/s41589-018-0170-9
8XJNALipidProstanoidTXA2Homo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ23.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJN (No Gprot) ALipidProstanoidTXA2Homo sapiensCloprosetnol-3.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJOALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi1-Gs-CtGq)/β1/γ23.112024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJO (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.112024-02-28doi.org/10.1016/j.celrep.2024.113893
9GG5ALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi2L-Gs-CtGq)/β1/γ23.262025-08-27To be published
9GG5 (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.262025-08-27To be published
9GGGALipidProstanoidTXA2Homo sapiensI-BOP-chim(NtGi2L-Gs-CtGq)/β1/γ23.252025-08-27To be published
9GGG (No Gprot) ALipidProstanoidTXA2Homo sapiensI-BOP-3.252025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9GG5_nogp.zip



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