Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.469171210
2R:R:F12 13.6875443
3R:R:E21 7.3275452
4R:R:I25 3.73403
5R:R:L49 5.21438
6R:R:H58 6.7475405
7R:R:R60 3.855466
8R:R:F66 4.5775407
9R:R:L70 3.9525419
10R:R:D74 5.152519
11R:R:F75 4.618507
12R:R:H89 8.07407
13R:R:W95 7.572546
14R:R:I113 3.9875407
15R:R:F115 6.47507
16R:R:S118 4.475417
17R:R:M126 4.616509
18R:R:R130 5.25419
19R:R:Y131 5.43667607
20R:R:V153 4.6625407
21R:R:W157 6.366517
22R:R:L163 4.0275426
23R:R:P167 8.535429
24R:R:Y174 7.72526
25R:R:Y178 12.5175453
26R:R:W182 6.48286717
27R:R:F184 6.08408
28R:R:F196 5.98527
29R:R:L214 3.0275407
30R:R:N215 4.26409
31R:R:Y226 14.1354106
32R:R:R237 18.76254105
33R:R:E240 5.73754108
34R:R:I250 4.8325418
35R:R:W258 8.692518
36R:R:F264 5.6525404
37R:R:R284 8.25451
38R:R:R295 10.7775408
39R:R:N300 8.455419
40R:R:Q301 6.97519
41R:R:D304 6.4325419
42R:R:Y308 6.06333619
43R:R:I309 4.412539
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:M112 32.47153.99YesNo008
2R:R:F184 R:R:M112 31.6726.22YesNo088
3R:R:F184 R:R:I113 46.78733.77YesYes087
4R:R:I113 R:R:Y174 27.51873.63YesYes076
5R:R:V110 R:R:Y174 18.51385.05NoYes066
6R:R:L168 R:R:V110 13.00262.98NoNo056
7R:R:L168 R:R:R106 11.15653.64NoNo055
8L:L:?1 R:R:W182 82.62438.84YesYes107
9R:R:F184 R:R:W182 36.67157.02YesYes087
10R:R:M108 R:R:W182 13.81772.33NoYes067
11R:R:M108 R:R:W95 11.96382.33NoYes066
12R:R:P179 R:R:W182 37.54112.7NoYes087
13R:R:P179 R:R:Y178 35.751416.69NoYes083
14R:R:E287 R:R:Y178 16.103511.22NoYes533
15R:R:E287 R:R:L282 15.69892.65NoNo034
16R:R:L282 R:R:M276 10.55342.83NoNo041
17L:L:?1 R:R:H89 12.22064.54YesYes007
18R:R:E21 R:R:Y178 17.8996.73YesYes523
19R:R:E21 R:R:I25 14.53562.73YesYes023
20R:R:I25 R:R:R295 11.5325.01YesYes038
21L:L:?1 R:R:Q301 1008.46YesYes109
22R:R:D74 R:R:Q301 63.738910.44YesYes199
23R:R:D74 R:R:N42 10.75194.04YesNo099
24L:L:?1 R:R:W258 33.29837.24YesYes108
25R:R:N300 R:R:W258 30.897813.56YesYes198
26R:R:D304 R:R:N300 58.266710.77YesYes199
27R:R:D304 R:R:Y308 86.65896.9YesYes199
28R:R:M126 R:R:Y308 38.08778.38YesYes099
29R:R:L67 R:R:M126 28.79294.24NoYes089
30R:R:I309 R:R:L67 14.8745.71YesNo398
31R:R:N300 R:R:Q301 28.42917.92YesYes199
32R:R:D304 R:R:D74 29.46993.99YesYes199
33R:R:D74 R:R:L70 29.81424.07YesYes199
34R:R:L70 R:R:Y308 30.65073.52YesYes199
35R:R:R130 R:R:Y308 11.14484.12YesYes199
36R:R:L49 R:R:L67 12.47744.15YesNo388
37R:R:C68 R:R:L49 13.37617.94NoYes058
38R:R:C68 R:R:L64 11.50283.17NoNo057
39R:R:I250 R:R:Y308 73.15639.67YesYes189
40R:R:I250 R:R:N215 72.76532.83YesYes089
41R:R:A127 R:R:N215 33.04743.13NoYes099
42R:R:A127 R:R:L214 28.43113.15NoYes097
43R:R:L214 R:R:Y131 23.77984.69YesYes077
44R:R:L132 R:R:Y131 11.20513.52NoYes067
45R:R:Q88 R:R:S181 10.0715.78NoNo068
46R:R:F200 R:R:I113 16.68325.02NoYes087
47R:R:F184 R:R:L185 19.78997.31YesNo085
48R:R:F196 R:R:L185 18.01198.53YesNo075
49R:R:F200 R:R:I265 14.84492.51NoNo087
50R:R:L247 R:R:N215 34.32556.87NoYes089
51R:R:L247 R:R:M243 28.17434.24NoNo088
52R:R:L222 R:R:M243 26.70752.83NoNo088
53R:R:E240 R:R:L222 17.42636.63YesNo088
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:A31 6.67 1 Yes No 0 7 0 1
L:L:?1 R:R:L78 6.84 1 Yes No 0 8 0 1
L:L:?1 R:R:T81 11.44 1 Yes No 0 7 0 1
L:L:?1 R:R:V85 10.52 1 Yes No 0 8 0 1
L:L:?1 R:R:H89 4.54 1 Yes Yes 0 7 0 1
L:L:?1 R:R:M112 3.99 1 Yes No 0 8 0 1
L:L:?1 R:R:G116 4.83 1 Yes No 0 7 0 1
L:L:?1 R:R:W182 8.84 1 Yes Yes 0 7 0 1
L:L:?1 R:R:W258 7.24 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L294 5.86 1 Yes No 0 7 0 1
L:L:?1 R:R:T298 10.4 1 Yes No 0 8 0 1
L:L:?1 R:R:Q301 8.46 1 Yes Yes 0 9 0 1
R:R:H89 R:R:R22 4.51 0 Yes No 7 1 1 2
R:R:H89 R:R:P28 10.68 0 Yes No 7 6 1 2
R:R:D74 R:R:P119 3.22 1 Yes No 9 8 2 2
R:R:D74 R:R:Q301 10.44 1 Yes Yes 9 9 2 1
R:R:S181 R:R:V85 4.85 0 No No 8 8 2 1
R:R:H89 R:R:S181 12.55 0 Yes No 7 8 1 2
R:R:F184 R:R:M112 6.22 0 Yes No 8 8 2 1
R:R:P119 R:R:Q301 4.74 1 No Yes 8 9 2 1
R:R:L120 R:R:W258 14.81 0 No Yes 8 8 2 1
R:R:Q177 R:R:W182 14.24 0 No Yes 7 7 2 1
R:R:F184 R:R:W182 7.02 0 Yes Yes 8 7 2 1
R:R:L290 R:R:W182 5.69 0 No Yes 6 7 2 1
R:R:L294 R:R:W182 4.56 1 No Yes 7 7 1 1
R:R:L262 R:R:W258 4.56 0 No Yes 8 8 2 1
R:R:N300 R:R:W258 13.56 1 Yes Yes 9 8 2 1
R:R:Q301 R:R:W258 3.29 1 Yes Yes 9 8 1 1
R:R:N300 R:R:Q301 7.92 1 Yes Yes 9 9 2 1
R:R:P179 R:R:W182 2.7 0 No Yes 8 7 2 1
R:R:M108 R:R:W182 2.33 0 No Yes 6 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9GGG_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.85
Number of Linked Nodes 273
Number of Links 304
Number of Hubs 43
Number of Links mediated by Hubs 157
Number of Communities 10
Number of Nodes involved in Communities 53
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 54
Number Of Links MetaPath 53
Number of Shortest Paths 88274
Length Of Smallest Path 3
Average Path Length 13.8558
Length of Longest Path 28
Minimum Path Strength 1.38
Average Path Strength 6.26052
Maximum Path Strength 30.895
Minimum Path Correlation 0.7
Average Path Correlation 0.926666
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 48.0037
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 59.4149
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• response to stimulus   • response to chemical   • response to xenobiotic stimulus   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • regulation of tube diameter   • multicellular organismal process   • regulation of biological process   • system process   • regulation of tube size   • regulation of system process   • positive regulation of biological process   • positive regulation of vasoconstriction   • circulatory system process   • regulation of blood circulation   • vascular process in circulatory system   • regulation of vasoconstriction   • positive regulation of multicellular organismal process   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • vasoconstriction   • blood circulation   • regulation of anatomical structure size   • response to ketone   • response to lipid   • response to oxygen-containing compound   • response to testosterone   • regulation of blood pressure   • positive regulation of blood pressure   • smooth muscle contraction   • muscle contraction   • muscle system process   • cellular response to stimulus   • biological process involved in interspecies interaction between organisms   • response to other organism   • cellular response to lipopolysaccharide   • response to external stimulus   • cellular response to molecule of bacterial origin   • response to lipopolysaccharide   • cellular response to oxygen-containing compound   • response to biotic stimulus   • cellular response to biotic stimulus   • cellular response to chemical stimulus   • response to bacterium   • cellular response to lipid   • cellular process   • response to external biotic stimulus   • response to molecule of bacterial origin   • response to alcohol   • response to ethanol   • regulation of cellular process   • signaling   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • regulation of developmental process   • angiogenesis   • regulation of vasculature development   • positive regulation of developmental process   • multicellular organism development   • tube morphogenesis   • anatomical structure development   • regulation of anatomical structure morphogenesis   • blood vessel development   • system development   • developmental process   • regulation of multicellular organismal development   • blood vessel morphogenesis   • tube development   • positive regulation of angiogenesis   • vasculature development   • circulatory system development   • anatomical structure morphogenesis   • positive regulation of vasculature development   • regulation of angiogenesis   • anatomical structure formation involved in morphogenesis   • negative regulation of locomotion   • regulation of cell motility   • cell migration involved in sprouting angiogenesis   • regulation of blood vessel endothelial cell migration   • endothelial cell migration   • negative regulation of biological process   • negative regulation of endothelial cell migration   • negative regulation of blood vessel endothelial cell migration   • regulation of cell migration   • negative regulation of cellular process   • regulation of endothelial cell migration   • blood vessel endothelial cell migration   • cell migration   • cell motility   • locomotion   • negative regulation of cell migration   • regulation of cell migration involved in sprouting angiogenesis   • sprouting angiogenesis   • regulation of locomotion   • negative regulation of cell motility   • negative regulation of cell migration involved in sprouting angiogenesis   • positive regulation of smooth muscle contraction   • regulation of muscle system process   • regulation of muscle contraction   • regulation of smooth muscle contraction   • positive regulation of muscle contraction   • regulation of body fluid levels   • positive regulation of coagulation   • regulation of response to external stimulus   • positive regulation of blood coagulation   • regulation of response to wounding   • regulation of coagulation   • positive regulation of response to stimulus   • response to stress   • regulation of response to stress   • coagulation   • positive regulation of hemostasis   • response to wounding   • regulation of hemostasis   • positive regulation of response to wounding   • wound healing   • regulation of blood coagulation   • hemostasis   • blood coagulation   • positive regulation of wound healing   • regulation of response to stimulus   • regulation of wound healing   • defense response   • inflammatory response   • response to nutrient levels   • response to nutrient   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • cellular anatomical structure   • nucleoplasm   • organelle lumen
Gene OntologyCellular Component• membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • cellular anatomical structure   • nucleoplasm   • organelle lumen   • organelle   • membraneless organelle   • supramolecular complex   • nuclear ribonucleoprotein granule   • nuclear lumen   • cell periphery   • plasma membrane   • membrane   • acrosomal vesicle   • intracellular vesicle   • endomembrane system   • cytoplasmic vesicle   • secretory granule   • secretory vesicle   • cytoplasm   • vesicle   • protein-containing complex binding   • binding   • G-protein beta/gamma-subunit complex binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • metal ion binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell communication   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • protein binding   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1I
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1I
NameN-(cyclopent-3-ene-1-carbonyl)-L-histidine
Synonyms
Identifier
FormulaC12 H15 N3 O3
Molecular Weight249.266
SMILES
PubChem64766902
Formal Charge0
Total Atoms33
Total Chiral Atoms1
Total Bonds34
Total Aromatic Bonds5

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21731
Sequence
>9GGG_nogp_Chain_R
PCFRPTNIT LEERRLIAS PWFAASFCV VGLASNLLA LSVLAGARQ 
GGSHTRSSF LTFLCGLVL TDFLGLLVT GTIVVSQHA ALFEWHAVD 
PGCRLCRFM GVVMIFFGL SPLLLGAAM ASERYLGIT RPFSRSQRR 
AWATVGLVW AAALALGLL PLLGVGRYT VQYPGSWCF LTLGAESGD 
VAFGLLFSM LGGLSVGLS FLLNTVSVA TLCHVYHGQ EAAQQRPRD 
SEVEMMAQL LGIMVVASV CWLPLLVFI AQTVLRNPP AMSPAGQLS 
RTTEKELLI YLRVATWNQ ILDPWVYIL FRRAVLRRL QP


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6IIUALipidProstanoidTXA2Homo sapiensRamatroban--2.52018-12-19doi.org/10.1038/s41589-018-0170-9
6IIVALipidProstanoidTXA2Homo sapiensDaltroban--32018-12-19doi.org/10.1038/s41589-018-0170-9
8XJNALipidProstanoidTXA2Homo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ23.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJN (No Gprot) ALipidProstanoidTXA2Homo sapiensCloprosetnol-3.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJOALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi1-Gs-CtGq)/β1/γ23.112024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJO (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.112024-02-28doi.org/10.1016/j.celrep.2024.113893
9GG5ALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi2L-Gs-CtGq)/β1/γ23.262025-08-27To be published
9GG5 (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.262025-08-27To be published
9GGGALipidProstanoidTXA2Homo sapiensI-BOP-chim(NtGi2L-Gs-CtGq)/β1/γ23.252025-08-27To be published
9GGG (No Gprot) ALipidProstanoidTXA2Homo sapiensI-BOP-3.252025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9GGG_nogp.zip



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