Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L49 2.8175418
2R:R:F66 4.956507
3R:R:L67 4.65667618
4R:R:L70 6.28419
5R:R:D74 7.42519
6R:R:F75 5.1675407
7R:R:W95 8.295406
8R:R:D99 3.22405
9R:R:I113 4.605407
10R:R:F114 8.495427
11R:R:M126 6.245419
12R:R:R130 8.615419
13R:R:Y131 6.682507
14R:R:R140 8.505408
15R:R:Y174 10.255406
16R:R:Y178 11.5825403
17R:R:W182 9.1425417
18R:R:F184 6.9875408
19R:R:F196 6.735407
20R:R:L214 3.8025407
21R:R:Y226 5.668506
22R:R:L247 4.765418
23R:R:W258 9.054518
24R:R:F264 7.024504
25R:R:I265 2.25407
26R:R:N300 7.262519
27R:R:Q301 6.48333619
28R:R:D304 7.7775419
29R:R:V307 3.3975408
30R:R:Y308 8.08519
31L:L:?1 6.979381610
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:C105 R:R:C183 14.1697.28NoNo099
2R:R:C183 R:R:M108 15.32863.24NoNo096
3R:R:M108 R:R:M112 18.41865.78NoNo068
4L:L:?1 R:R:M112 41.43285.99YesNo008
5L:L:?1 R:R:S181 33.92765.3YesNo108
6R:R:P179 R:R:S181 33.47993.56NoNo088
7R:R:P179 R:R:Y178 31.24611.13NoYes083
8R:R:E287 R:R:Y178 18.894210.1NoYes033
9L:L:?1 R:R:H89 11.25789.07YesNo107
10R:R:H89 R:R:P28 10.74454.58NoNo076
11L:L:?1 R:R:Q301 99.82614.7YesYes109
12R:R:D74 R:R:Q301 69.35769.14YesYes199
13R:R:D74 R:R:N42 11.06926.73YesNo099
14L:L:?1 R:R:W258 34.30984.82YesYes108
15R:R:N300 R:R:W258 34.409812.43YesYes198
16R:R:D304 R:R:N300 65.79529.42YesYes199
17R:R:D304 R:R:Y308 1006.9YesYes199
18R:R:I250 R:R:Y308 31.754414.51NoYes089
19R:R:N300 R:R:Q301 32.14646.6YesYes199
20R:R:D304 R:R:D74 35.25616.65YesYes199
21R:R:D74 R:R:L70 37.92628.14YesYes199
22R:R:L70 R:R:Y308 38.64624.69YesYes199
23R:R:L67 R:R:Y308 43.62243.52YesYes189
24R:R:F63 R:R:L67 29.49446.09NoYes188
25R:R:F63 R:R:R130 57.71110.69NoYes189
26R:R:Q246 R:R:R130 15.115415.19NoYes089
27R:R:Q246 R:R:R312 13.060326.87NoNo089
28R:R:M126 R:R:Y308 63.705710.78YesYes199
29R:R:F63 R:R:M126 30.29974.98NoYes189
30R:R:F66 R:R:M126 36.39764.98YesYes079
31R:R:F66 R:R:S62 25.50726.61YesNo076
32R:R:E129 R:R:S62 23.2527.19NoNo096
33R:R:C105 R:R:W95 10.67063.92NoYes096
34R:R:F184 R:R:M112 24.43784.98YesNo088
35R:R:F184 R:R:I113 23.75063.77YesYes087
36R:R:I113 R:R:Y174 17.33944.84YesYes076
37R:R:F184 R:R:L185 22.617312.18YesNo085
38R:R:F196 R:R:L185 18.54988.53YesNo075
39R:R:L132 R:R:Y131 12.95213.52NoYes067
40R:R:L132 R:R:R140 17.564113.36NoYes068
41R:R:E129 R:R:R140 20.988716.28NoYes098
42R:R:M243 R:R:R130 40.90143.72NoYes189
43R:R:I250 R:R:N215 23.18644.25NoNo089
44R:R:L247 R:R:N215 22.09415.49YesNo089
45R:R:L247 R:R:M243 19.8984.24YesNo188
46R:R:L222 R:R:M243 57.73562.83NoNo088
47R:R:F196 R:R:L166 11.024.87YesNo078
48R:R:E287 R:R:L282 10.72975.3NoNo034
49R:R:F184 R:R:W182 24.61337.02YesYes087
50R:R:Q177 R:R:W182 21.76129.86NoYes077
51L:L:?1 R:R:W182 44.439212.86YesYes107
52R:R:L290 R:R:Q177 20.64262.66NoNo067
53R:R:F264 R:R:L290 19.67337.31YesNo046
54R:R:F264 R:R:T268 10.62647.78YesNo046
55R:R:L222 R:R:M244 48.34594.24NoNo086
56R:R:M244 R:R:Y226 41.84453.59NoYes066
57R:R:E240 R:R:Y226 25.98121.12NoYes086
58R:R:E240 R:R:R235 16.16676.98NoNo087
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:H89 R:R:P28 4.58 1 No No 7 6 1 2
R:R:F30 R:R:F34 4.29 0 No No 5 8 2 2
R:R:F30 R:R:R295 23.52 0 No No 5 8 2 1
L:L:?1 R:R:A31 6.67 1 Yes No 0 7 0 1
R:R:F34 R:R:T298 5.19 0 No No 8 8 2 1
L:L:?1 R:R:C35 5.6 1 Yes No 0 6 0 1
R:R:D74 R:R:P119 6.44 1 Yes No 9 8 2 2
R:R:D74 R:R:Q301 9.14 1 Yes Yes 9 9 2 1
R:R:L78 R:R:Q301 3.99 1 No Yes 8 9 1 1
L:L:?1 R:R:L78 5.86 1 Yes No 0 8 0 1
L:L:?1 R:R:T81 10.4 1 Yes No 0 7 0 1
L:L:?1 R:R:V85 9.46 1 Yes No 0 8 0 1
R:R:H89 R:R:S181 8.37 1 No No 7 8 1 1
L:L:?1 R:R:H89 9.07 1 Yes No 0 7 0 1
R:R:M108 R:R:M112 5.78 0 No No 6 8 2 1
R:R:F184 R:R:M112 4.98 0 Yes No 8 8 2 1
L:L:?1 R:R:M112 5.99 1 Yes No 0 8 0 1
L:L:?1 R:R:G116 6.03 1 Yes No 0 7 0 1
R:R:P119 R:R:Q301 7.9 1 No Yes 8 9 2 1
R:R:L120 R:R:W258 13.67 0 No Yes 8 8 2 1
R:R:Q177 R:R:W182 9.86 0 No Yes 7 7 2 1
R:R:P179 R:R:S181 3.56 0 No No 8 8 2 1
L:L:?1 R:R:S181 5.3 1 Yes No 0 8 0 1
R:R:F184 R:R:W182 7.02 0 Yes Yes 8 7 2 1
R:R:L294 R:R:W182 6.83 1 No Yes 7 7 1 1
L:L:?1 R:R:W182 12.86 1 Yes Yes 0 7 0 1
R:R:A297 R:R:W258 7.78 0 No Yes 8 8 2 1
R:R:N300 R:R:W258 12.43 1 Yes Yes 9 8 2 1
R:R:Q301 R:R:W258 6.57 1 Yes Yes 9 8 1 1
L:L:?1 R:R:W258 4.82 1 Yes Yes 0 8 0 1
R:R:L291 R:R:R295 12.15 0 No No 7 8 2 1
L:L:?1 R:R:L294 7.81 1 Yes No 0 7 0 1
L:L:?1 R:R:R295 4.29 1 Yes No 0 8 0 1
L:L:?1 R:R:T298 10.4 1 Yes No 0 8 0 1
R:R:N300 R:R:Q301 6.6 1 Yes Yes 9 9 2 1
L:L:?1 R:R:Q301 4.7 1 Yes Yes 0 9 0 1
R:R:T81 R:R:V111 3.17 0 No No 7 5 1 2
L:L:?1 R:R:G82 2.41 1 Yes No 0 8 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XJO_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 282
Number of Links 295
Number of Hubs 31
Number of Links mediated by Hubs 125
Number of Communities 5
Number of Nodes involved in Communities 35
Number of Links involved in Communities 48
Path Summary
Number Of Nodes in MetaPath 59
Number Of Links MetaPath 58
Number of Shortest Paths 106125
Length Of Smallest Path 3
Average Path Length 14.7202
Length of Longest Path 27
Minimum Path Strength 1.105
Average Path Strength 6.80018
Maximum Path Strength 16.92
Minimum Path Correlation 0.7
Average Path Correlation 0.915622
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 41.7567
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.3661
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• response to stimulus   • response to chemical   • response to xenobiotic stimulus   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • regulation of tube diameter   • multicellular organismal process   • regulation of biological process   • system process   • regulation of tube size   • regulation of system process   • positive regulation of biological process   • positive regulation of vasoconstriction   • circulatory system process   • regulation of blood circulation   • vascular process in circulatory system   • regulation of vasoconstriction   • positive regulation of multicellular organismal process   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • vasoconstriction   • blood circulation   • regulation of anatomical structure size   • response to ketone   • response to lipid   • response to oxygen-containing compound   • response to testosterone   • regulation of blood pressure   • positive regulation of blood pressure   • smooth muscle contraction   • muscle contraction   • muscle system process   • cellular response to stimulus   • biological process involved in interspecies interaction between organisms   • response to other organism   • cellular response to lipopolysaccharide   • response to external stimulus   • cellular response to molecule of bacterial origin   • response to lipopolysaccharide   • cellular response to oxygen-containing compound   • response to biotic stimulus   • cellular response to biotic stimulus   • cellular response to chemical stimulus   • response to bacterium   • cellular response to lipid   • cellular process   • response to external biotic stimulus   • response to molecule of bacterial origin   • response to alcohol   • response to ethanol   • regulation of cellular process   • signaling   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • regulation of developmental process   • angiogenesis   • regulation of vasculature development   • positive regulation of developmental process   • multicellular organism development   • tube morphogenesis   • anatomical structure development   • regulation of anatomical structure morphogenesis   • blood vessel development   • system development   • developmental process   • regulation of multicellular organismal development   • blood vessel morphogenesis   • tube development   • positive regulation of angiogenesis   • vasculature development   • circulatory system development   • anatomical structure morphogenesis   • positive regulation of vasculature development   • regulation of angiogenesis   • anatomical structure formation involved in morphogenesis   • negative regulation of locomotion   • regulation of cell motility   • cell migration involved in sprouting angiogenesis   • regulation of blood vessel endothelial cell migration   • endothelial cell migration   • negative regulation of biological process   • negative regulation of endothelial cell migration   • negative regulation of blood vessel endothelial cell migration   • regulation of cell migration   • negative regulation of cellular process   • regulation of endothelial cell migration   • blood vessel endothelial cell migration   • cell migration   • cell motility   • locomotion   • negative regulation of cell migration   • regulation of cell migration involved in sprouting angiogenesis   • sprouting angiogenesis   • regulation of locomotion   • negative regulation of cell motility   • negative regulation of cell migration involved in sprouting angiogenesis   • positive regulation of smooth muscle contraction   • regulation of muscle system process   • regulation of muscle contraction   • regulation of smooth muscle contraction   • positive regulation of muscle contraction   • regulation of body fluid levels   • positive regulation of coagulation   • regulation of response to external stimulus   • positive regulation of blood coagulation   • regulation of response to wounding   • regulation of coagulation   • positive regulation of response to stimulus   • response to stress   • regulation of response to stress   • coagulation   • positive regulation of hemostasis   • response to wounding   • regulation of hemostasis   • positive regulation of response to wounding   • wound healing   • regulation of blood coagulation   • hemostasis   • blood coagulation   • positive regulation of wound healing   • regulation of response to stimulus   • regulation of wound healing   • defense response   • inflammatory response   • response to nutrient levels   • response to nutrient   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • cellular anatomical structure   • nucleoplasm   • organelle lumen
Gene OntologyCellular Component• membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • intracellular organelle lumen   • nuclear speck   • ribonucleoprotein granule   • intracellular organelle   • nuclear body   • cellular anatomical structure   • nucleoplasm   • organelle lumen   • organelle   • membraneless organelle   • supramolecular complex   • nuclear ribonucleoprotein granule   • nuclear lumen   • cell periphery   • plasma membrane   • membrane   • acrosomal vesicle   • intracellular vesicle   • endomembrane system   • cytoplasmic vesicle   • secretory granule   • secretory vesicle   • cytoplasm   • vesicle   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • extracellular membrane-bounded organelle   • synapse   • cell junction   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePUC
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePUC
Name(5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid
Synonyms15-Hydroxy-11 alpha,9 alpha-(epoxymethano)prosta-5,13-dienoic Acid
Identifier
FormulaC21 H34 O4
Molecular Weight350.492
SMILES
PubChem5311493
Formal Charge0
Total Atoms59
Total Chiral Atoms5
Total Bonds60
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21731
Sequence
>8XJO_nogp_Chain_R
CFRPTNITL EERRLIASP WFAASFCVV GLASNLLAL SVLAGARQG 
GSHTRSSFL TFLCGLVLT DFLGLLVTG TIVVSQHAA LFEWHAVDP 
GCRLCRFMG VVMIFFGLS PLLLGAAMA SERYLGITR PFSRPAVAS 
QRRAWATVG LVWAAALAL GLLPLLGVG RYTVQYPGS WCFLTLGAE 
SGDVAFGLL FSMLGGLSV GLSFLLNTV SVATLCHVY HGQEAAQQR 
PRDSEVEMM AQLLGIMVV ASVCWLPLL VFIAQTVLR NPPAMSPAG 
QLSRTTEKE LLIYLRVAT WNQILDPWV YILFRRAVL RRLQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6IIUALipidProstanoidTXA2Homo sapiensRamatroban--2.52018-12-19doi.org/10.1038/s41589-018-0170-9
6IIVALipidProstanoidTXA2Homo sapiensDaltroban--32018-12-19doi.org/10.1038/s41589-018-0170-9
8XJNALipidProstanoidTXA2Homo sapiensCloprosetnol-chim(NtGi1-Gs-CtGq)/β1/γ23.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJN (No Gprot) ALipidProstanoidTXA2Homo sapiensCloprosetnol-3.062024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJOALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi1-Gs-CtGq)/β1/γ23.112024-02-28doi.org/10.1016/j.celrep.2024.113893
8XJO (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.112024-02-28doi.org/10.1016/j.celrep.2024.113893
9GG5ALipidProstanoidTXA2Homo sapiensU46619-chim(NtGi2L-Gs-CtGq)/β1/γ23.262025-08-27To be published
9GG5 (No Gprot) ALipidProstanoidTXA2Homo sapiensU46619-3.262025-08-27To be published
9GGGALipidProstanoidTXA2Homo sapiensI-BOP-chim(NtGi2L-Gs-CtGq)/β1/γ23.252025-08-27To be published
9GGG (No Gprot) ALipidProstanoidTXA2Homo sapiensI-BOP-3.252025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XJO_nogp.zip



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