Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C90 5.2625427
2R:R:F100 6.958504
3R:R:N119 5.985409
4R:R:Y124 5.4775403
5R:R:M132 7.1407
6R:R:G135 3.235437
7R:R:L139 4.002507
8R:R:H150 6.756508
9R:R:I155 4.122507
10R:R:W167 7.776519
11R:R:F169 3.3475407
12R:R:F179 3.6425406
13R:R:W226 6.605409
14R:R:E236 9.328515
15R:R:H258 6.5025404
16R:R:Q261 4.636502
17R:R:M266 5.2075404
18R:R:Y269 7.2925413
19R:R:F278 6.425446
20R:R:F280 8.8725405
21R:R:F282 7.6675448
22R:R:F292 5.312567
23R:R:F332 4.406549
24R:R:W336 5.84167648
25R:R:H340 9.0975448
26R:R:Y350 6.42422
27R:R:R357 4.765425
28R:R:L364 5.1475403
29R:R:L386 4.528559
30R:R:F393 5.19667659
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:R357 R:R:Y350 13.37667.2YesYes252
2R:R:L361 R:R:Y350 30.34099.38NoYes032
3R:R:L361 R:R:L365 31.67852.77NoNo033
4R:R:L365 R:R:Y369 32.635.86NoNo033
5R:R:F100 R:R:Y369 35.182219.6YesNo043
6R:R:F100 R:R:I370 47.73052.51YesNo045
7R:R:I370 R:R:M374 48.91142.92NoNo057
8R:R:M374 R:R:P338 50.076.71NoNo079
9R:R:L337 R:R:P338 51.21733.28NoNo059
10R:R:F282 R:R:L337 52.35353.65YesNo085
11R:R:F282 R:R:H340 53.579213.58YesYes488
12R:R:H340 R:R:W336 89.75778.46YesYes488
13R:R:F332 R:R:W336 90.97787.02YesYes498
14R:R:F332 R:R:T188 1002.59YesNo099
15R:R:D147 R:R:T188 44.23244.34NoNo099
16R:R:D147 R:R:S379 43.48247.36NoNo099
17R:R:H150 R:R:S379 19.2036.97YesNo089
18R:R:H150 R:R:I155 14.36176.63YesYes087
19R:R:I155 R:R:S108 12.39163.1YesNo077
20R:R:I151 R:R:S379 27.53123.1NoNo069
21R:R:I151 R:R:I155 18.66014.42NoYes067
22R:R:I151 R:R:N119 21.12832.83NoYes069
23R:R:N119 R:R:P383 12.693813.03YesNo099
24R:R:G118 R:R:P383 11.51844.06NoNo089
25R:R:A144 R:R:N119 12.93454.69NoYes099
26R:R:G118 R:R:I117 10.44941.76NoNo085
27R:R:L143 R:R:T188 69.07714.42NoNo099
28R:R:L143 R:R:N382 46.27532.75NoNo099
29R:R:L328 R:R:N382 45.38535.49NoNo089
30R:R:L328 R:R:L386 43.66715.54NoYes589
31R:R:F393 R:R:L386 39.8788.53YesYes599
32R:R:F393 R:R:M132 28.34847.46YesYes097
33R:R:I125 R:R:M132 23.02012.92NoYes077
34R:R:F397 R:R:I125 20.28888.79NoNo077
35R:R:F397 R:R:T121 11.90463.89NoNo076
36R:R:L143 R:R:S191 33.97326.01NoNo098
37R:R:L139 R:R:S191 22.5223YesNo078
38R:R:F393 R:R:N137 19.85222.42YesNo098
39R:R:N134 R:R:N137 18.542610.9NoNo088
40R:R:N134 R:R:P136 11.35618.15NoNo388
41R:R:P136 R:R:R199 10.19762.88NoNo089
42R:R:H340 R:R:L277 68.99316.43YesNo086
43R:R:K182 R:R:L277 67.63317.05NoNo046
44R:R:E236 R:R:K182 66.91119.45YesNo054
45R:R:E236 R:R:P178 18.93999.43YesNo155
46R:R:P178 R:R:V177 17.88215.3NoNo055
47R:R:V177 R:R:W167 15.78893.68NoYes059
48R:R:F169 R:R:W167 29.02564.01YesYes079
49R:R:F169 R:R:M173 19.35414.98YesNo076
50R:R:L176 R:R:M173 17.94932.83NoNo056
51R:R:I180 R:R:L176 16.70681.43NoNo055
52R:R:E236 R:R:F240 30.69359.33YesNo155
53R:R:C174 R:R:F240 29.70842.79NoNo195
54R:R:C174 R:R:W167 15.51463.92NoYes199
55R:R:C174 R:R:C255 13.16395.46NoNo199
56R:R:C255 R:R:I242 15.11173.27NoNo095
57R:R:I242 R:R:R253 11.68082.51NoNo055
58R:R:D166 R:R:R253 10.25915.96NoNo055
59R:R:F179 R:R:I180 11.07635.02YesNo065
60R:R:I225 R:R:S191 10.74613.1NoNo078
61R:R:F332 R:R:L192 20.07614.87YesNo098
62R:R:L192 R:R:V329 18.59855.96NoNo088
63R:R:F292 R:R:S196 12.53152.64YesNo679
64R:R:S196 R:R:T289 15.60984.8NoNo098
65R:R:T289 R:R:V329 17.10987.93NoNo088
66R:R:E236 R:R:K273 20.75899.45YesNo157
67R:R:K273 R:R:L257 20.30562.82NoNo075
68R:R:L257 R:R:Q261 17.80942.66NoYes052
69R:R:F280 R:R:W276 10.343114.03YesNo054
70R:R:L339 R:R:W336 10.76293.42NoYes068
71R:R:F278 R:R:I344 10.68455.02YesNo066
72R:R:C335 R:R:N378 10.8024.72NoNo089
73R:R:F393 R:R:L122 10.84683.65YesNo599
74R:R:A144 R:R:L122 12.16214.73NoNo099
75R:R:F278 R:R:H340 11.52967.92YesYes468
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9KDG
Class A
SubFamily Peptide
Type Endothelin
SubType ETB
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.33
Date 2025-05-07
D.O.I. doi.org/10.1038/s41467-025-57960-x
Net Summary
Imin 2.59
Number of Linked Nodes 273
Number of Links 291
Number of Hubs 30
Number of Links mediated by Hubs 120
Number of Communities 7
Number of Nodes involved in Communities 37
Number of Links involved in Communities 44
Path Summary
Number Of Nodes in MetaPath 76
Number Of Links MetaPath 75
Number of Shortest Paths 37869
Length Of Smallest Path 3
Average Path Length 14.4456
Length of Longest Path 33
Minimum Path Strength 1.345
Average Path Strength 5.45874
Maximum Path Strength 13.98
Minimum Path Correlation 0.7
Average Path Correlation 0.931578
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 53.1154
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 31.8784
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• protein binding   • binding   • signaling receptor binding   • isomerase activity   • catalytic activity, acting on a protein   • peptidyl-prolyl cis-trans isomerase activity   • catalytic activity   • cis-trans isomerase activity   • FK506 binding   • macrolide binding   • channel regulator activity   • ion channel regulator activity   • calcium channel regulator activity   • molecular function regulator activity   • transporter regulator activity   • transmembrane transporter binding   • molecular function inhibitor activity   • transporter inhibitor activity   • calcium channel inhibitor activity   • ion channel inhibitor activity   • channel inhibitor activity   • protein refolding   • primary metabolic process   • gene expression   • macromolecule biosynthetic process   • protein maturation   • protein folding   • biosynthetic process   • metabolic process   • cellular process   • protein metabolic process   • macromolecule metabolic process   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality
Gene OntologyBiological Process• protein refolding   • primary metabolic process   • gene expression   • macromolecule biosynthetic process   • protein maturation   • protein folding   • biosynthetic process   • metabolic process   • cellular process   • protein metabolic process   • macromolecule metabolic process   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • regulation of calcium ion transport   • regulation of localization   • regulation of cellular process   • transport   • monoatomic ion transmembrane transport   • negative regulation of monoatomic ion transport   • negative regulation of biological process   • negative regulation of transport   • regulation of monoatomic ion transmembrane transport   • calcium ion transport   • metal ion transport   • negative regulation of transmembrane transport   • regulation of calcium ion transmembrane transport   • monoatomic cation transmembrane transport   • localization   • negative regulation of monoatomic ion transmembrane transport   • negative regulation of release of sequestered calcium ion into cytosol   • negative regulation of cellular process   • monoatomic ion transport   • negative regulation of cation transmembrane transport   • monoatomic cation transport   • regulation of metal ion transport   • regulation of biological process   • calcium ion transmembrane import into cytosol   • regulation of transport   • regulation of release of sequestered calcium ion into cytosol   • regulation of monoatomic ion transport   • establishment of localization   • negative regulation of calcium ion transport   • transmembrane transport   • release of sequestered calcium ion into cytosol   • regulation of transmembrane transport   • regulation of monoatomic cation transmembrane transport   • negative regulation of calcium ion transmembrane transport   • calcium ion transmembrane transport   • response to stimulus   • response to redox state   • sarcoplasmic reticulum calcium ion transport   • release of sequestered calcium ion into cytosol by sarcoplasmic reticulum   • release of sequestered calcium ion into cytosol by endoplasmic reticulum   • regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum   • multicellular organismal process   • system process   • smooth muscle contraction   • muscle contraction   • muscle system process   • cellular response to stimulus   • signaling   • intracellular signal transduction   • cell communication   • calcium-mediated signaling   • intracellular signaling cassette   • signal transduction   • establishment of protein localization   • nitrogen compound transport   • carbohydrate homeostasis   • establishment of localization in cell   • intracellular protein localization   • regulation of hormone levels   • establishment of protein localization to extracellular region   • intracellular glucose homeostasis   • protein secretion   • cellular response to oxygen-containing compound   • cellular response to carbohydrate stimulus   • chemical homeostasis   • response to glucose   • response to chemical   • glucose homeostasis   • insulin secretion involved in cellular response to glucose stimulus   • cellular localization   • homeostatic process   • hormone secretion   • protein localization to extracellular region   • peptide secretion   • secretion by cell   • response to monosaccharide   • response to carbohydrate   • signal release   • cellular response to hexose stimulus   • intracellular chemical homeostasis   • cellular response to monosaccharide stimulus   • secretion   • cell-cell signaling   • export from cell   • response to oxygen-containing compound   • cellular response to glucose stimulus   • peptide transport   • response to hexose   • cellular response to chemical stimulus   • cellular homeostasis   • protein transport   • peptide hormone secretion   • macromolecule localization   • hormone transport   • insulin secretion   • cell population proliferation   • cell activation   • lymphocyte activation   • leukocyte proliferation   • leukocyte activation   • mononuclear cell proliferation   • immune system process   • T cell activation   • lymphocyte proliferation   • T cell proliferation   • negative regulation of protein transport   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • negative regulation of establishment of protein localization   • regulation of protein secretion   • regulation of secretion   • negative regulation of protein secretion   • regulation of response to stimulus   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • negative regulation of signaling   • negative regulation of cell communication   • negative regulation of peptide secretion   • regulation of secretion by cell   • negative regulation of protein localization   • regulation of signaling   • negative regulation of response to stimulus   • regulation of peptide transport   • negative regulation of insulin secretion involved in cellular response to glucose stimulus   • regulation of establishment of protein localization   • regulation of protein transport   • negative regulation of insulin secretion   • regulation of cellular localization   • regulation of insulin secretion   • regulation of insulin secretion involved in cellular response to glucose stimulus   • regulation of cell communication   • regulation of heart contraction   • regulation of system process   • cardiac muscle contraction   • circulatory system process   • regulation of cardiac muscle contraction   • regulation of blood circulation   • regulation of striated muscle contraction   • regulation of muscle contraction   • heart process   • regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion   • striated muscle contraction   • regulation of multicellular organismal process   • blood circulation   • regulation of cardiac muscle contraction by calcium ion signaling   • regulation of muscle system process   • heart contraction   • negative regulation of intracellular signal transduction   • regulation of signal transduction   • regulation of intracellular signal transduction   • regulation of calcium-mediated signaling   • negative regulation of calcium-mediated signaling   • negative regulation of signal transduction   • 'de novo' protein folding   • negative regulation of heart rate   • negative regulation of blood circulation   • negative regulation of heart contraction   • negative regulation of multicellular organismal process   • regulation of heart rate   • nervous system process   • action potential propagation   • action potential   • transmission of nerve impulse   • neuronal action potential propagation   • regulation of membrane potential   • cellular anatomical structure   • membrane   • intracellular anatomical structure   • intracellular membraneless organelle   • Z disc   • sarcomere   • intracellular organelle   • I band   • organelle   • membraneless organelle   • contractile muscle fiber   • cytoplasm   • supramolecular fiber   • myofibril
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • intracellular anatomical structure   • intracellular membraneless organelle   • Z disc   • sarcomere   • intracellular organelle   • I band   • organelle   • membraneless organelle   • contractile muscle fiber   • cytoplasm   • supramolecular fiber   • myofibril   • supramolecular polymer   • supramolecular complex   • membrane-bounded organelle   • organelle subcompartment   • intracellular membrane-bounded organelle   • endomembrane system   • sarcoplasm   • endoplasmic reticulum subcompartment   • bounding membrane of organelle   • nuclear outer membrane-endoplasmic reticulum membrane network   • endoplasmic reticulum   • sarcoplasmic reticulum   • sarcoplasmic reticulum membrane   • organelle membrane   • endoplasmic reticulum membrane   • protein-containing complex   • transmembrane transporter complex   • membrane protein complex   • cation channel complex   • transporter complex   • calcium channel complex   • monoatomic ion channel complex
SCOP2Domain Identifier• Rotamase-like
SCOP2Family Identifier• Rotamase-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP24530
Sequence
>9KDG_Chain_R
CQGPIEIKE TFKYINTVV SCLVFVLGI IGNSTLLII YKNKCMRNG 
PNILIASLA LGDLLHIVI IPINVYKLL AEDWPFGAE MCKLVPFIQ 
KASVGITVL SLCALSIDR YRAVAVPKW TAVEIVLIW VVSVVLAVP 
EAIGFDIIT MDYKGSYLR ICLLHPVQK TAFMQFYTA KDWWLFSFY 
FCLPLAITA FFYTLMTCE MLRKKDHLK QRREVAKTV FCLVLVFAL 
CWLPLHLRI LKLTLYNQN DPNRCELLS FLLVLDYIG INMASLNSC 
NPIALYLVS KRFKNFKSL CCWYAAAAA A


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5GLHAPeptideEndothelinETBHomo sapiensEndothelin-1--2.82016-09-07doi.org/10.1038/nature19319
5GLIAPeptideEndothelinETBHomo sapiens---2.52016-09-07doi.org/10.1038/nature19319
5X93APeptideEndothelinETBHomo sapiensK-8794--2.22017-08-16doi.org/10.1038/nsmb.3450
5XPRAPeptideEndothelinETBHomo sapiensBosentan--3.62017-08-16doi.org/10.1038/nsmb.3450
6IGKAPeptideEndothelinETBHomo sapiensEndothelin-3--22018-11-21doi.org/10.1038/s41467-018-07094-0
6IGLAPeptideEndothelinETBHomo sapiensIRL1620--2.72018-11-21doi.org/10.1038/s41467-018-07094-0
6K1QAPeptideEndothelinETBHomo sapiensIRL2500--2.72019-07-17doi.org/10.1038/s42003-019-0482-7
6LRYAPeptideEndothelinETBHomo sapiensSarafotoxin-B--32020-02-12doi.org/10.1016/j.bbrc.2019.12.091
8HBDAPeptideEndothelinETBHomo sapiensIRL1620-Gi1/β1/γ22.992023-03-22doi.org/10.1038/s41467-023-36998-9
8HBD (No Gprot) APeptideEndothelinETBHomo sapiensIRL1620-2.992023-03-22doi.org/10.1038/s41467-023-36998-9
8HCXAPeptideEndothelinETBHomo sapiensEndothelin-1-chim(NtGi2L-Gs-CtGq)/β1/γ23.52023-03-22doi.org/10.1038/s41467-023-36998-9
8HCX (No Gprot) APeptideEndothelinETBHomo sapiensEndothelin-1-3.52023-03-22doi.org/10.1038/s41467-023-36998-9
8IY5APeptideEndothelinETBHomo sapiensEndothelin-1-Gi1/β1/γ22.82023-08-16doi.org/10.7554/eLife.85821
8IY5 (No Gprot) APeptideEndothelinETBHomo sapiensEndothelin-1-2.82023-08-16doi.org/10.7554/eLife.85821
8IY6APeptideEndothelinETBHomo sapiensEndothelin-1--3.132023-08-16doi.org/10.7554/eLife.85821
8XVEAPeptideEndothelinETBHomo sapiensBQ3020-chim(Gs-CtGq)/β1/γ232024-08-28doi.org/10.1038/s41421-024-00705-9
8XVE (No Gprot) APeptideEndothelinETBHomo sapiensBQ3020-32024-08-28doi.org/10.1038/s41421-024-00705-9
8XVHAPeptideEndothelinETBHomo sapiensEndothelin-1-chim(Gs-CtGq)/β1/γ23.262024-08-28doi.org/10.1038/s41421-024-00705-9
8XVH (No Gprot) APeptideEndothelinETBHomo sapiensEndothelin-1-3.262024-08-28doi.org/10.1038/s41421-024-00705-9
8XWPAPeptideEndothelinETBHomo sapiensEndothelin-1-Gi1/β1/γ23.212024-10-02doi.org/10.1038/s42003-024-06905-z
8XWP (No Gprot) APeptideEndothelinETBHomo sapiensEndothelin-1-3.212024-10-02doi.org/10.1038/s42003-024-06905-z
8XWQAPeptideEndothelinETBHomo sapiensEndothelin-1-Gi1/β1/γ24.62024-10-02doi.org/10.1038/s42003-024-06905-z
8XWQ (No Gprot) APeptideEndothelinETBHomo sapiensEndothelin-1-4.62024-10-02doi.org/10.1038/s42003-024-06905-z
8ZRTAPeptideEndothelinETBHomo sapiensEndothelin-1--3.622024-10-02doi.org/10.1038/s42003-024-06905-z
9KDFAPeptideEndothelinETBHomo sapiensRES-701-3--3.32025-05-07doi.org/10.1038/s41467-025-57960-x




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9KDG.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.