Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.42556910
2R:R:F33 4.642507
3R:R:F37 4.6825407
4R:R:V47 5.445429
5R:R:Y64 5.06628
6R:R:D71 7.066529
7R:R:F74 11.7525417
8R:R:K85 8.1825435
9R:R:H90 5.4025404
10R:R:W91 7.21875819
11R:R:P92 6.74412
12R:R:F93 6.65167617
13R:R:F102 3.9925416
14R:R:D106 8.342515
15R:R:F110 10.1475417
16R:R:I119 5.2075429
17R:R:R123 6.34429
18R:R:C124 3.6925478
19R:R:W132 6.06404
20R:R:R137 7.156556
21R:R:W150 4.37469
22R:R:L156 4.25405
23R:R:T157 5.98417
24R:R:F180 9.972505
25R:R:V195 4.4925404
26R:R:R201 7.37415
27R:R:R205 5.755406
28R:R:P213 4.21409
29R:R:Y221 8.67508
30R:R:L223 3.29474
31R:R:W254 5.16857719
32R:R:Y257 4.935407
33R:R:R267 7.735404
34R:R:I268 4.335403
35R:R:R269 6.1775401
36R:R:F291 8.765417
37R:R:F292 4.5445
38R:R:L296 3.45446
39R:R:N297 6.684529
40R:R:Y301 5.54286729
41R:R:V302 6.2875427
42R:R:F303 5.36427
43R:R:F308 3.965429
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:L2 31.35415.02YesNo100
2L:L:L2 R:R:F102 28.16963.65NoYes106
3L:L:?1 R:R:W254 1003.1YesYes109
4R:R:L109 R:R:W254 32.37024.56NoYes189
5R:R:F291 R:R:L109 30.46294.87YesNo178
6R:R:F291 R:R:F33 52.02515.36YesYes077
7R:R:F33 R:R:T29 24.52253.89YesNo075
8R:R:T29 R:R:V285 13.32843.17NoNo056
9R:R:L25 R:R:V285 11.41264.47NoNo026
10R:R:F33 R:R:L78 13.50727.31YesNo078
11R:R:F250 R:R:W254 61.06775.01NoYes099
12R:R:F250 R:R:I116 62.74811.3NoNo098
13R:R:I116 R:R:Y301 62.33089.67NoYes289
14R:R:V246 R:R:Y301 53.54363.79NoYes089
15R:R:L300 R:R:V246 14.69935.96NoNo088
16R:R:L296 R:R:L300 11.80434.15YesNo068
17R:R:N293 R:R:W254 63.17379.04NoYes099
18R:R:N293 R:R:N297 62.992112.26NoYes099
19R:R:N297 R:R:Y301 74.35934.65YesYes299
20R:R:F37 R:R:L78 11.59423.65YesNo078
21R:R:Y301 R:R:Y64 58.72624.96YesYes298
22R:R:D71 R:R:N297 17.77036.73YesYes299
23R:R:F308 R:R:Y64 19.43634.13YesYes298
24R:R:F308 R:R:M55 17.33324.98YesNo095
25R:R:M55 R:R:V50 11.64534.56NoNo057
26R:R:R54 R:R:V50 10.20922.62NoNo057
27R:R:T60 R:R:Y64 37.89356.24NoYes078
28R:R:R137 R:R:T60 32.44123.88YesNo067
29R:R:R123 R:R:Y301 39.63616.17YesYes299
30L:L:?1 R:R:D106 21.142114.77YesYes105
31R:R:D106 R:R:T157 22.067411.56YesYes157
32R:R:I107 R:R:T157 17.74474.56NoYes057
33R:R:I107 R:R:N108 15.07685.66NoNo058
34R:R:N108 R:R:W150 12.38613.39NoYes089
35R:R:F74 R:R:S294 28.35415.28YesNo078
36R:R:C176 R:R:F102 29.00972.79NoYes196
37R:R:C176 R:R:W91 24.26710.45NoYes199
38R:R:P92 R:R:W91 14.86115.4YesYes129
39R:R:H90 R:R:P92 12.5827.63YesYes042
40L:L:?1 R:R:R201 47.708112.12YesYes105
41R:R:F178 R:R:R201 52.01947.48NoYes045
42R:R:F178 R:R:F180 50.99218.22NoYes045
43R:R:F180 R:R:R163 17.10335.34YesNo055
44R:R:P182 R:R:R163 14.49782.88NoNo045
45L:L:?1 R:R:F110 16.566920.98YesYes107
46R:R:F110 R:R:L156 12.38618.53YesYes075
47R:R:R123 R:R:Y221 43.447910.29YesYes098
48R:R:V246 R:R:Y221 39.5513.79NoYes088
49R:R:L243 R:R:Y221 73.121819.93NoYes078
50R:R:I224 R:R:L243 70.84842.85NoNo087
51R:R:C124 R:R:I224 68.29963.27YesNo088
52R:R:C124 R:R:L128 52.64383.17YesNo788
53R:R:C124 R:R:L223 10.53273.17YesYes784
54R:R:K227 R:R:L128 50.26824.23NoNo058
55R:R:R137 R:R:T133 20.27363.88YesNo065
56R:R:T133 R:R:W132 18.84883.64NoYes054
57R:R:F180 R:R:L198 32.36744.87YesNo054
58R:R:I268 R:R:L198 31.14984.28YesNo034
59R:R:I268 R:R:V195 27.53383.07YesYes034
60R:R:R269 R:R:V195 22.481811.77YesYes014
61R:R:K227 R:R:Q231 45.06856.78NoNo055
62R:R:L233 R:R:Q231 42.460215.97NoNo025
63R:R:I228 R:R:L233 39.84622.85NoNo082
64R:R:I228 R:R:I234 26.699410.3NoNo084
65R:R:I228 R:R:L240 10.74564.28NoNo086
66R:R:I234 R:R:P239 21.39768.47NoNo047
67R:R:P239 R:R:R238 18.73812.88NoNo077
68R:R:R238 R:R:V242 10.72576.54NoNo078
69R:R:E270 R:R:R269 12.10514.65NoYes011
70R:R:F291 R:R:F74 25.129818.22YesYes177
71R:R:D71 R:R:S294 28.620911.78YesNo098
72R:R:L67 R:R:Y301 15.01153.52NoYes299
73R:R:D71 R:R:L67 14.84974.07YesNo299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D106 14.77 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F110 20.98 1 Yes Yes 0 7 0 1
L:L:?1 R:R:V113 4.05 1 Yes No 0 8 0 1
L:L:?1 R:R:R201 12.12 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R205 5.51 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W254 3.1 1 Yes Yes 0 9 0 1
L:L:?1 R:R:Y257 4.25 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Q258 6.03 1 Yes No 0 8 0 1
L:L:L2 R:R:F81 3.65 1 No No 0 6 0 1
L:L:L2 R:R:F102 3.65 1 No Yes 0 6 0 1
L:L:F3 R:R:R205 7.48 0 No Yes 0 6 0 1
L:L:F3 R:R:A264 4.16 0 No No 0 4 0 1
R:R:F102 R:R:F81 4.29 1 Yes No 6 6 1 1
R:R:F81 R:R:V105 7.87 1 No No 6 6 1 2
R:R:F102 R:R:V164 5.24 1 Yes No 6 5 1 2
R:R:D106 R:R:F110 3.58 1 Yes Yes 5 7 1 1
R:R:D106 R:R:T157 11.56 1 Yes Yes 5 7 1 2
R:R:D106 R:R:V160 5.84 1 Yes No 5 4 1 2
R:R:D106 R:R:R201 5.96 1 Yes Yes 5 5 1 1
R:R:L109 R:R:W254 4.56 1 No Yes 8 9 2 1
R:R:F110 R:R:F114 7.5 1 Yes No 7 6 1 2
R:R:F110 R:R:L156 8.53 1 Yes Yes 7 5 1 2
R:R:P213 R:R:V113 5.3 0 Yes No 9 8 2 1
R:R:V113 R:R:W254 4.9 1 No Yes 8 9 1 1
R:R:T157 R:R:V160 4.76 1 Yes No 7 4 2 2
R:R:R201 R:R:V160 3.92 1 Yes No 5 4 1 2
R:R:T177 R:R:V167 4.76 0 No No 4 1 1 2
R:R:F178 R:R:R201 7.48 0 No Yes 4 5 2 1
R:R:G202 R:R:R205 4.5 0 No Yes 5 6 2 1
R:R:A261 R:R:R205 5.53 0 No Yes 6 6 2 1
R:R:F210 R:R:Q258 14.05 0 No No 8 8 2 1
R:R:F250 R:R:W254 5.01 0 No Yes 9 9 2 1
R:R:Q258 R:R:W254 4.38 1 No Yes 8 9 1 1
R:R:A290 R:R:W254 5.19 0 No Yes 8 9 2 1
R:R:N293 R:R:W254 9.04 0 No Yes 9 9 2 1
R:R:A261 R:R:Y257 4 0 No Yes 6 7 2 1
R:R:T286 R:R:Y257 7.49 0 No Yes 7 7 2 1
R:R:A290 R:R:Y257 4 0 No Yes 8 7 2 1
R:R:C176 R:R:F102 2.79 1 No Yes 9 6 2 1
L:L:C4 R:R:T177 1.69 0 No No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9KFT_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 287
Number of Links 321
Number of Hubs 43
Number of Links mediated by Hubs 163
Number of Communities 8
Number of Nodes involved in Communities 53
Number of Links involved in Communities 72
Path Summary
Number Of Nodes in MetaPath 74
Number Of Links MetaPath 73
Number of Shortest Paths 78143
Length Of Smallest Path 3
Average Path Length 14.765
Length of Longest Path 34
Minimum Path Strength 1.4
Average Path Strength 6.63521
Maximum Path Strength 18.44
Minimum Path Correlation 0.7
Average Path Correlation 0.931765
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.33333
Average % Of Corr. Nodes 48.9547
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.3241
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • enzyme regulator activity   • adenylate cyclase inhibitor activity   • cyclase regulator activity   • molecular function inhibitor activity   • cyclase inhibitor activity   • molecular function regulator activity   • enzyme inhibitor activity   • adenylate cyclase regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • cell surface receptor signaling pathway   • response to cytokine   • response to chemokine   • cytokine-mediated signaling pathway   • cellular response to chemokine   • chemokine-mediated signaling pathway   • response to peptide   • cellular response to cytokine stimulus   • multicellular organismal process   • system process   • relaxation of smooth muscle   • regulation of system process   • regulation of muscle system process   • muscle system process   • relaxation of muscle   • positive regulation of relaxation of smooth muscle   • positive regulation of relaxation of muscle   • positive regulation of multicellular organismal process   • regulation of multicellular organismal process   • regulation of relaxation of smooth muscle   • regulation of relaxation of muscle   • negative regulation of protein transport   • regulation of localization   • establishment of protein localization   • nitrogen compound transport   • negative regulation of biological process   • negative regulation of transport   • localization   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • intracellular protein localization   • regulation of biological quality   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • regulation of hormone levels   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • establishment of localization   • regulation of protein secretion   • regulation of secretion   • negative regulation of protein secretion   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • transport   • negative regulation of signaling   • hormone secretion   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • regulation of secretion by cell   • secretion by cell   • signal release   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of signaling   • regulation of transport   • secretion   • regulation of peptide transport   • regulation of establishment of protein localization   • export from cell   • cell-cell signaling   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • hormone transport   • regulation of cell communication   • insulin secretion   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • protein localization to cell periphery   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • regulation of protein localization to cell cortex   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle
Gene OntologyCellular Component• midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell periphery   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • cell projection   • sperm principal piece   • cilium   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • plasma membrane bounded cell projection   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • ciliary basal body   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • synapse   • cell junction   • RAGE receptor binding   • signaling receptor binding   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • complement receptor activity   • immune receptor activity   • scavenger receptor binding   • peptide receptor activity   • N-formyl peptide receptor activity   • G protein-coupled peptide receptor activity   • G protein-coupled receptor binding   • chemotaxis   • taxis   • response to external stimulus   • locomotion   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • nitric oxide mediated signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • immune response-regulating cell surface receptor signaling pathway   • complement receptor mediated signaling pathway   • positive regulation of biological process   • positive regulation of response to stimulus   • immune response-activating signaling pathway   • immune response-regulating signaling pathway   • positive regulation of immune response   • regulation of immune system process   • positive regulation of immune system process   • cell surface receptor signaling pathway   • immune response-activating cell surface receptor signaling pathway   • immune response   • regulation of response to stimulus   • immune system process   • regulation of immune response   • activation of immune response   • defense response   • response to stress   • inflammatory response   • intracellular vesicle   • cytoplasmic vesicle membrane   • vesicle membrane   • cytoplasmic vesicle   • secretory granule   • secretory vesicle   • secretory granule membrane   • azurophil granule   • primary lysosome   • azurophil granule membrane   • ficolin-1-rich granule membrane   • ficolin-1-rich granule   • tertiary granule   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeFME
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeFME
NameN-Formylmethionine
Synonyms
  • L-N-Formylmethionine
  • N-formyl-L-methionine
  • Formyl-methionine
  • N-Formylmethionine
  • (2S)-2-(formylamino)-4-(methylthio)butanoic acid
Identifier
FormulaC6 H11 N O3 S
Molecular Weight177.221
SMILES
PubChem439750
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds21
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21462
Sequence
>9KFT_nogp_Chain_R
AGYLFLDII TYLVFAVTF VLGVLGNGL VIWVAGFRM THTVTTISY 
LNLAVADFC FTSTLPFFM VRKAMGGHW PFGWFLCKF VFTIVDINL 
FGSVFLIAL IALDRCVCV LHPVWTQNH RTVSLAKKV IIGPWVMAL 
LLTLPVIIR VTTVPGKTG TVACTFNFS PWTNDPKER INVAVAMLT 
VRGIIRFII GFSAPMSIV AVSYGLIAT KIHKQGLIK SSRPLRVLS 
FVAAAFFLC WSPYQVVAL IATVRIREL LQGMYKEIG IAVDVTSAL 
AFFNSCLNP MLYVFMGQD FRERLIHA


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7T6TAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLFII-Gi1/β1/γ23.22022-03-30doi.org/10.1038/s41467-022-28586-0
7T6T (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLFII-3.22022-03-30doi.org/10.1038/s41467-022-28586-0
7WVUAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-Gi1/β1/γ23.32022-04-13doi.org/10.1038/s41467-022-29361-x
7WVU (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-3.32022-04-13doi.org/10.1038/s41467-022-29361-x
7EUOAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-Gi1/β1/γ22.92022-05-25doi.org/10.1038/s41467-022-32822-y
7EUO (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-2.92022-05-25doi.org/10.1038/s41467-022-32822-y
7VFXAPeptideFormylpeptideFPR1-ALXHomo sapiensfMIFL-Gi1/β1/γ22.82022-09-21doi.org/10.1038/s41467-022-32822-y
7VFX (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMIFL-2.82022-09-21doi.org/10.1038/s41467-022-32822-y
9KFTAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLFC-Gi1/β1/γ23.062025-11-12To be published
9KFT (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLFC-3.062025-11-12To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9KFT_nogp.zip



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