Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C43 3.985498
2R:R:S44 3.4354107
3R:R:P52 3.905498
4R:R:L62 4.96495
5R:R:I64 5.318596
6R:R:M66 4.0454109
7R:R:N67 5.315409
8R:R:F80 5.58407
9R:R:L86 5.856598
10R:R:I96 3.7154159
11R:R:H97 7.9445168
12R:R:L110 4.152509
13R:R:Q113 8.91439
14R:R:R135 14.7525439
15R:R:D137 4.965439
16R:R:V144 4.34419
17R:R:F149 5.4475419
18R:R:H157 6.1375409
19R:R:L158 4.33419
20R:R:W159 10.62439
21R:R:P169 4.93419
22R:R:H171 5.3225401
23R:R:P172 4.062519
24R:R:L176 4.3125409
25R:R:L179 4.4975419
26R:R:L182 4.706518
27R:R:L184 4.312519
28R:R:N187 7.24409
29R:R:I189 5.425419
30R:R:I192 4.6175418
31R:R:F195 6.83254172
32R:R:F197 5.588509
33R:R:L206 4.635409
34R:R:H207 6.725439
35R:R:H209 7.464539
36R:R:I213 8.312519
37R:R:C220 5.2925415
38R:R:F221 6.36509
39R:R:L230 5.5925409
40R:R:N233 6.178539
41R:R:Y234 9436
42R:R:N235 7.985419
43R:R:L237 5.7025408
44R:R:F240 4.97167659
45R:R:K251 6.3454189
46R:R:E252 8.0354189
47R:R:F255 6.042559
48R:R:H256 6.635439
49R:R:F268 5.47333659
50R:R:N271 5.214509
51R:R:L274 5.7475459
52R:R:N314 5.5754207
53R:R:L321 3.81408
54R:R:T327 4.326509
55R:R:T329 4.6725408
56R:R:I334 5.5725407
57R:R:I355 7.1625448
58R:R:N375 6.11549
59R:R:Y378 7.12754241
60R:R:F385 3.94833649
61R:R:L388 3.9425448
62R:R:S397 6.1125468
63R:R:N399 4.8625449
64R:R:I401 6.4425448
65R:R:I404 6.43447
66R:R:R407 6.394114
67R:R:L418 3.8575479
68R:R:D419 9.0475469
69R:R:V420 3.3425406
70R:R:S421 4.455467
71R:R:F422 8.0925464
72R:R:F428 3.992504
73R:R:L439 4.33478
74R:R:K440 7.5525468
75R:R:L441 4.0675408
76R:R:V442 4.5775464
77R:R:D455 5.57404
78R:R:F456 4.202575
79R:R:L462 5.3675477
80R:R:Y468 7.91667629
81R:R:F473 4.434578
82R:R:Y534 7.4825424
83R:R:L535 5.3475429
84R:R:I541 4.51754277
85R:R:R542 7.472529
86R:R:W546 8.28754139
87R:R:F549 5.401437135
88R:R:N556 6.67409
89R:R:K574 4.162507
90R:R:L579 3.9954287
91R:R:S581 4.0625407
92R:R:N584 5.406509
93R:R:M587 5.975406
94R:R:Y590 5.055405
95R:R:F605 5.18714729
96R:R:F608 6.57524
97R:R:I610 5.7475407
98R:R:W612 7.20754299
99R:R:F627 4.345405
100R:R:E630 7.1875408
101R:R:T640 3.79254147
102R:R:R643 8.422508
103R:R:P680 8.615487
104R:R:E686 10.405484
105R:R:Y687 9.3925485
106R:R:P691 4.55167629
107R:R:L694 5.0525407
108R:R:P695 5.052589
109R:R:F696 6.512507
110R:R:P702 4.8954305
111R:R:F706 8.668585
112R:R:F718 6.7325406
113R:R:M721 6.064147
114R:R:L728 2.1485319
115R:R:N731 2.0854313
116R:R:I753 4.0554149
117R:R:F759 9.01409
118R:R:F790 8.09405
119R:R:Y801 7.521676129
120R:R:N805 5.9725128
121R:R:F808 6.99407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I64 R:R:L62 11.178.56YesYes965
2R:R:L62 R:R:L86 16.64784.15YesYes958
3R:R:L110 R:R:L86 30.94634.15YesYes098
4R:R:L110 R:R:L134 44.73324.15YesNo099
5R:R:L134 R:R:L158 58.17574.15NoYes099
6R:R:L158 R:R:L182 59.83744.15YesYes198
7R:R:L182 R:R:L206 71.85884.15YesYes089
8R:R:L206 R:R:L230 73.46974.15YesYes099
9R:R:L230 R:R:L253 80.24964.15YesNo099
10R:R:F255 R:R:L253 80.52987.31YesNo099
11R:R:F255 R:R:F268 80.98373.22YesYes599
12R:R:F268 R:R:F292 99.18745.36YesNo099
13R:R:F292 R:R:L301 99.71912.18NoNo099
14R:R:I303 R:R:L301 96.99475.71NoNo089
15R:R:I303 R:R:T327 97.49713.04NoYes089
16R:R:T327 R:R:T329 98.50196.28YesYes098
17R:R:I331 R:R:T329 1004.56NoYes088
18R:R:I331 R:R:N353 49.97427.08NoNo489
19R:R:N353 R:R:N375 50.06275.45NoYes499
20R:R:N375 R:R:N399 91.30675.45YesYes499
21R:R:N399 R:R:N423 86.24924.09YesNo499
22R:R:N423 R:R:V420 86.36024.43NoYes096
23R:R:L418 R:R:V420 83.68042.98YesYes096
24R:R:L418 R:R:L439 89.72084.15YesYes798
25R:R:L439 R:R:L462 91.62924.15YesYes787
26R:R:L462 R:R:V464 93.86094.47YesNo077
27R:R:P524 R:R:V464 40.86643.53NoNo097
28R:R:P524 R:R:T523 38.44813.5NoNo096
29R:R:S463 R:R:T523 38.22577.99NoNo086
30R:R:S463 R:R:V442 30.87073.23NoYes084
31R:R:F422 R:R:V442 30.12196.55YesYes644
32R:R:F422 R:R:R398 30.495912.83YesNo045
33R:R:R374 R:R:R398 30.9066.4NoNo085
34R:R:R374 R:R:Y352 30.664222.64NoNo087
35R:R:S351 R:R:Y352 30.4226.36NoNo097
36R:R:D349 R:R:S351 30.17944.42NoNo089
37R:R:D349 R:R:T325 29.69297.23NoNo088
38R:R:T325 R:R:V302 29.18139.52NoNo1987
39R:R:V302 R:R:Y280 28.9610.09NoNo077
40R:R:H256 R:R:Y280 24.72244.36YesNo097
41R:R:H256 R:R:N233 22.895.1YesYes399
42R:R:H209 R:R:N233 11.3633.83YesYes399
43R:R:H207 R:R:H209 10.90837.17YesYes399
44R:R:H207 R:R:T183 20.24014.11YesNo399
45R:R:T183 R:R:W159 16.41734.85NoYes399
46R:R:I64 R:R:L88 33.21865.71YesNo069
47R:R:L86 R:R:L88 11.43498.3YesNo089
48R:R:L112 R:R:L88 22.94654.15NoNo099
49R:R:L110 R:R:L112 11.79394.15YesNo099
50R:R:L112 R:R:L136 11.94954.15NoNo099
51R:R:L134 R:R:L136 13.17895.54NoNo099
52R:R:I331 R:R:I355 50.27422.94NoYes488
53R:R:I355 R:R:N375 52.06629.91YesYes489
54R:R:D231 R:R:N233 11.091212.12NoYes399
55R:R:D231 R:R:H207 10.832910.08NoYes399
56R:R:I64 R:R:N67 35.50425.66YesYes069
57R:R:I69 R:R:N67 31.10415.66NoYes079
58R:R:I69 R:R:N91 29.62737.08NoNo079
59R:R:N115 R:R:N91 28.154.09NoNo099
60R:R:L93 R:R:N115 23.71556.87NoNo099
61R:R:I96 R:R:L93 20.7544.28YesNo1599
62R:R:A100 R:R:I96 17.79691.62NoYes089
63R:R:A100 R:R:H97 16.31611.46NoYes088
64R:R:L237 R:R:P241 10.57044.93YesNo089
65R:R:F240 R:R:P241 10.79585.78YesNo099
66R:R:L358 R:R:L372 10.33164.15NoNo088
67R:R:F361 R:R:L358 16.10883.65NoNo068
68R:R:Q469 R:R:V464 81.26287.16NoNo097
69R:R:I610 R:R:Q469 80.63674.12YesNo079
70R:R:I610 R:R:Y468 79.68224.84YesYes079
71R:R:F605 R:R:Y468 71.28184.13YesYes299
72R:R:D598 R:R:L535 11.50555.43NoYes299
73R:R:F605 R:R:L597 67.93863.65YesNo098
74R:R:L597 R:R:W612 67.793910.25NoYes089
75R:R:C693 R:R:W612 67.14345.22NoYes2999
76R:R:A621 R:R:C693 67.06393.61NoNo059
77R:R:A621 R:R:Y590 66.91662.67NoYes055
78R:R:L694 R:R:Y590 66.17364.69YesYes075
79R:R:F790 R:R:L694 58.97227.31YesYes057
80R:R:F790 R:R:M587 39.086111.2YesYes056
81R:R:A794 R:R:M587 33.08083.22NoYes086
82R:R:A794 R:R:N584 32.87644.69NoYes089
83R:R:N556 R:R:N584 11.7646.81YesYes099
84R:R:N584 R:R:N797 18.06126.81YesNo099
85R:R:N756 R:R:N797 10.47036.81NoNo099
86R:R:I753 R:R:V749 22.71183.07YesNo097
87R:R:R643 R:R:V749 22.04376.54YesNo087
88R:R:F790 R:R:S629 20.72335.28YesNo058
89R:R:E630 R:R:S629 20.49964.31YesNo088
90R:R:E630 R:R:N714 20.440811.83YesNo089
91R:R:F718 R:R:M721 18.35193.73YesYes067
92R:R:I753 R:R:M721 15.72345.83YesYes1497
93R:R:F760 R:R:N714 10.47618.46NoNo089
94R:R:R643 R:R:S646 12.5677.91YesNo086
95R:R:Q742 R:R:S646 11.87258.66NoNo076
96R:R:A647 R:R:Q742 11.17751.52NoNo047
97R:R:A647 R:R:L728 10.48211.58NoYes049
98R:R:F240 R:R:F268 13.29223.22YesYes599
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9KGK
Class A
SubFamily Orphan
Type Orphan
SubType LGR4
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.63
Date 2025-07-16
D.O.I. To be published
Net Summary
Imin 2.94
Number of Linked Nodes 699
Number of Links 813
Number of Hubs 121
Number of Links mediated by Hubs 427
Number of Communities 31
Number of Nodes involved in Communities 172
Number of Links involved in Communities 219
Path Summary
Number Of Nodes in MetaPath 99
Number Of Links MetaPath 98
Number of Shortest Paths 741969
Length Of Smallest Path 3
Average Path Length 33.5216
Length of Longest Path 68
Minimum Path Strength 1.26
Average Path Strength 5.5517
Maximum Path Strength 23.84
Minimum Path Correlation 0.77
Average Path Correlation 0.986219
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 7.40741
Average % Of Corr. Nodes 53.5435
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.7763
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• multicellular organismal process   • tissue remodeling   • bone remodeling   • developmental process   • epithelium development   • cell population proliferation   • tube development   • morphogenesis of an epithelium   • tissue development   • renal system development   • epithelial cell proliferation involved in renal tubule morphogenesis   • tissue morphogenesis   • anatomical structure morphogenesis   • multicellular organism development   • tube morphogenesis   • anatomical structure development   • renal tubule development   • cellular process   • epithelial tube morphogenesis   • epithelial cell proliferation   • renal tubule morphogenesis   • system development   • cellular developmental process   • ossification   • cell differentiation   • osteoblast differentiation   • cellular response to stimulus   • positive regulation of response to biotic stimulus   • regulation of cellular process   • pattern recognition receptor signaling pathway   • response to stimulus   • toll-like receptor signaling pathway   • negative regulation of biological process   • regulation of signal transduction   • response to biotic stimulus   • cell communication   • immune response-activating signaling pathway   • positive regulation of immune response   • regulation of immune system process   • signal transduction   • positive regulation of immune system process   • innate immune response-activating signaling pathway   • regulation of biological process   • immune response   • response to other organism   • regulation of innate immune response   • response to external stimulus   • regulation of response to stimulus   • defense response to other organism   • regulation of pattern recognition receptor signaling pathway   • positive regulation of defense response   • activation of innate immune response   • regulation of immune response   • regulation of toll-like receptor signaling pathway   • activation of immune response   • regulation of defense response   • regulation of response to biotic stimulus   • biological process involved in interspecies interaction between organisms   • regulation of response to external stimulus   • signaling   • negative regulation of signaling   • positive regulation of biological process   • negative regulation of cell communication   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • immune response-regulating signaling pathway   • regulation of response to stress   • response to stress   • innate immune response   • negative regulation of cellular process   • response to external biotic stimulus   • regulation of signaling   • positive regulation of innate immune response   • defense response   • negative regulation of response to stimulus   • biological regulation   • defense response to symbiont   • negative regulation of signal transduction   • negative regulation of toll-like receptor signaling pathway   • negative regulation of immune system process   • immune system process   • regulation of cell communication   • spermatogenesis   • sexual reproduction   • reproductive process   • multicellular organismal reproductive process   • developmental process involved in reproduction   • male gamete generation   • gamete generation   • bone mineralization   • animal organ development   • biomineral tissue development   • mesonephric epithelium development   • kidney epithelium development   • branching morphogenesis of an epithelial tube   • nephron tubule morphogenesis   • regulation of kidney development   • regulation of branching involved in ureteric bud morphogenesis   • positive regulation of developmental process   • animal organ morphogenesis   • nephron development   • regulation of morphogenesis of a branching structure   • regulation of animal organ morphogenesis   • positive regulation of multicellular organismal process   • mesonephric tubule development   • regulation of developmental process   • nephron morphogenesis   • nephron epithelium morphogenesis   • nephron tubule development   • ureteric bud morphogenesis   • positive regulation of morphogenesis of an epithelium   • branching involved in ureteric bud morphogenesis   • regulation of morphogenesis of an epithelium   • regulation of multicellular organismal process   • regulation of anatomical structure morphogenesis   • nephron epithelium development   • ureteric bud development   • mesonephros development   • kidney morphogenesis   • morphogenesis of a branching structure   • positive regulation of branching involved in ureteric bud morphogenesis   • mesonephric tubule morphogenesis   • kidney development   • morphogenesis of a branching epithelium   • digestive system development   • digestive tract development   • epidermis development   • molting cycle process   • hair cycle   • skin development   • skin epidermis development   • hair follicle development   • molting cycle   • hair cycle process   • genitalia development   • reproductive system development   • sex differentiation   • male sex differentiation   • male genitalia development   • reproductive structure development   • multicellular organismal-level homeostasis   • homeostatic process   • homeostasis of number of cells   • intestinal stem cell homeostasis   • regulation of biosynthetic process   • rhythmic process   • circadian regulation of gene expression   • circadian rhythm   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • cytokine production   • regulation of cytokine production   • negative regulation of macromolecule metabolic process   • negative regulation of metabolic process   • negative regulation of cytokine production   • negative regulation of gene expression   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • negative regulation of multicellular organismal process   • metanephric tubule morphogenesis   • metanephric epithelium development   • metanephros development   • metanephros morphogenesis   • metanephric nephron tubule morphogenesis   • metanephric nephron development   • metanephric nephron epithelium development   • metanephric nephron tubule development   • metanephric nephron morphogenesis   • metanephric tubule development   • cell surface receptor signaling pathway   • Wnt signaling pathway   • positive regulation of cell communication   • positive regulation of signal transduction   • regulation of canonical Wnt signaling pathway   • canonical Wnt signaling pathway   • positive regulation of Wnt signaling pathway   • positive regulation of cellular process   • positive regulation of canonical Wnt signaling pathway   • regulation of Wnt signaling pathway   • positive regulation of signaling   • negative regulation of cold-induced thermogenesis   • adaptive thermogenesis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • metanephric glomerulus development   • glomerulus development   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .


This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XT9AOrphanOrphanLGR4Homo sapiens---3.12025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XUMAOrphanOrphanLGR4Homo sapiensR-spondin-2--2.92025-01-15doi.org/10.1016/j.molcel.2025.01.024
8XFPAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.212024-12-04doi.org/10.1038/s41467-024-55431-3
8XFSAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.22024-12-04doi.org/10.1038/s41467-024-55431-3
8XFTAOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.242024-12-04doi.org/10.1038/s41467-024-55431-3
8Y69AOrphanOrphanLGR4Homo sapiensR-spondin-2-ZNRF33.382024-12-04doi.org/10.1038/s41467-024-55431-3
8WVUAOrphanOrphanLGR4Homo sapiensR-spondin-1-RNF433.612024-10-30To be published
8WVVAOrphanOrphanLGR4Homo sapiens---3.352024-10-30To be published
8WVWAOrphanOrphanLGR4Homo sapiens---3.532024-10-30To be published
8WVXAOrphanOrphanLGR4Homo sapiensNorrin--3.322024-10-30To be published
8WVYAOrphanOrphanLGR4Homo sapiensNorrin--3.292024-10-30To be published
9KGKAOrphanOrphanLGR4Homo sapiens---2.632025-07-16To be published
9KHHAOrphanOrphanLGR4Homo sapiensNorrin--3.652025-07-16To be published
9S37AOrphanOrphanLGR4Homo sapiensNB21--3.942025-07-30To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9KGK.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.