Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.881821110
2R:R:R73 4.0125405
3R:R:M74 5.595408
4R:R:F76 6.725444
5R:R:F77 6.294548
6R:R:N80 6.346529
7R:R:L86 2.0975407
8R:R:Y92 8.196506
9R:R:S99 6.97415
10R:R:W111 11.998519
11R:R:R114 6.24167616
12R:R:E115 10.49415
13R:R:F119 7.2325415
14R:R:K150 3.85407
15R:R:I158 5.43407
16R:R:C161 3.475427
17R:R:W162 5.168529
18R:R:P172 6.195415
19R:R:W176 3.625404
20R:R:I188 5.016504
21R:R:L189 6.42515
22R:R:Y192 9.455413
23R:R:Y196 9.4225416
24R:R:Y215 5.088579
25R:R:Y219 4.37486
26R:R:W256 7.56667608
27R:R:L259 4.314516
28R:R:F260 12.105416
29R:R:F263 5.7425416
30R:R:D266 7.9404
31R:R:C274 4.695402
32R:R:Y298 3.622569
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:E115 18.49447.16YesYes105
2R:R:E115 R:R:W111 16.971626.17YesYes159
3L:L:?1 R:R:L189 36.60144.99YesYes105
4R:R:I188 R:R:L189 24.51034.28YesYes045
5R:R:D266 R:R:I188 30.38649.8YesYes044
6R:R:D266 R:R:L277 21.10428.14YesNo042
7R:R:L277 R:R:T187 11.71448.84NoNo025
8L:L:?1 R:R:F263 20.93744.39YesYes106
9R:R:F263 R:R:I188 18.98416.28YesYes064
10L:L:?1 R:R:M118 20.91055.09YesNo106
11R:R:M118 R:R:Y92 21.86832.39NoYes066
12L:L:?1 R:R:L122 1007.48YesNo006
13R:R:L122 R:R:W256 99.82785.69NoYes068
14R:R:F252 R:R:W256 99.80099.02NoYes098
15R:R:F252 R:R:L129 98.29422.44NoNo099
16R:R:L129 R:R:Y298 99.53723.52NoYes099
17R:R:L81 R:R:Y298 38.56542.34NoYes099
18R:R:L81 R:R:P295 37.33323.28NoNo099
19R:R:D85 R:R:P295 24.98394.83NoNo399
20R:R:D85 R:R:S291 24.41898.83NoNo099
21R:R:I53 R:R:S291 23.06824.64NoNo079
22R:R:A292 R:R:I53 14.73851.62NoNo067
23R:R:N57 R:R:P295 11.10096.52NoNo399
24R:R:L86 R:R:N57 10.42831.37YesNo079
25R:R:I132 R:R:Y298 79.78372.42NoYes099
26R:R:I132 R:R:R136 79.00342.51NoNo099
27R:R:M74 R:R:R136 61.25167.44YesNo089
28R:R:H71 R:R:M74 14.67395.25NoYes088
29R:R:H71 R:R:Y75 11.811210.89NoNo089
30R:R:E135 R:R:M74 47.43336.77NoYes098
31R:R:E135 R:R:R73 13.1354.65NoYes095
32R:R:E135 R:R:F77 33.37828.16NoYes098
33R:R:F76 R:R:F77 28.470712.86YesYes448
34R:R:F76 R:R:I158 25.65656.28YesYes047
35R:R:I158 R:R:N80 21.62619.91YesYes079
36R:R:M98 R:R:R114 15.26588.69NoYes046
37R:R:L106 R:R:M98 12.74758.48NoNo064
38R:R:L106 R:R:V110 10.218510.43NoNo066
39L:L:?1 R:R:F119 20.496120.85YesYes105
40R:R:F119 R:R:Y192 18.83884.13YesYes153
41R:R:Y192 R:R:Y196 27.49148.94YesYes136
42R:R:L168 R:R:Y196 24.89248.21NoYes056
43R:R:F199 R:R:L168 23.17052.44NoNo045
44R:R:F199 R:R:I203 21.30332.51NoNo045
45R:R:I203 R:R:I207 19.41991.47NoNo057
46R:R:L189 R:R:Y192 24.677116.41YesYes153
47R:R:I207 R:R:L130 17.52584.28NoNo077
48R:R:L130 R:R:T210 15.6212.95NoNo076
49R:R:R136 R:R:Y215 26.646610.29NoYes099
50R:R:K150 R:R:R73 10.20776.19YesYes075
51R:R:P172 R:R:Y192 14.50718.34YesYes153
52R:R:V246 R:R:Y215 21.30332.52NoYes069
53R:R:L242 R:R:V246 19.92042.98NoNo076
54R:R:L242 R:R:V222 13.16194.47NoNo078
55R:R:S238 R:R:V222 10.41761.62NoNo078
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:N95 7.42 1 Yes No 0 6 0 1
L:L:?1 R:R:S99 16.23 1 Yes Yes 0 5 0 1
L:L:?1 R:R:E115 7.16 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M118 5.09 1 Yes No 0 6 0 1
L:L:?1 R:R:F119 20.85 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L122 7.48 1 Yes No 0 6 0 1
L:L:?1 R:R:L189 4.99 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L259 3.74 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F260 5.49 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F263 4.39 1 Yes Yes 0 6 0 1
L:L:?1 R:R:I284 3.86 1 Yes No 0 5 0 1
R:R:N95 R:R:R114 9.64 1 No Yes 6 6 1 2
R:R:M118 R:R:N95 2.8 1 No No 6 6 1 1
R:R:S99 R:R:T103 3.2 1 Yes No 5 5 1 2
R:R:R114 R:R:S99 6.59 1 Yes Yes 6 5 2 1
R:R:R114 R:R:T103 3.88 1 Yes No 6 5 2 2
R:R:R114 R:R:W111 4 1 Yes Yes 6 9 2 2
R:R:E115 R:R:W111 26.17 1 Yes Yes 5 9 1 2
R:R:E115 R:R:R114 4.65 1 Yes Yes 5 6 1 2
R:R:E115 R:R:L189 3.98 1 Yes Yes 5 5 1 1
R:R:F119 R:R:L189 2.44 1 Yes Yes 5 5 1 1
R:R:F119 R:R:Y192 4.13 1 Yes Yes 5 3 1 2
R:R:L122 R:R:W256 5.69 0 No Yes 6 8 1 2
R:R:I188 R:R:L189 4.28 0 Yes Yes 4 5 2 1
R:R:F263 R:R:I188 6.28 1 Yes Yes 6 4 1 2
R:R:L189 R:R:Y192 16.41 1 Yes Yes 5 3 1 2
R:R:F263 R:R:I197 3.77 1 Yes No 6 6 1 2
R:R:F260 R:R:I201 3.77 1 Yes No 6 4 1 2
R:R:F204 R:R:W256 4.01 0 No Yes 7 8 2 2
R:R:F204 R:R:F260 34.29 0 No Yes 7 6 2 1
R:R:F260 R:R:L259 4.87 1 Yes Yes 6 6 1 1
R:R:F263 R:R:L259 8.53 1 Yes Yes 6 6 1 1
R:R:I284 R:R:L259 2.85 1 No Yes 5 6 1 1
R:R:M118 R:R:Y92 2.39 1 No Yes 6 6 1 2
R:R:G100 R:R:S99 1.86 0 No Yes 6 5 2 1
R:R:A287 R:R:L259 1.58 0 No Yes 7 6 2 1
R:R:F119 R:R:G116 1.51 1 Yes No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9L74_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.42
Number of Linked Nodes 240
Number of Links 259
Number of Hubs 32
Number of Links mediated by Hubs 119
Number of Communities 8
Number of Nodes involved in Communities 43
Number of Links involved in Communities 58
Path Summary
Number Of Nodes in MetaPath 56
Number Of Links MetaPath 55
Number of Shortest Paths 33048
Length Of Smallest Path 3
Average Path Length 13.9687
Length of Longest Path 31
Minimum Path Strength 1.305
Average Path Strength 6.04122
Maximum Path Strength 20.21
Minimum Path Correlation 0.7
Average Path Correlation 0.925535
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 47.2068
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.16
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell population proliferation   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • multicellular organismal process   • regulation of establishment of endothelial barrier   • cellular developmental process   • regulation of developmental process   • endothelium development   • negative regulation of biological process   • cell development   • regulation of cell differentiation   • negative regulation of endothelial cell development   • epithelial cell differentiation   • regulation of cell development   • regulation of epithelial cell differentiation   • endothelial cell development   • multicellular organism development   • cell differentiation   • regulation of endothelial cell development   • anatomical structure development   • negative regulation of cellular process   • regulation of multicellular organismal process   • negative regulation of cell differentiation   • developmental process   • epithelium development   • regulation of multicellular organismal development   • negative regulation of epithelial cell differentiation   • endothelial cell differentiation   • regulation of endothelial cell differentiation   • negative regulation of developmental process   • negative regulation of endothelial cell differentiation   • tissue development   • negative regulation of cell development   • epithelial cell development   • establishment of endothelial barrier   • negative regulation of establishment of endothelial barrier   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • defense response   • response to stress   • inflammatory response   • regulation of biosynthetic process   • regulation of interleukin-1 production   • interleukin-1 production   • regulation of macromolecule metabolic process   • gene expression   • regulation of interleukin-1 beta production   • macromolecule biosynthetic process   • regulation of gene expression   • biosynthetic process   • interleukin-1 beta production   • regulation of cytokine production   • cytokine production   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • cell surface receptor signaling pathway   • Notch signaling pathway   • anatomical structure morphogenesis   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • presynapse   • synapse   • cell junction   • intracellular anatomical structure   • cytoplasm   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • camera-type eye development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ99500
Sequence
>9L74_nogp_Chain_R
TLREHYQYV GTVLFLVIC SFIVLENLM VLIAIWKNN KFHNRMYFF 
IGNLALCDL LAGIAYKVN ILMSGKKTF SLSPTVWFL REGSMFVAL 
GASTCSLLA IAIERHLTM IKMRPYDAN KRHRVFLLI GMCWLIAFT 
LGALPILGW NCLHNLPDC STILPLYSK KYIAFCISI FTAILVTIV 
ILYARIYFL VKSSSRKVA NHNNSERSM ALLRTVVIV VSVFIACWS 
PLFILFLID VACVQACPI LFKAQWFIV LAVLNSAMN PVIYTLAS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7C4SALipidLysophospholipidS1P3Homo sapiensS1P--3.22021-06-09doi.org/10.1126/sciadv.abf5325
7EW2ALipidLysophospholipidS1P3Homo sapiensFTY720-P-Gi1/β1/γ23.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW2 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensFTY720-P-3.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW3ALipidLysophospholipidS1P3Homo sapiensS1P-Gi1/β1/γ23.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW3 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P-3.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW4ALipidLysophospholipidS1P3Homo sapiensCYM-5541-Gi1/β1/γ23.22021-09-29doi.org/10.1038/s41422-021-00567-w
7EW4 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensCYM-5541-3.22021-09-29doi.org/10.1038/s41422-021-00567-w
9L74ALipidLysophospholipidS1P3Homo sapiensS1P d16:1-chim(NtGi2L-Gs-CtGq)/β1/γ23.732025-11-2610.1073/pnas.2507421122
9L74 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P d16:1-3.732025-11-2610.1073/pnas.2507421122
9WP9ALipidLysophospholipidS1P3Homo sapiensS1P-chim(NtGi2L-Gs-CtGq)/β1/γ23.252025-11-2610.1073/pnas.2507421122
9WP9 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P-3.252025-11-2610.1073/pnas.2507421122




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9L74_nogp.zip



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