Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.6121510
2R:R:H21 5.005407
3R:R:Y22 7.69833619
4R:R:F46 8.218517
5R:R:M74 4.47408
6R:R:F77 4.97667608
7R:R:Y92 4.99286716
8R:R:M98 4.0125404
9R:R:S99 7.2125415
10R:R:W111 11.022519
11R:R:F112 6.54616
12R:R:R114 7.94167616
13R:R:E115 13.4525415
14R:R:M118 5.3925416
15R:R:F119 7.3175415
16R:R:L129 5.4425419
17R:R:L130 4.6725407
18R:R:E135 6.03409
19R:R:H137 6.464508
20R:R:W162 6.09539
21R:R:I173 3.1275405
22R:R:L189 4.916515
23R:R:Y192 5.745613
24R:R:Y196 6.415616
25R:R:I197 5.0475406
26R:R:I201 3.405404
27R:R:Y219 4.44406
28R:R:M239 7.9225405
29R:R:W256 6.44857718
30R:R:F260 9.98516
31R:R:F263 7.964516
32R:R:C274 3.14422
33R:R:N294 4.7775419
34R:R:P295 4.445409
35R:R:Y298 5.352519
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L106 R:R:R114 11.62726.07NoYes066
2L:L:?1 R:R:E115 21.714913.05YesYes105
3L:L:?1 R:R:Y22 31.41177.99YesYes109
4R:R:W111 R:R:Y22 15.70477.72YesYes199
5R:R:L191 R:R:W111 15.589911.39NoYes149
6R:R:H21 R:R:L191 14.8196.43YesNo074
7R:R:E115 R:R:W111 13.805123.99YesYes159
8R:R:P190 R:R:Y22 17.577818.08NoYes049
9R:R:P190 R:R:V25 15.18573.53NoNo046
10R:R:T187 R:R:V25 11.93434.76NoNo056
11L:L:?1 R:R:M118 15.21448.57YesYes106
12R:R:M118 R:R:Y92 13.017.18YesYes166
13R:R:F46 R:R:Y92 12.84434.13YesYes176
14L:L:?1 R:R:I284 13.58437.57YesNo005
15R:R:I284 R:R:Y92 12.76923.63NoYes056
16L:L:?1 R:R:W256 92.12785.18YesYes108
17R:R:F252 R:R:W256 97.51298.02NoYes198
18R:R:F252 R:R:L129 1004.87NoYes199
19R:R:N294 R:R:P295 15.05313.26YesYes099
20R:R:L129 R:R:Y298 90.45135.86YesYes199
21R:R:I132 R:R:Y298 66.16537.25NoYes099
22R:R:F77 R:R:I132 36.71063.77YesNo089
23R:R:I132 R:R:M74 29.9875.83NoYes098
24R:R:E135 R:R:M74 57.15335.41YesYes098
25R:R:R136 R:R:Y298 31.83584.12NoYes099
26R:R:M74 R:R:R136 30.37353.72YesNo089
27R:R:E135 R:R:F77 31.86677YesYes098
28R:R:M98 R:R:R114 11.62727.44YesYes046
29R:R:F112 R:R:W111 12.89735.01YesYes169
30R:R:F112 R:R:I173 14.12323.77YesYes065
31L:L:?1 R:R:F119 16.301110.15YesYes105
32R:R:F112 R:R:Y192 13.00336.19YesYes163
33L:L:?1 R:R:L189 10.41246.29YesYes105
34R:R:E135 R:R:R153 83.57964.65YesNo095
35R:R:L138 R:R:R153 71.3567.29NoNo055
36R:R:I134 R:R:L138 15.71582.85NoNo075
37R:R:I134 R:R:L130 10.91162.85NoYes077
38R:R:H137 R:R:L138 54.85833.86YesNo085
39R:R:H137 R:R:I141 23.802313.26YesNo086
40R:R:K150 R:R:R153 12.19937.43NoNo075
41R:R:A148 R:R:K150 10.43453.21NoNo057
42R:R:H137 R:R:I218 23.7892.65YesNo088
43R:R:I218 R:R:L242 22.30691.43NoNo087
44R:R:L242 R:R:Y219 20.82923.52NoYes076
45R:R:M239 R:R:Y219 12.19495.99YesYes056
46R:R:I141 R:R:L221 22.07051.43NoNo065
47R:R:L221 R:R:V222 20.59951.49NoNo058
48R:R:M239 R:R:V222 12.20373.04YesNo058
49R:R:K223 R:R:M239 10.36388.64NoYes055
50R:R:M239 R:R:N234 10.613414.02YesNo054
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y22 7.99 1 Yes Yes 0 9 0 1
L:L:?1 R:R:N95 10.4 1 Yes No 0 6 0 1
L:L:?1 R:R:S99 15.93 1 Yes Yes 0 5 0 1
L:L:?1 R:R:T103 5.58 1 Yes No 0 5 0 1
L:L:?1 R:R:E115 13.05 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M118 8.57 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F119 10.15 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L122 5.24 1 Yes No 0 6 0 1
L:L:?1 R:R:G123 3.89 1 Yes No 0 5 0 1
L:L:?1 R:R:L189 6.29 1 Yes Yes 0 5 0 1
L:L:?1 R:R:W256 5.18 1 Yes Yes 0 8 0 1
L:L:?1 R:R:L259 4.19 1 Yes No 0 6 0 1
L:L:?1 R:R:F260 6.46 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F263 3.69 1 Yes Yes 0 6 0 1
L:L:?1 R:R:I284 7.57 1 Yes No 0 5 0 1
R:R:T103 R:R:Y22 4.99 1 No Yes 5 9 1 1
R:R:F104 R:R:Y22 5.16 0 No Yes 7 9 2 1
R:R:W111 R:R:Y22 7.72 1 Yes Yes 9 9 2 1
R:R:P190 R:R:Y22 18.08 0 No Yes 4 9 2 1
R:R:M118 R:R:Y92 7.18 1 Yes Yes 6 6 1 2
R:R:I284 R:R:Y92 3.63 0 No Yes 5 6 1 2
R:R:N95 R:R:S99 4.47 1 No Yes 6 5 1 1
R:R:M118 R:R:N95 4.21 1 Yes No 6 6 1 1
R:R:R114 R:R:S99 6.59 1 Yes Yes 6 5 2 1
R:R:R114 R:R:T103 7.76 1 Yes No 6 5 2 1
R:R:R114 R:R:W111 7 1 Yes Yes 6 9 2 2
R:R:E115 R:R:W111 23.99 1 Yes Yes 5 9 1 2
R:R:E115 R:R:R114 12.79 1 Yes Yes 5 6 1 2
R:R:E115 R:R:L189 3.98 1 Yes Yes 5 5 1 1
R:R:F119 R:R:L189 3.65 1 Yes Yes 5 5 1 1
R:R:F119 R:R:Y192 7.22 1 Yes Yes 5 3 1 2
R:R:F119 R:R:Y196 8.25 1 Yes Yes 5 6 1 2
R:R:L122 R:R:W256 5.69 1 No Yes 6 8 1 1
R:R:T126 R:R:W256 6.06 0 No Yes 7 8 2 1
R:R:I188 R:R:L189 7.14 0 No Yes 4 5 2 1
R:R:F263 R:R:I188 7.54 1 Yes No 6 4 1 2
R:R:L189 R:R:Y192 3.52 1 Yes Yes 5 3 1 2
R:R:Y192 R:R:Y196 4.96 1 Yes Yes 3 6 2 2
R:R:F263 R:R:I197 12.56 1 Yes Yes 6 6 1 2
R:R:F260 R:R:I201 6.28 1 Yes Yes 6 4 1 2
R:R:F204 R:R:W256 5.01 1 No Yes 7 8 2 1
R:R:F204 R:R:F260 24.65 1 No Yes 7 6 2 1
R:R:F252 R:R:W256 8.02 1 No Yes 9 8 2 1
R:R:F252 R:R:N290 10.87 1 No No 9 9 2 2
R:R:F260 R:R:W256 5.01 1 Yes Yes 6 8 1 1
R:R:N290 R:R:W256 10.17 1 No Yes 9 8 2 1
R:R:F263 R:R:L259 8.53 1 Yes No 6 6 1 1
R:R:F260 R:R:F263 7.5 1 Yes Yes 6 6 1 1
R:R:Q23 R:R:Y22 2.25 0 No Yes 7 9 2 1
R:R:G100 R:R:S99 1.86 0 No Yes 6 5 2 1
R:R:A91 R:R:M118 1.61 0 No Yes 5 6 2 1
R:R:A88 R:R:L122 1.58 0 No No 8 6 2 1
R:R:A287 R:R:L259 1.58 0 No No 7 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9WP9_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.26
Number of Linked Nodes 249
Number of Links 279
Number of Hubs 35
Number of Links mediated by Hubs 140
Number of Communities 3
Number of Nodes involved in Communities 42
Number of Links involved in Communities 66
Path Summary
Number Of Nodes in MetaPath 51
Number Of Links MetaPath 50
Number of Shortest Paths 73935
Length Of Smallest Path 3
Average Path Length 13.5555
Length of Longest Path 26
Minimum Path Strength 1.46
Average Path Strength 5.97096
Maximum Path Strength 18.52
Minimum Path Correlation 0.7
Average Path Correlation 0.916084
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 41.3941
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.0444
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell population proliferation   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • multicellular organismal process   • regulation of establishment of endothelial barrier   • cellular developmental process   • regulation of developmental process   • endothelium development   • negative regulation of biological process   • cell development   • regulation of cell differentiation   • negative regulation of endothelial cell development   • epithelial cell differentiation   • regulation of cell development   • regulation of epithelial cell differentiation   • endothelial cell development   • multicellular organism development   • cell differentiation   • regulation of endothelial cell development   • anatomical structure development   • negative regulation of cellular process   • regulation of multicellular organismal process   • negative regulation of cell differentiation   • developmental process   • epithelium development   • regulation of multicellular organismal development   • negative regulation of epithelial cell differentiation   • endothelial cell differentiation   • regulation of endothelial cell differentiation   • negative regulation of developmental process   • negative regulation of endothelial cell differentiation   • tissue development   • negative regulation of cell development   • epithelial cell development   • establishment of endothelial barrier   • negative regulation of establishment of endothelial barrier   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • defense response   • response to stress   • inflammatory response   • regulation of biosynthetic process   • regulation of interleukin-1 production   • interleukin-1 production   • regulation of macromolecule metabolic process   • gene expression   • regulation of interleukin-1 beta production   • macromolecule biosynthetic process   • regulation of gene expression   • biosynthetic process   • interleukin-1 beta production   • regulation of cytokine production   • cytokine production   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • cell surface receptor signaling pathway   • Notch signaling pathway   • anatomical structure morphogenesis   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • presynapse   • synapse   • cell junction   • intracellular anatomical structure   • cytoplasm   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • camera-type eye development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeS1P
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeS1P
Name(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate
Synonymssphingosine 1-phosphate
Identifier
FormulaC18 H38 N O5 P
Molecular Weight379.472
SMILES
PubChem5283560
Formal Charge0
Total Atoms63
Total Chiral Atoms2
Total Bonds62
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ99500
Sequence
>9WP9_nogp_Chain_R
TLREHYQYV GKTLTTVLF LVICSFIVL ENLMVLIAI WKNNKMYFF 
IGNLALCDL LAGIAYKVN ILMSGKKTF SLSPTVWFL REGSMFVAL 
GASTCSLLA IAIERHLTM IKMRPYDAN KRHRVFLLI GMCWLIAFT 
LGALPILGW NCLHNLPDC STILPLYSK KYIAFCISI FTAILVTIV 
ILYARIYFL VKSSSRKVA NHNNSERSM ALLRTVVIV VSVFIACWS 
PLFILFLID VACRVQACP ILFKAQWFI VLAVLNSAM NPVIYTLAS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7C4SALipidLysophospholipidS1P3Homo sapiensS1P--3.22021-06-09doi.org/10.1126/sciadv.abf5325
7EW2ALipidLysophospholipidS1P3Homo sapiensFTY720-P-Gi1/β1/γ23.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW2 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensFTY720-P-3.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW3ALipidLysophospholipidS1P3Homo sapiensS1P-Gi1/β1/γ23.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW3 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P-3.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW4ALipidLysophospholipidS1P3Homo sapiensCYM-5541-Gi1/β1/γ23.22021-09-29doi.org/10.1038/s41422-021-00567-w
7EW4 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensCYM-5541-3.22021-09-29doi.org/10.1038/s41422-021-00567-w
9L74ALipidLysophospholipidS1P3Homo sapiensS1P d16:1-chim(NtGi2L-Gs-CtGq)/β1/γ23.732025-11-2610.1073/pnas.2507421122
9L74 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P d16:1-3.732025-11-2610.1073/pnas.2507421122
9WP9ALipidLysophospholipidS1P3Homo sapiensS1P-chim(NtGi2L-Gs-CtGq)/β1/γ23.252025-11-2610.1073/pnas.2507421122
9WP9 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P-3.252025-11-2610.1073/pnas.2507421122




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