Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.2462810
2L:L:H2 7.28333610
3L:L:W3 10.0017610
4L:L:Y5 8.0125400
5R:R:R38 10.045415
6R:R:V39 4.5425406
7R:R:F46 5.2975407
8R:R:N53 6.3425409
9R:R:F56 5.8275407
10R:R:N87 5.56409
11R:R:E90 5.78436
12R:R:D98 7.19416
13R:R:W101 15.625425
14R:R:N102 9.705415
15R:R:W107 11.902529
16R:R:F123 6.73505
17R:R:T144 2.9025407
18R:R:R145 3.6575405
19R:R:Q174 8.2825424
20R:R:I177 7.5725454
21R:R:F178 8.81425
22R:R:C196 5.1275429
23R:R:F202 6.6575405
24R:R:L219 5414
25R:R:I234 4.1475408
26R:R:I258 4.825404
27R:R:F272 8.185408
28R:R:Y283 8.54167616
29R:R:Y284 8.72667617
30R:R:Y290 4.3425404
31R:R:W291 11.9825404
32R:R:H306 6.10857715
33R:R:F307 5.072515
34R:R:F309 8.598515
35R:R:Y323 7.355409
36R:R:F326 5.97408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:H2 53.44175.5YesYes100
2L:L:H2 R:R:T215 34.56759.58YesNo105
3L:L:H2 R:R:L219 34.10233.86YesYes104
4L:L:H2 R:R:Y284 15.45767.62YesYes107
5L:L:?1 R:R:Y283 14.30117.56YesYes106
6R:R:Y283 R:R:Y284 31.0196.95YesYes167
7R:R:T215 R:R:Y126 33.924.99NoNo156
8R:R:L122 R:R:Y126 10017.58NoNo056
9R:R:L122 R:R:Q174 75.66637.99NoYes054
10R:R:F178 R:R:Q174 38.945814.05YesYes254
11R:R:F178 R:R:T198 20.43635.19YesNo058
12R:R:I177 R:R:T198 18.95274.56YesNo048
13R:R:I177 R:R:S201 30.893310.84YesNo543
14R:R:R179 R:R:S201 27.86025.27NoNo053
15R:R:I181 R:R:R179 12.44348.77NoNo025
16R:R:L219 R:R:Y126 67.29327.03YesNo146
17R:R:Q174 R:R:Y211 34.94156.76YesNo045
18R:R:F202 R:R:Y211 30.59476.19YesNo055
19R:R:F202 R:R:I177 18.801910.05YesYes054
20L:L:?1 R:R:F309 16.098815.64YesYes105
21L:L:Y5 R:R:F309 40.69658.25YesYes005
22L:L:Y5 R:R:Y290 13.17895.96YesYes004
23L:L:Y5 R:R:N305 25.270312.79YesNo003
24L:L:?1 R:R:D98 52.18444.36YesYes106
25R:R:D98 R:R:R38 43.31475.96YesYes165
26R:R:H306 R:R:R38 21.973211.28YesYes155
27L:L:R8 R:R:P29 24.4948.65NoNo006
28R:R:L28 R:R:P29 21.79724.93NoNo046
29R:R:F193 R:R:L28 19.094218.27NoNo044
30L:L:R8 R:R:N305 22.57359.64NoNo003
31R:R:F193 R:R:Q106 13.669216.4NoNo045
32R:R:F307 R:R:I37 10.6335.02YesNo055
33R:R:L310 R:R:R38 11.73314.86NoYes055
34R:R:W280 R:R:Y284 66.08628.68NoYes087
35R:R:N315 R:R:W280 66.84379.04NoNo098
36R:R:D319 R:R:N315 67.623210.77NoNo099
37R:R:D319 R:R:N87 24.110510.77NoYes099
38R:R:N53 R:R:N87 23.51024.09YesYes099
39R:R:N53 R:R:T84 17.06064.39YesNo099
40R:R:F56 R:R:T84 11.51317.78YesNo079
41R:R:D319 R:R:Y323 52.3734.6NoYes099
42R:R:F272 R:R:Y323 53.180816.5YesYes089
43R:R:F272 R:R:M227 46.26924.98YesNo088
44R:R:M227 R:R:S136 44.86427.67NoNo089
45R:R:C230 R:R:S136 44.11623.44NoNo059
46R:R:C230 R:R:L137 22.55783.17NoNo056
47R:R:L137 R:R:M159 14.06842.83NoNo065
48R:R:A171 R:R:L122 28.83773.15NoNo065
49R:R:A171 R:R:Y119 27.28824NoNo066
50R:R:F123 R:R:Y119 24.17027.22YesNo056
51R:R:C196 R:R:F178 18.72332.79YesYes295
52R:R:C196 R:R:W101 10.86255.22YesYes295
53R:R:E111 R:R:R179 12.44348.14NoNo045
54R:R:F123 R:R:S167 11.44717.93YesNo058
55R:R:C230 R:R:S140 24.39026.89NoNo057
56R:R:I234 R:R:S140 23.4853.1YesNo087
57R:R:I234 R:R:T144 17.97841.52YesYes087
58R:R:F309 R:R:L286 17.013510.96YesNo054
59R:R:F308 R:R:L286 14.813314.61NoNo064
60R:R:F308 R:R:P282 11.60424.33NoNo069
61R:R:P282 R:R:T281 10.87193.5NoNo095
62L:L:H2 L:L:W3 15.17799.52YesYes100
63L:L:W3 R:R:F309 14.10934.01YesYes105
64L:L:H2 R:R:Y283 14.43937.62YesYes106
65R:R:F309 R:R:Y283 28.85344.13YesYes156
66R:R:L219 R:R:Y284 34.22814.69YesYes147
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D98 4.36 1 Yes Yes 0 6 0 1
L:L:?1 R:R:K121 6.03 1 Yes No 0 7 0 1
L:L:?1 R:R:Y283 17.56 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F309 15.64 1 Yes Yes 0 5 0 1
L:L:H2 R:R:T215 9.58 1 Yes No 0 5 0 1
L:L:H2 R:R:L219 3.86 1 Yes Yes 0 4 0 1
L:L:H2 R:R:Y283 7.62 1 Yes Yes 0 6 0 1
L:L:H2 R:R:Y284 7.62 1 Yes Yes 0 7 0 1
L:L:W3 R:R:Y283 9.65 1 Yes Yes 0 6 0 1
L:L:W3 R:R:G287 8.44 1 Yes No 0 5 0 1
L:L:W3 R:R:W291 14.99 1 Yes Yes 0 4 0 1
L:L:W3 R:R:F309 4.01 1 Yes Yes 0 5 0 1
L:L:S4 R:R:V197 6.46 0 No No 0 5 0 1
L:L:Y5 R:R:Y290 5.96 0 Yes Yes 0 4 0 1
L:L:Y5 R:R:V297 5.05 0 Yes No 0 1 0 1
L:L:Y5 R:R:N305 12.79 0 Yes No 0 3 0 1
L:L:Y5 R:R:F309 8.25 0 Yes Yes 0 5 0 1
L:L:L7 R:R:F193 3.65 0 No No 0 4 0 1
L:L:R8 R:R:P29 8.65 0 No No 0 6 0 1
L:L:R8 R:R:N305 9.64 0 No No 0 3 0 1
L:L:R8 R:R:H306 4.51 0 No Yes 0 5 0 1
L:L:P9 R:R:N102 11.4 0 No Yes 0 5 0 1
L:L:?11 R:R:D98 10.08 1 No Yes 0 6 0 1
R:R:L28 R:R:P29 4.93 0 No No 4 6 2 1
R:R:F193 R:R:L28 18.27 0 No No 4 4 1 2
R:R:H306 R:R:S34 6.97 1 Yes No 5 4 1 2
R:R:F307 R:R:S34 6.61 1 Yes No 5 4 2 2
R:R:G35 R:R:H306 6.35 0 No Yes 5 5 2 1
R:R:D98 R:R:R38 5.96 1 Yes Yes 6 5 1 2
R:R:N102 R:R:R38 18.08 1 Yes Yes 5 5 1 2
R:R:H306 R:R:R38 11.28 1 Yes Yes 5 5 1 2
R:R:K121 R:R:V94 7.59 0 No No 7 6 1 2
R:R:D98 R:R:F313 8.36 1 Yes No 6 7 1 2
R:R:H306 R:R:N102 6.38 1 Yes Yes 5 5 1 1
R:R:F193 R:R:Q106 16.4 0 No No 4 5 1 2
R:R:K121 R:R:M125 4.32 0 No No 7 7 1 2
R:R:T215 R:R:Y126 4.99 1 No No 5 6 1 2
R:R:L219 R:R:Y126 7.03 1 Yes No 4 6 1 2
R:R:I181 R:R:V197 4.61 0 No No 2 5 2 1
R:R:H199 R:R:V197 15.22 0 No No 4 5 2 1
R:R:N212 R:R:W291 27.12 0 No Yes 5 4 2 1
R:R:L219 R:R:T215 4.42 1 Yes No 4 5 1 1
R:R:F216 R:R:Y284 19.6 0 No Yes 5 7 2 1
R:R:L219 R:R:Y284 4.69 1 Yes Yes 4 7 1 1
R:R:W280 R:R:Y284 8.68 0 No Yes 8 7 2 1
R:R:Y283 R:R:Y284 6.95 1 Yes Yes 6 7 1 1
R:R:F309 R:R:Y283 4.13 1 Yes Yes 5 6 1 1
R:R:A312 R:R:Y283 5.34 0 No Yes 7 6 2 1
R:R:W291 R:R:Y284 4.82 0 Yes Yes 4 7 1 1
R:R:F309 R:R:L286 10.96 1 Yes No 5 4 1 2
R:R:M296 R:R:Y290 7.18 0 No Yes 3 4 2 1
R:R:N305 R:R:S301 5.96 0 No No 3 4 1 2
R:R:F307 R:R:H306 4.53 1 Yes Yes 5 5 2 1
R:R:N102 R:R:V39 2.96 1 Yes Yes 5 6 1 2
R:R:P294 R:R:Y290 2.78 0 No Yes 3 4 2 1
R:R:H306 R:R:T32 2.74 1 Yes No 5 4 1 2
L:L:G6 R:R:Y290 1.45 0 No Yes 0 4 0 1
R:R:F292 R:R:W291 1 0 No Yes 5 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9U4W_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.5
Number of Linked Nodes 263
Number of Links 284
Number of Hubs 36
Number of Links mediated by Hubs 129
Number of Communities 5
Number of Nodes involved in Communities 34
Number of Links involved in Communities 49
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 60872
Length Of Smallest Path 3
Average Path Length 14.4973
Length of Longest Path 30
Minimum Path Strength 1.475
Average Path Strength 7.38342
Maximum Path Strength 24.805
Minimum Path Correlation 0.7
Average Path Correlation 0.925262
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 45.2516
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.54
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePCA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePCA
NamePidolic acid
SynonymsL-pyroglutamic acid
Identifier
FormulaC5 H7 N O3
Molecular Weight129.114
SMILES
PubChem7405
Formal Charge0
Total Atoms16
Total Chiral Atoms1
Total Bonds16
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?11
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49922
Sequence
>9U4W_nogp_Chain_R
NLPTLTLSG KIRVTVTFF LFLLSTAFN ASFLLKLQK SRMKVLLKH 
LTLANLLET LIVMPLDGM WNITVQWYA GEFLCKVLS YLKLFSMYA 
PAFMMVVIS LDRSLAITR PLAVKSNSR LGRFMIGLA WLLSSIFAG 
PQLYIFRMI HLGFSQCVT HGSFPQWWH QAFYNFFTF SCLFIIPLL 
IMLICNAKI MFTLTRVLQ NNIPRARLR TLKMTVAFA ASFIVCWTP 
YYVLGIWYW FDPEMVNRV SDPVNHFFF LFAFLNPCF DPLIYGYFS 
L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7BR3APeptideGonadotrophin Releasing HormoneGnRH1Homo sapiensElagolix--2.792020-10-07doi.org/10.1038/s41467-020-19109-w
9U4WAPeptideGonadotrophin Releasing HormoneGnRH1Sus scrofaGonadoliberin-1-chim(NtGi1L-Gs-CtGq)/β1/γ23.182025-06-11doi.org/10.1073/pnas.2500112122
9U4W (No Gprot) APeptideGonadotrophin Releasing HormoneGnRH1Sus scrofaGonadoliberin-1-3.182025-06-11doi.org/10.1073/pnas.2500112122
9U4YAPeptideGonadotrophin Releasing HormoneGnRH1Xenopus laevisGonadoliberin-1-chim(NtGi1L-Gs-CtGq)/β1/γ23.182025-06-11doi.org/10.1073/pnas.2500112122
9U4Y (No Gprot) APeptideGonadotrophin Releasing HormoneGnRH1Xenopus laevisGonadoliberin-1-3.182025-06-11doi.org/10.1073/pnas.2500112122




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Download 9U4W_nogp.zip



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