Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 14.7817610
2L:L:H2 8.226510
3L:L:W3 15.136510
4L:L:Y5 9.68500
5R:R:R56 10.088514
6R:R:N71 8.6325449
7R:R:Y82 5.19406
8R:R:H87 6.636507
9R:R:L91 5.525467
10R:R:F101 6.225406
11R:R:W113 15.7975435
12R:R:W119 10.628508
13R:R:R127 6.7475407
14R:R:Y138 7.2775476
15R:R:W176 4.4875409
16R:R:Y180 4.785403
17R:R:F190 7.904525
18R:R:T206 6.5775424
19R:R:F210 8.075424
20R:R:M221 5.784514
21R:R:Y239 7.4425409
22R:R:R241 6.0175404
23R:R:I269 4.345484
24R:R:Y294 11.996516
25R:R:Y295 6.92833617
26R:R:W302 13.4225414
27R:R:M307 7.4675403
28R:R:H319 5.074514
29R:R:F322 9.176515
30R:R:P333 4.435449
31R:R:I335 4.0875408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:H2 43.45095.5YesYes100
2L:L:H2 R:R:M137 14.66496.57YesNo007
3L:L:H2 R:R:Y295 34.34446.53YesYes107
4L:L:?1 R:R:Y294 31.01817.56YesYes106
5R:R:Y294 R:R:Y295 72.87366.95YesYes167
6L:L:W3 R:R:W302 10.694616.87YesYes104
7R:R:L227 R:R:M137 13.84225.65NoNo057
8R:R:L227 R:R:Y138 82.18049.38NoYes056
9R:R:L134 R:R:Y138 61.49228.21NoYes746
10R:R:L134 R:R:Q186 59.446311.98NoNo044
11R:R:F190 R:R:Q186 49.76047.03YesNo054
12R:R:F190 R:R:T206 26.32527.78YesYes254
13R:R:L227 R:R:Y295 71.90077.03NoYes057
14L:L:?1 R:R:F322 30.896320.85YesYes105
15L:L:Y5 R:R:F322 32.81355.16YesYes005
16L:L:Y5 R:R:M307 12.8558.38YesYes003
17R:R:F190 R:R:M130 10.587314.93YesNo055
18R:R:F322 R:R:R56 27.67015.34YesYes154
19R:R:L323 R:R:R56 13.455914.58NoYes054
20L:L:?1 R:R:K133 1004.53YesNo106
21R:R:K133 R:R:V106 99.71394.55NoNo067
22R:R:I102 R:R:V106 84.90597.68NoNo077
23R:R:I102 R:R:T329 30.5536.08NoNo078
24R:R:D99 R:R:T329 28.08510.12NoNo098
25R:R:D99 R:R:P333 15.35884.83NoYes499
26R:R:F70 R:R:P333 10.40852.89NoYes089
27R:R:L326 R:R:V106 24.71564.47NoNo077
28R:R:L326 R:R:M107 22.02599.9NoNo077
29R:R:F64 R:R:M107 16.60354.98NoNo067
30R:R:F64 R:R:T103 11.12385.19NoNo066
31R:R:D99 R:R:N71 10.236812.12NoYes499
32R:R:F228 R:R:Y295 86.62995.16NoYes187
33R:R:F228 R:R:F287 91.29416.43NoNo089
34R:R:F287 R:R:M235 86.33666.22NoNo098
35R:R:M235 R:R:S148 83.46096.13NoNo089
36R:R:S148 R:R:Y239 73.51036.36NoYes099
37R:R:R151 R:R:Y239 30.7397.2NoYes099
38R:R:M279 R:R:R151 29.48716.2NoNo089
39R:R:L338 R:R:M279 56.79231.41NoNo078
40R:R:K81 R:R:L338 52.37141.41NoNo057
41R:R:K81 R:R:Y82 50.45433.58NoYes056
42R:R:I78 R:R:Y82 16.94683.63NoYes076
43R:R:I78 R:R:R89 11.44576.26NoNo078
44R:R:I283 R:R:Y239 30.9256.04NoYes089
45R:R:I283 R:R:M279 29.73035.83NoNo088
46R:R:I88 R:R:Y82 38.22888.46NoYes086
47R:R:A136 R:R:I102 67.51564.87NoNo087
48R:R:A136 R:R:F101 66.30668.32NoYes086
49R:R:F101 R:R:Y180 61.5285.16YesYes063
50R:R:W176 R:R:Y180 57.49344.82YesYes093
51R:R:N94 R:R:W176 53.45165.65NoYes099
52R:R:L172 R:R:N94 51.226813.73NoNo079
53R:R:L172 R:R:L91 45.90464.15NoYes077
54R:R:D150 R:R:L91 34.43025.43NoYes687
55R:R:D150 R:R:H87 34.73076.3NoYes087
56R:R:H87 R:R:I88 37.091413.26YesNo078
57R:R:H87 R:R:I161 14.44315.3YesNo075
58R:R:I147 R:R:L91 26.7834.28NoYes097
59R:R:I147 R:R:L95 24.73715.71NoNo099
60R:R:F101 R:R:L132 33.12114.87YesNo065
61R:R:C126 R:R:F190 21.25334.19NoYes295
62R:R:C126 R:R:W119 20.566610.45NoYes098
63R:R:L129 R:R:W119 20.71684.56NoYes058
64R:R:F131 R:R:L132 31.49016.09NoNo065
65R:R:F131 R:R:L187 28.39978.53NoNo065
66R:R:L187 R:R:R127 27.01192.43NoYes057
67R:R:C226 R:R:Y138 20.47364.03NoYes046
68R:R:C226 R:R:F222 17.59078.38NoNo044
69R:R:F222 R:R:L182 14.69353.65NoNo044
70R:R:L178 R:R:L182 11.7825.54NoNo034
71R:R:L95 R:R:Y336 20.28044.69NoNo099
72R:R:F287 R:R:P231 13.01242.89NoNo099
73R:R:C238 R:R:S148 30.12383.44NoNo079
74R:R:C238 R:R:Q152 25.24513.74NoNo078
75R:R:Q152 R:R:R241 22.77712.85NoYes084
76R:R:L156 R:R:R241 15.30157.29NoYes074
77R:R:L172 R:R:V146 14.37162.98NoNo076
78R:R:Q186 R:R:Y219 12.07535.64NoNo045
79R:R:F210 R:R:T206 17.11856.49YesYes244
80R:R:F210 R:R:Q215 12.33284.68YesNo043
81R:R:F322 R:R:L297 20.08017.31YesNo054
82R:R:L297 R:R:L321 16.44616.92NoNo046
83R:R:L321 R:R:P293 11.45296.57NoNo069
84R:R:S280 R:R:Y239 31.711910.17NoYes089
85R:R:S280 R:R:T276 29.46561.6NoNo088
86R:R:I246 R:R:T276 19.85841.52NoNo088
87R:R:I246 R:R:I269 12.64757.36NoYes884
88R:R:I335 R:R:Y336 15.9746.04YesNo089
89R:R:W291 R:R:Y295 12.69058.68NoYes087
90R:R:L124 R:R:R127 19.45062.43NoYes027
91R:R:L129 R:R:V128 19.62231.49NoNo054
92R:R:L124 R:R:V128 19.11441.49NoNo024
93R:R:F322 R:R:Y294 42.99317.22YesYes156
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:K133 4.53 1 Yes No 0 6 0 1
L:L:?1 R:R:Y294 17.56 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F322 20.85 1 Yes Yes 0 5 0 1
L:L:H2 R:R:M137 6.57 1 Yes No 0 7 0 1
L:L:H2 R:R:Y294 10.89 1 Yes Yes 0 6 0 1
L:L:H2 R:R:Y295 6.53 1 Yes Yes 0 7 0 1
L:L:W3 R:R:Y294 17.36 1 Yes Yes 0 6 0 1
L:L:W3 R:R:G298 4.22 1 Yes No 0 5 0 1
L:L:W3 R:R:W302 16.87 1 Yes Yes 0 4 0 1
L:L:S4 R:R:T206 6.4 0 No Yes 0 4 0 1
L:L:Y5 R:R:Y301 10.92 0 Yes No 0 3 0 1
L:L:Y5 R:R:M307 8.38 0 Yes Yes 0 3 0 1
L:L:Y5 R:R:L308 17.58 0 Yes No 0 1 0 1
L:L:Y5 R:R:S318 6.36 0 Yes No 0 4 0 1
L:L:Y5 R:R:F322 5.16 0 Yes Yes 0 5 0 1
L:L:L7 R:R:Q203 10.65 0 No No 0 4 0 1
L:L:R8 R:R:L308 6.07 0 No No 0 1 0 1
L:L:R8 R:R:P315 5.76 0 No No 0 4 0 1
L:L:P9 R:R:W113 5.4 3 No Yes 0 5 0 1
L:L:P9 R:R:L117 11.49 3 No No 0 5 0 1
L:L:P9 R:R:Q203 9.47 3 No No 0 4 0 1
L:L:?11 R:R:K133 6.98 1 No No 0 6 0 1
R:R:F322 R:R:R56 5.34 1 Yes Yes 5 4 1 2
R:R:K133 R:R:V106 4.55 1 No No 6 7 1 2
R:R:W113 R:R:W119 29.05 3 Yes Yes 5 8 1 2
R:R:M130 R:R:W113 4.65 0 No Yes 5 5 2 1
R:R:Q203 R:R:W113 24.09 3 No Yes 4 5 1 1
R:R:F190 R:R:M130 14.93 2 Yes No 5 5 2 2
R:R:L227 R:R:M137 5.65 0 No No 5 7 2 1
R:R:F190 R:R:T206 7.78 2 Yes Yes 5 4 2 1
R:R:F210 R:R:T206 6.49 2 Yes Yes 4 4 2 1
R:R:E216 R:R:T206 5.64 2 No Yes 4 4 2 1
R:R:E216 R:R:F210 9.33 2 No Yes 4 4 2 2
R:R:N220 R:R:W302 23.73 0 No Yes 4 4 2 1
R:R:F224 R:R:M221 7.46 1 No Yes 5 4 2 2
R:R:M221 R:R:W302 4.65 1 Yes Yes 4 4 2 1
R:R:F224 R:R:F228 8.57 1 No No 5 8 2 2
R:R:F224 R:R:Y295 7.22 1 No Yes 5 7 2 1
R:R:L227 R:R:Y295 7.03 0 No Yes 5 7 2 1
R:R:F228 R:R:Y295 5.16 1 No Yes 8 7 2 1
R:R:W291 R:R:Y295 8.68 0 No Yes 8 7 2 1
R:R:Y294 R:R:Y295 6.95 1 Yes Yes 6 7 1 1
R:R:F322 R:R:Y294 7.22 1 Yes Yes 5 6 1 1
R:R:F322 R:R:L297 7.31 1 Yes No 5 4 1 2
R:R:G298 R:R:W302 8.44 1 No Yes 5 4 1 1
R:R:M307 R:R:W300 13.96 0 Yes No 3 4 1 2
R:R:P305 R:R:Y301 5.56 0 No No 3 3 2 1
R:R:M307 R:R:V313 6.09 0 Yes No 3 5 1 2
L:L:S4 R:R:A205 3.42 0 No No 0 1 0 1
L:L:G6 R:R:L308 3.42 0 No No 0 1 0 1
L:L:L7 R:R:V193 2.98 0 No No 0 1 0 1
R:R:K312 R:R:M307 1.44 0 No Yes 3 3 2 1
L:L:R8 R:R:E311 1.16 0 No No 0 3 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9U4Y_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 4.14
Number of Linked Nodes 256
Number of Links 276
Number of Hubs 31
Number of Links mediated by Hubs 117
Number of Communities 8
Number of Nodes involved in Communities 42
Number of Links involved in Communities 53
Path Summary
Number Of Nodes in MetaPath 94
Number Of Links MetaPath 93
Number of Shortest Paths 41849
Length Of Smallest Path 3
Average Path Length 13.9018
Length of Longest Path 28
Minimum Path Strength 1.41
Average Path Strength 6.66838
Maximum Path Strength 26.57
Minimum Path Correlation 0.7
Average Path Correlation 0.9172
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 41.8504
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 33.8415
Maximum Path Hubs % 100

Details about the values in these tables can be found in the corresponding documentation page .
CodePCA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePCA
NamePidolic acid
SynonymsL-pyroglutamic acid
Identifier
FormulaC5 H7 N O3
Molecular Weight129.114
SMILES
PubChem7405
Formal Charge0
Total Atoms16
Total Chiral Atoms1
Total Bonds16
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?11
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ90WJ2
Sequence
>9U4Y_nogp_Chain_R
STAAKIRVA ITCVLFIFS ACFNIAALW TITYKYKKK SHIRILIIN 
LVAADLFIT LVVMPLDAV WNVTLQWYA GDLACRVLM FLKLAAMYS 
SAFVTVVIS LDRQAAILN PLGIGDAKK KNKIMLCVA WFLSYLLAI 
PQLFVFHTV SRQCATVGS FQAHWQETI YNMFTFFCL FLLPLLIMV 
SCYTRILME ISHKNIPRA RMRTLKMSL VIVLTFIVC WTPYYLLGI 
WYWFSPEML TEEKVPPSL SHILFLFGL LNTCLDPII YGL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7BR3APeptideGonadotrophin Releasing HormoneGnRH1Homo sapiensElagolix--2.792020-10-07doi.org/10.1038/s41467-020-19109-w
9U4WAPeptideGonadotrophin Releasing HormoneGnRH1Sus scrofaGonadoliberin-1-chim(NtGi1L-Gs-CtGq)/β1/γ23.182025-06-11doi.org/10.1073/pnas.2500112122
9U4W (No Gprot) APeptideGonadotrophin Releasing HormoneGnRH1Sus scrofaGonadoliberin-1-3.182025-06-11doi.org/10.1073/pnas.2500112122
9U4YAPeptideGonadotrophin Releasing HormoneGnRH1Xenopus laevisGonadoliberin-1-chim(NtGi1L-Gs-CtGq)/β1/γ23.182025-06-11doi.org/10.1073/pnas.2500112122
9U4Y (No Gprot) APeptideGonadotrophin Releasing HormoneGnRH1Xenopus laevisGonadoliberin-1-3.182025-06-11doi.org/10.1073/pnas.2500112122




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9U4Y_nogp.zip



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