Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y82 7.96167617
2R:R:L90 3.5125456
3R:R:N93 7.365429
4R:R:F100 5.538526
5R:R:Y113 6.715407
6R:R:M114 6.95428
7R:R:D121 7.768529
8R:R:W127 5.6325407
9R:R:F128 7.0325418
10R:R:Y134 7.492515
11R:R:H135 7.042515
12R:R:N139 7.325415
13R:R:W141 6.98667619
14R:R:Y143 6.5625407
15R:R:Y156 8.8405
16R:R:N158 5.104528
17R:R:Y160 7.4725407
18R:R:F165 8.094537
19R:R:Q172 8.19468
20R:R:W199 5.48439
21R:R:L221 4.7225403
22R:R:F240 5.6575403
23R:R:Y242 9.2275405
24R:R:F243 11.695406
25R:R:P254 4.0625409
26R:R:Y262 7.182509
27R:R:M295 5.12406
28R:R:F300 9.48409
29R:R:H310 11.586584
30R:R:L313 3.45401
31R:R:I314 5.84482
32R:R:Y323 6.464504
33R:R:Y326 11.4325404
34R:R:D340 7.05529
35R:R:Y344 6.79875829
36R:R:Y345 6.065407
37R:R:F346 5.55407
38R:R:H354 6.9275445
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:S65 R:R:V61 20.36123.23NoNo056
2R:R:V229 R:R:V61 18.97083.21NoNo046
3R:R:T225 R:R:V229 17.57059.52NoNo044
4R:R:I218 R:R:T225 16.16034.56NoNo044
5R:R:S65 R:R:Y323 25.66066.36NoYes054
6R:R:L69 R:R:Y323 28.83233.52NoYes044
7R:R:L69 R:R:N139 28.20396.87NoYes045
8R:R:I327 R:R:Y323 22.98377.25NoYes044
9R:R:I327 R:R:L78 22.27124.28NoNo045
10R:R:L78 R:R:Y82 14.12674.69NoYes157
11R:R:H135 R:R:P79 17.77834.58YesNo055
12R:R:I136 R:R:P79 14.83925.08NoNo045
13R:R:H310 R:R:Y323 66.53647.62YesYes044
14R:R:H310 R:R:Y311 70.69276.53YesNo045
15R:R:F243 R:R:Y311 71.167710.32YesNo065
16R:R:F243 R:R:Y242 76.066312.38YesYes065
17R:R:L246 R:R:Y242 83.44387.03NoYes055
18R:R:L246 R:R:Y160 83.518110.55NoYes057
19R:R:V250 R:R:Y160 83.79026.31NoYes057
20R:R:L164 R:R:V250 83.92384.47NoNo065
21R:R:L164 R:R:P254 1003.28NoYes069
22R:R:I163 R:R:P254 94.67593.39NoYes079
23R:R:F300 R:R:I163 94.161311.3YesNo097
24R:R:F300 R:R:M295 92.84518.71YesYes096
25R:R:D340 R:R:M295 89.25284.16YesYes096
26R:R:D121 R:R:D340 15.99710.65YesYes299
27R:R:D121 R:R:S337 11.83085.89YesNo099
28R:R:D340 R:R:Y344 66.92236.9YesYes299
29R:R:A118 R:R:Y344 16.37314NoYes289
30R:R:A118 R:R:L97 15.97723.15NoNo087
31R:R:L101 R:R:L97 11.69725.54NoNo047
32R:R:F102 R:R:L101 10.25248.53NoNo044
33R:R:F100 R:R:Y344 43.67648.25YesYes269
34R:R:F100 R:R:V111 41.98913.93YesNo067
35R:R:M114 R:R:Y344 10.48497.18YesYes289
36R:R:T104 R:R:V111 40.8567.93NoNo067
37R:R:D350 R:R:T104 39.7137.23NoNo066
38R:R:D350 R:R:K106 38.55529.68NoNo067
39R:R:H349 R:R:K106 37.36765.24NoNo057
40R:R:I198 R:R:L164 48.58494.28NoNo076
41R:R:I194 R:R:I198 30.61362.94NoNo057
42R:R:I194 R:R:Y113 28.19896.04NoYes057
43R:R:Q172 R:R:Y113 18.30783.38YesYes087
44R:R:K187 R:R:Q172 13.1478.14NoYes668
45R:R:F165 R:R:I198 31.514111.3YesNo077
46R:R:N139 R:R:Y134 16.24945.81YesYes155
47R:R:W141 R:R:Y134 22.34048.68YesYes195
48R:R:L151 R:R:W141 24.26524.56NoYes059
49R:R:L151 R:R:W127 24.46317.97NoYes057
50R:R:F154 R:R:W127 24.73535.01NoYes057
51R:R:F154 R:R:L123 25.02726.09NoNo057
52R:R:L119 R:R:L123 25.35386.92NoNo067
53R:R:L119 R:R:W199 25.77933.42NoYes069
54R:R:C148 R:R:T215 12.22663.38NoNo194
55R:R:L209 R:R:Y156 11.21725.86NoYes045
56R:R:L209 R:R:T206 10.16822.95NoNo047
57R:R:L209 R:R:Y242 12.256310.55NoYes045
58R:R:N304 R:R:Y160 10.14354.65NoYes087
59R:R:H349 R:R:R352 36.19997.9NoNo058
60R:R:R352 R:R:Y345 31.54387.2NoYes087
61R:R:F346 R:R:Y345 27.8087.22YesYes077
62R:R:F346 R:R:L288 16.39783.65YesNo078
63R:R:L288 R:R:Y262 13.87439.38NoYes089
64R:R:K187 R:R:M181 12.06834.32NoNo065
65R:R:P208 R:R:Y242 11.28156.95NoYes075
66R:R:I207 R:R:P208 10.01483.39NoNo047
67R:R:H310 R:R:S320 26.31878.37YesNo842
68R:R:L313 R:R:S320 25.37854.5YesNo012
69R:R:F312 R:R:L313 13.08762.44NoYes031
70R:R:F240 R:R:F312 11.67246.43YesNo033
71R:R:F165 R:R:W199 24.295.01YesYes379
72R:R:H135 R:R:Y134 10.801610.89YesYes155
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 5NJ6
Class A
SubFamily Peptide
Type Proteinase-activated
SubType PAR2
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 4
Date 2017-05-03
D.O.I. 10.1038/nature22309
Net Summary
Imin 3.28
Number of Linked Nodes 273
Number of Links 300
Number of Hubs 38
Number of Links mediated by Hubs 144
Number of Communities 8
Number of Nodes involved in Communities 46
Number of Links involved in Communities 61
Path Summary
Number Of Nodes in MetaPath 73
Number Of Links MetaPath 72
Number of Shortest Paths 42875
Length Of Smallest Path 3
Average Path Length 15.8953
Length of Longest Path 39
Minimum Path Strength 1.425
Average Path Strength 6.45138
Maximum Path Strength 17.755
Minimum Path Correlation 0.7
Average Path Correlation 0.927527
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.125
Average % Of Corr. Nodes 46.9027
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.7858
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP55085
Sequence
>5NJ6_Chain_R
FSVDEFSAS VLTGKLTTV FLPIVYTIV FVVALPSNG MALWVFLFR 
TKKKAPAVI YMANLALAD LLSVIWFPL KIAYHIHGN NWIYGEALC 
NVLIGFFYA NMYCSILFL TCLSVQRAW EIVNPMGHS RKKANIAIG 
ISLAIWLLI LLVTIPLYV VKQTIFIPA LQITTCHDV LPEQLLVGD 
MFNYFLSLA IGVFLFPAF LTASAYVLM IRALENSEK KRKRAIKLA 
VTVAAMYLI CFTPSNLLL VVHYFLIKS QGQSHVYAL YIVALCLST 
LNSCIDPFV YYFVSHDFR DHAKNAL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5NDDAPeptideProteinase-activatedPAR2Homo sapiens-AZ8838; Na-2.82017-05-0310.1038/nature22309
5NDZAPeptideProteinase-activatedPAR2Homo sapiens-AZ3451; Na-3.62017-05-0310.1038/nature22309
5NJ6APeptideProteinase-activatedPAR2Homo sapiens---42017-05-0310.1038/nature22309




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 5NJ6.zip



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