Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.26821120
2R:R:Y82 7.6575457
3R:R:F100 8.51516
4R:R:Y113 7.384507
5R:R:D121 6.144509
6R:R:W127 7.088507
7R:R:F128 7.7458
8R:R:Y134 9.852535
9R:R:H135 7.252535
10R:R:N139 8.25333635
11R:R:W141 6.578509
12R:R:F155 6.63406
13R:R:Y160 9.2525407
14R:R:C161 5.5475447
15R:R:F165 7.6547
16R:R:M166 6.685618
17R:R:S170 5.65409
18R:R:I218 3.4225404
19R:R:L221 2.58403
20R:R:D228 6.7575434
21R:R:L230 6.035405
22R:R:L234 7.0025405
23R:R:Y242 8.9825405
24R:R:F243 6.84526
25R:R:F251 7.246518
26R:R:Y262 6.69833619
27R:R:M265 4.26418
28R:R:R282 7.1475406
29R:R:L293 2.685408
30R:R:Y296 5.96167619
31R:R:F300 7.094519
32R:R:H310 9.278524
33R:R:Y311 8.15425
34R:R:Y326 8.2275404
35R:R:N336 8.2875419
36R:R:D340 7.8025419
37R:R:Y344 7.342519
38R:R:Y345 5.94333617
39R:R:F351 7.086518
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:V229 12.252110.7YesNo004
2R:R:H135 R:R:Y134 13.890610.89YesYes355
3L:L:?1 R:R:Y311 27.41946.55YesYes205
4R:R:F243 R:R:Y311 36.14829.28YesYes265
5R:R:F243 R:R:Y156 46.504110.32YesNo065
6R:R:F155 R:R:Y156 42.895611.35YesNo065
7R:R:F128 R:R:F155 14.29415.36YesYes086
8R:R:F155 R:R:K131 29.00493.72YesNo067
9R:R:F243 R:R:Y242 86.25147.22YesYes065
10R:R:L246 R:R:Y242 98.74794.69NoYes055
11R:R:L246 R:R:Y160 10016.41NoYes057
12R:R:M159 R:R:Y160 43.64764.79NoYes077
13R:R:M159 R:R:S333 43.67794.6NoNo078
14R:R:F300 R:R:S333 44.06245.28YesNo098
15R:R:F300 R:R:M166 77.20633.73YesYes198
16R:R:N304 R:R:Y160 64.37846.98NoYes087
17R:R:F251 R:R:N304 64.173820.54YesNo088
18R:R:F251 R:R:F300 44.80124.29YesYes189
19R:R:F300 R:R:N336 11.26910.87YesYes199
20R:R:M166 R:R:Y344 69.54419.58YesYes189
21R:R:Y344 R:R:Y345 39.01233.97YesYes197
22R:R:F351 R:R:Y345 13.52125.16YesYes187
23R:R:V250 R:R:Y160 19.37078.83NoYes057
24R:R:L164 R:R:V250 14.00624.47NoNo065
25R:R:I198 R:R:L164 13.09887.14NoNo076
26R:R:F165 R:R:I198 12.18777.54YesNo077
27R:R:M114 R:R:Y345 21.3017.18NoYes187
28R:R:L169 R:R:M114 21.39385.65NoNo088
29R:R:L169 R:R:Y113 20.48463.52NoYes087
30R:R:Q172 R:R:Y113 11.907311.27NoYes087
31R:R:A110 R:R:Q172 10.93564.55NoNo088
32R:R:G153 R:R:L209 10.97915.13NoNo064
33R:R:W141 R:R:Y134 12.75227.72YesYes095
34R:R:F251 R:R:I163 19.64353.77YesNo187
35R:R:I163 R:R:Y296 19.73824.84NoYes179
36R:R:T258 R:R:Y296 11.096612.48NoYes189
37R:R:S170 R:R:T258 11.0179.59YesNo098
38R:R:R173 R:R:Y344 30.7066.17NoYes199
39R:R:R173 R:R:Y262 15.03858.23NoYes199
40R:R:V292 R:R:Y344 17.410210.09NoYes089
41R:R:V292 R:R:Y262 15.22238.83NoYes089
42R:R:M265 R:R:R173 15.00634.96YesNo189
43R:R:I289 R:R:Y262 36.98558.46NoYes189
44R:R:I289 R:R:M265 12.73324.37NoYes188
45R:R:I266 R:R:I289 46.68037.36NoNo058
46R:R:I266 R:R:R270 40.48042.51NoNo054
47R:R:I286 R:R:R270 37.37193.76NoNo064
48R:R:I286 R:R:L269 34.26154.28NoNo068
49R:R:L269 R:R:R282 28.02944.86NoYes086
50R:R:M274 R:R:R282 12.581713.65NoYes046
51R:R:L209 R:R:Y242 15.038512.89NoYes045
52R:R:H135 R:R:K131 27.13723.93YesNo057
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:V61 4.75 2 Yes No 0 6 0 1
L:L:?1 R:R:S65 7.19 2 Yes No 0 5 0 1
L:L:?1 R:R:V68 5.94 2 Yes No 0 4 0 1
L:L:?1 R:R:H227 7.18 2 Yes No 0 5 0 1
L:L:?1 R:R:V229 10.7 2 Yes No 0 4 0 1
L:L:?1 R:R:E232 6.34 2 Yes No 0 1 0 1
L:L:?1 R:R:L235 24.29 2 Yes No 0 4 0 1
L:L:?1 R:R:H310 10.26 2 Yes Yes 0 4 0 1
L:L:?1 R:R:Y311 6.55 2 Yes Yes 0 5 0 1
L:L:?1 R:R:S320 22.76 2 Yes No 0 2 0 1
L:L:?1 R:R:Y323 28.99 2 Yes No 0 4 0 1
R:R:I218 R:R:V61 4.61 0 Yes No 4 6 2 1
R:R:F64 R:R:V68 7.87 0 No No 2 4 2 1
R:R:H227 R:R:I152 9.28 0 No No 5 5 1 2
R:R:H227 R:R:Q214 7.42 0 No No 5 4 1 2
R:R:L230 R:R:Q214 3.99 0 Yes No 5 4 2 2
R:R:I218 R:R:V229 4.61 0 Yes No 4 4 2 1
R:R:T225 R:R:V229 9.52 0 No No 4 4 2 1
R:R:L230 R:R:L235 8.3 0 Yes No 5 4 2 1
R:R:F243 R:R:M239 3.73 2 Yes No 6 4 2 2
R:R:M239 R:R:Y311 4.79 2 No Yes 4 5 2 1
R:R:F243 R:R:Y311 9.28 2 Yes Yes 6 5 2 1
R:R:H310 R:R:Y311 11.98 2 Yes Yes 4 5 1 1
R:R:H310 R:R:I314 6.63 2 Yes No 4 2 1 2
R:R:H310 R:R:V322 5.54 2 Yes No 4 4 1 2
R:R:H310 R:R:Y323 11.98 2 Yes No 4 4 1 1
R:R:I327 R:R:Y323 7.25 0 No No 4 4 2 1
R:R:D62 R:R:S65 2.94 0 No No 7 5 2 1
R:R:E232 R:R:Q233 2.55 0 No No 1 1 1 2
R:R:A324 R:R:V68 1.7 0 No No 1 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9E7R_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.65
Number of Linked Nodes 279
Number of Links 314
Number of Hubs 39
Number of Links mediated by Hubs 154
Number of Communities 5
Number of Nodes involved in Communities 37
Number of Links involved in Communities 51
Path Summary
Number Of Nodes in MetaPath 53
Number Of Links MetaPath 52
Number of Shortest Paths 84672
Length Of Smallest Path 3
Average Path Length 15.6752
Length of Longest Path 32
Minimum Path Strength 1.515
Average Path Strength 7.11648
Maximum Path Strength 26.64
Minimum Path Correlation 0.7
Average Path Correlation 0.929303
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 47.4236
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.864
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1B
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1B
Name1-deoxy-alpha-L-xylulofuranose-1,2-borate
Synonyms
Identifier
FormulaC5 H10 B O6
Molecular Weight176.94
SMILES
PubChem118797262
Formal Charge-1
Total Atoms22
Total Chiral Atoms3
Total Bonds23
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP55085
Sequence
>9E7R_nogp_Chain_R
VDEFSASVL TGKLTTVFL PIVYTIVFV VGLPSNGMA LWVFLFRTK 
KKHPAVIYM ANLALADLL SVIWFPLKI AYHIHGNNW IYGEALCNV 
LIGFFYGNM YCSILFMTC LSVQRYWVI VNPMGHSRK KANIAIGIS 
LAIWLLILL VTIPLYVVK QTIFIPALN ITTCHDVLP EQLLVGDMF 
NYFLSLAIG VFLFPAFLT ASAYVLMIR MLRSSAMDE NSEKKRKRA 
IKLIVTVLA MYLICFTPS NLLLVVHYF LIKSQGQSH VYALYIVAL 
CLSTLNSCI DPFVYYFVS HDFRDHAK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5NDDAPeptideProteinase ActivatedPAR2Homo sapiens-AZ8838; Na-2.82017-05-03doi.org/10.1038/nature22309
5NDZAPeptideProteinase ActivatedPAR2Homo sapiens-AZ3451; Na-3.62017-05-03doi.org/10.1038/nature22309
5NJ6APeptideProteinase ActivatedPAR2Homo sapiens---42017-05-03doi.org/10.1038/nature22309
9D0AAPeptideProteinase ActivatedPAR2Homo sapiens--chim(NtGi1L-Gs-CtGq)/β1/γ23.12025-05-07doi.org/10.1038/s41467-025-59138-x
9D0A (No Gprot) APeptideProteinase ActivatedPAR2Homo sapiens--3.12025-05-07doi.org/10.1038/s41467-025-59138-x
9E7RAPeptideProteinase ActivatedPAR2Homo sapiensGB88-chim(NtGi1L-Gs-CtGq)/β1/γ23.182025-05-07doi.org/10.1038/s41467-025-59138-x
9E7R (No Gprot) APeptideProteinase ActivatedPAR2Homo sapiensGB88-3.182025-05-07doi.org/10.1038/s41467-025-59138-x
8ZMDAPeptideProteinase ActivatedPAR2Homo sapiens--chim(NtGi1L-Gs-CtGq)/β1/γ23.252025-05-28To be published
8ZMD (No Gprot) APeptideProteinase ActivatedPAR2Homo sapiens--3.252025-05-28To be published
8ZMEAPeptideProteinase ActivatedPAR2Homo sapiens--chim(NtGi1-G13)/β1/γ23.22025-05-28To be published
8ZME (No Gprot) APeptideProteinase ActivatedPAR2Homo sapiens--3.22025-05-28To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9E7R_nogp.zip



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