Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L43 5.245406
2R:R:S47 3.6525407
3R:R:V54 3.77409
4R:R:S61 4.585407
5R:R:K67 6.5825426
6R:R:Y70 6.23333628
7R:R:F72 4.91538
8R:R:F87 6.74616
9R:R:F91 8.61516
10R:R:F94 6.775613
11R:R:H95 7.646514
12R:R:T114 5.8325414
13R:R:M115 6.4025405
14R:R:F117 5.836516
15R:R:D130 7.5175439
16R:R:Y137 6.66505
17R:R:W158 5.5925409
18R:R:Y166 5.7175404
19R:R:R177 11.6125443
20R:R:F183 9.73516
21R:R:P184 8.75515
22R:R:I186 4.472505
23R:R:P187 6.15444
24R:R:W194 7.89833615
25R:R:F202 4.95417
26R:R:Y209 7.11619
27R:R:L254 4.1275419
28R:R:W258 5.25375818
29R:R:M265 4.702516
30R:R:L273 4.7875401
31R:R:F281 5.2825414
32R:R:I298 4.9975409
33R:R:Y299 7.04714719
34L:L:?1 9.205381310
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F94 R:R:M22 10.0354.98YesNo037
2R:R:F94 R:R:M26 10.0353.73YesNo036
3R:R:F183 R:R:F281 24.96396.43YesYes164
4R:R:F281 R:R:L182 46.36312.44YesNo044
5R:R:L182 R:R:L273 21.59494.15NoYes041
6L:L:?1 R:R:F94 21.800911.75YesYes103
7L:L:?1 R:R:F183 28.765726.63YesYes106
8R:R:H95 R:R:L28 61.14777.71YesNo046
9R:R:K33 R:R:L28 35.43171.41NoNo056
10R:R:F283 R:R:V36 17.87555.24NoNo045
11R:R:L28 R:R:V36 22.29552.98NoNo065
12R:R:K33 R:R:V96 22.29553.04NoNo054
13R:R:F91 R:R:H95 22.192513.58YesYes164
14R:R:F91 R:R:M286 12.34296.22YesNo065
15L:L:?1 R:R:F87 82.969310.97YesYes106
16R:R:F87 R:R:L289 74.66526.09YesNo066
17R:R:L289 R:R:L43 72.51185.54NoYes066
18R:R:L43 R:R:M293 72.87254.24YesNo066
19R:R:M293 R:R:S47 67.98894.6NoYes067
20R:R:S292 R:R:S47 55.41933.26NoYes097
21R:R:E50 R:R:P296 17.48411NoNo089
22R:R:N51 R:R:P296 42.33466.52NoNo099
23R:R:D80 R:R:N51 50.247312.12NoNo099
24R:R:D80 R:R:S292 52.843610.31NoNo099
25R:R:A77 R:R:V54 11.7353.39NoYes099
26R:R:P296 R:R:V54 23.15063.53NoYes099
27L:L:?1 R:R:T114 63.280410.43YesYes104
28R:R:S165 R:R:T114 83.8453.2NoYes074
29R:R:M115 R:R:S165 82.69114.6YesNo057
30R:R:M115 R:R:W158 69.31795.82YesYes059
31R:R:S75 R:R:W158 91.3256.18NoYes099
32R:R:L154 R:R:S75 88.23419.01NoNo089
33R:R:F72 R:R:L154 86.78143.65YesNo088
34R:R:D130 R:R:F72 74.08827.17YesYes398
35R:R:D130 R:R:S69 64.57864.42YesNo098
36R:R:S69 R:R:Y70 62.23982.54NoYes088
37R:R:K67 R:R:Y70 50.556411.94YesYes268
38R:R:K67 R:R:L64 40.7485.64YesNo068
39R:R:L64 R:R:S61 38.131112.01NoYes087
40R:R:S60 R:R:S61 21.99671.63NoYes057
41R:R:S60 R:R:Y56 19.23558.9NoNo055
42R:R:F72 R:R:L126 11.5297.31YesNo086
43R:R:F117 R:R:F87 78.36394.29YesYes166
44R:R:F117 R:R:W258 69.45197.02YesYes168
45R:R:L254 R:R:W258 63.40413.42YesYes198
46R:R:L124 R:R:L254 1004.15NoYes189
47L:L:?1 R:R:W194 33.80388.79YesYes105
48R:R:I198 R:R:W194 51.390915.27NoYes175
49R:R:F202 R:R:I198 63.41443.77YesNo177
50R:R:F202 R:R:L254 49.00066.09YesYes179
51R:R:N291 R:R:W258 19.22524.52NoYes098
52R:R:L124 R:R:Y299 95.281311.72NoYes189
53R:R:M115 R:R:Y166 23.91311.97YesYes054
54R:R:V92 R:R:V96 13.4351.6NoNo054
55R:R:L169 R:R:Y166 13.48654.69NoYes064
56R:R:L108 R:R:L169 10.82844.15NoNo046
57L:L:?1 R:R:I186 33.24754.59YesYes005
58R:R:I186 R:R:Y190 11.07563.63YesNo057
59R:R:P168 R:R:Y190 19.07079.74NoNo057
60R:R:L107 R:R:P168 11.36414.93NoNo055
61R:R:W194 R:R:Y190 23.66587.72YesNo057
62R:R:T118 R:R:W194 16.24776.06NoYes165
63R:R:S161 R:R:T118 28.06513.2NoNo086
64R:R:A119 R:R:S161 26.94213.42NoNo078
65R:R:V121 R:R:W258 11.34354.9NoYes188
66R:R:F202 R:R:V121 11.77623.93YesNo178
67R:R:I205 R:R:L254 13.83682.85NoYes089
68R:R:I205 R:R:L125 10.40595.71NoNo086
69R:R:Y209 R:R:Y299 79.09544.96YesYes199
70R:R:D130 R:R:Y141 33.154810.34YesNo097
71R:R:L247 R:R:Y209 71.110710.55NoYes089
72R:R:L247 R:R:V212 64.5582.98NoNo089
73R:R:V212 R:R:Y132 62.52833.79NoNo098
74R:R:R136 R:R:Y132 56.717514.4NoNo068
75R:R:L133 R:R:Y141 29.83722.34NoNo057
76R:R:L133 R:R:Y137 28.54942.34NoYes055
77R:R:K215 R:R:R136 43.8088.66NoNo066
78R:R:F197 R:R:L201 11.57028.53NoNo057
79R:R:L201 R:R:V121 19.29732.98NoNo078
80R:R:I186 R:R:P187 27.17915.08YesYes054
81R:R:P187 R:R:R177 11.33325.76YesYes443
82R:R:L182 R:R:S268 21.62587.51NoNo043
83R:R:M265 R:R:W194 36.48263.49YesYes165
84R:R:L269 R:R:S268 17.33981.5NoNo033
85R:R:L195 R:R:M265 23.137.07NoYes046
86R:R:L195 R:R:L262 17.52525.54NoNo046
87R:R:L262 R:R:W258 16.95863.42NoYes068
88R:R:K215 R:R:L135 40.57282.82NoNo069
89R:R:L135 R:R:L243 33.8762.77NoNo597
90R:R:L239 R:R:L243 30.72332.77NoNo057
91R:R:L239 R:R:V220 24.02644.47NoNo055
92R:R:M237 R:R:V220 17.35013.04NoNo045
93R:R:D240 R:R:M237 13.91925.54NoNo074
94R:R:D240 R:R:H217 10.46788.82NoNo075
95R:R:I298 R:R:Y299 20.42043.63YesYes099
96R:R:I298 R:R:L249 10.30297.14YesNo096
97R:R:L287 R:R:P260 11.11683.28NoNo089
98R:R:C257 R:R:L287 13.84711.59NoNo088
99R:R:C257 R:R:N291 16.55689.45NoNo089
100R:R:F281 R:R:L264 12.7558.53YesNo044
101R:R:E50 R:R:V297 14.61982.85NoNo086
102R:R:L301 R:R:V297 11.7352.98NoNo066
103R:R:Q63 R:R:S61 11.48771.44NoYes067
104R:R:C313 R:R:Y56 11.13742.69NoNo065
105L:L:?1 R:R:H95 45.1374.96YesYes104
106L:L:?1 R:R:P184 10.02478.45YesYes105
107R:R:F281 R:R:M265 37.65713.73YesYes146
108R:R:T114 R:R:W194 22.96526.06YesYes145
109R:R:A119 R:R:W158 25.89127.78NoYes079
110R:R:R136 R:R:Y137 27.673624.69NoYes065
111R:R:F87 R:R:F91 19.75078.57YesYes166
112R:R:I198 R:R:T118 13.12596.08NoNo176
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F94 R:R:M22 4.98 1 Yes No 3 7 1 2
R:R:P184 R:R:Y25 20.86 1 Yes No 5 4 1 2
R:R:F94 R:R:M26 3.73 1 Yes No 3 6 1 2
R:R:H95 R:R:L28 7.71 1 Yes No 4 6 1 2
R:R:F87 R:R:F91 8.57 1 Yes Yes 6 6 1 1
R:R:F87 R:R:V113 5.24 1 Yes No 6 5 1 1
R:R:F117 R:R:F87 4.29 1 Yes Yes 6 6 2 1
R:R:F87 R:R:S285 5.28 1 Yes No 6 5 1 1
R:R:F87 R:R:L289 6.09 1 Yes No 6 6 1 2
L:L:?1 R:R:F87 10.97 1 Yes Yes 0 6 0 1
R:R:K109 R:R:S90 6.12 0 No No 5 4 2 1
L:L:?1 R:R:S90 3.86 1 Yes No 0 4 0 1
R:R:F91 R:R:H95 13.58 1 Yes Yes 6 4 1 1
R:R:F91 R:R:S285 5.28 1 Yes No 6 5 1 1
R:R:F91 R:R:M286 6.22 1 Yes No 6 5 1 2
L:L:?1 R:R:F91 9.4 1 Yes Yes 0 6 0 1
R:R:F94 R:R:H95 9.05 1 Yes Yes 3 4 1 1
R:R:F106 R:R:F94 5.36 1 No Yes 9 3 2 1
R:R:F94 R:R:P184 5.78 1 Yes Yes 3 5 1 1
L:L:?1 R:R:F94 11.75 1 Yes Yes 0 3 0 1
L:L:?1 R:R:H95 4.96 1 Yes Yes 0 4 0 1
R:R:F106 R:R:I110 5.02 1 No No 9 4 2 2
R:R:F106 R:R:P184 4.33 1 No Yes 9 5 2 1
R:R:F183 R:R:I110 6.28 1 Yes No 6 4 1 2
R:R:I110 R:R:I186 4.42 0 No Yes 4 5 2 1
R:R:G111 R:R:T114 3.64 0 No Yes 6 4 2 1
L:L:?1 R:R:V113 7.66 1 Yes No 0 5 0 1
R:R:S165 R:R:T114 3.2 0 No Yes 7 4 2 1
R:R:T114 R:R:W194 6.06 1 Yes Yes 4 5 1 1
L:L:?1 R:R:T114 10.43 1 Yes Yes 0 4 0 1
R:R:T118 R:R:W194 6.06 1 No Yes 6 5 2 1
R:R:I198 R:R:T118 6.08 1 No No 7 6 2 2
R:R:I186 R:R:S180 4.64 0 Yes No 5 4 1 2
R:R:F183 R:R:P184 4.33 1 Yes Yes 6 5 1 1
R:R:F183 R:R:M265 4.98 1 Yes Yes 6 6 1 2
R:R:F183 R:R:F281 6.43 1 Yes Yes 6 4 1 2
L:L:?1 R:R:F183 26.63 1 Yes Yes 0 6 0 1
L:L:?1 R:R:P184 8.45 1 Yes Yes 0 5 0 1
R:R:I186 R:R:P187 5.08 0 Yes Yes 5 4 1 2
R:R:I186 R:R:Y190 3.63 0 Yes No 5 7 1 2
L:L:?1 R:R:I186 4.59 1 Yes Yes 0 5 0 1
R:R:W194 R:R:Y190 7.72 1 Yes No 5 7 1 2
R:R:L191 R:R:M265 4.24 0 No Yes 5 6 1 2
L:L:?1 R:R:L191 4.45 1 Yes No 0 5 0 1
R:R:I198 R:R:W194 15.27 1 No Yes 7 5 2 1
R:R:M265 R:R:W194 3.49 1 Yes Yes 6 5 2 1
L:L:?1 R:R:W194 8.79 1 Yes Yes 0 5 0 1
R:R:F281 R:R:M265 3.73 1 Yes Yes 4 6 2 2
L:L:?1 R:R:S285 7.73 1 Yes No 0 5 0 1
R:R:A282 R:R:H95 2.93 0 No Yes 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6KPF_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.2
Number of Linked Nodes 258
Number of Links 286
Number of Hubs 34
Number of Links mediated by Hubs 139
Number of Communities 5
Number of Nodes involved in Communities 44
Number of Links involved in Communities 66
Path Summary
Number Of Nodes in MetaPath 113
Number Of Links MetaPath 112
Number of Shortest Paths 38571
Length Of Smallest Path 3
Average Path Length 12.7593
Length of Longest Path 34
Minimum Path Strength 1.34
Average Path Strength 6.20312
Maximum Path Strength 19.545
Minimum Path Correlation 0.7
Average Path Correlation 0.927288
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 53.4788
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.7298
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeE3R
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeE3R
Name7-[(6aR,9R,10aR)-1-Hydroxy-9-(hydroxymethyl)-6,6-dimethyl-6a,7,8,9,10,10a-hexahydro-6H-benzo[c]chromen-3-yl]- 7-methyloctanenitrile
Synonyms
Identifier
FormulaC25 H37 N O3
Molecular Weight399.566
SMILES
PubChem145915889
Formal Charge0
Total Atoms66
Total Chiral Atoms3
Total Bonds68
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP34972
Sequence
>6KPF_nogp_Chain_R
PMKDYMILS GPQKTAVAV LCTLLGLLS ALENVAVLY LILSSHQLR 
RKPSYLFIG SLAGADFLA SVVFACSFV NFHVFHGVD SKAVFLLKI 
GSVTMTFTA SVGSLLLTA IDRYLCLRY PPSYKALLT RGRALVTLG 
IMWVLSALV SYLPLMGWT CCPRPCSEL FPLIPNDYL LSWLLFIAF 
LFSGIIYTY GHVLWKAHQ HVASLSGHQ MRLDVRLAK TLGLVLAVL 
LICWFPVLA LMAHSLATT LSDQVKKAF AFCSMLCLI NSMVNPVIY 
ALRSGEIRS SAHHCLAHW KK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5ZTYALipidCannabinoidCB2Homo sapiensAM10257--2.82019-01-30doi.org/10.1016/j.cell.2018.12.011
6KPCALipidCannabinoidCB2Homo sapiensAM12033--3.22020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPFALipidCannabinoidCB2Homo sapiensAM12033-Gi1/β1/γ22.92020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPF (No Gprot) ALipidCannabinoidCB2Homo sapiensAM12033-2.92020-02-12doi.org/10.1016/j.cell.2020.01.008
6PT0ALipidCannabinoidCB2Homo sapiensWIN 55212-2-Gi1/β1/γ23.22020-02-12doi.org/10.1016/j.cell.2020.01.007
6PT0 (No Gprot) ALipidCannabinoidCB2Homo sapiensWIN 55212-2-3.22020-02-12doi.org/10.1016/j.cell.2020.01.007
8GUQALipidCannabinoidCB2Homo sapiensOlorinab-Gi1/β1/γ23.082023-05-10doi.org/10.1038/s41467-023-37112-9
8GUQ (No Gprot) ALipidCannabinoidCB2Homo sapiensOlorinab-3.082023-05-10doi.org/10.1038/s41467-023-37112-9
8GURALipidCannabinoidCB2Homo sapiensCP55940-Gi1/β1/γ22.842023-05-10doi.org/10.1038/s41467-023-37112-9
8GUR (No Gprot) ALipidCannabinoidCB2Homo sapiensCP55940-2.842023-05-10doi.org/10.1038/s41467-023-37112-9
8GUSALipidCannabinoidCB2Homo sapiensHU-308-Gi1/β1/γ22.972023-05-10doi.org/10.1038/s41467-023-37112-9
8GUS (No Gprot) ALipidCannabinoidCB2Homo sapiensHU-308-2.972023-05-10doi.org/10.1038/s41467-023-37112-9
8GUTALipidCannabinoidCB2Homo sapiensLEI-102-Gi1/β1/γ22.982023-05-10doi.org/10.1038/s41467-023-37112-9
8GUT (No Gprot) ALipidCannabinoidCB2Homo sapiensLEI-102-2.982023-05-10doi.org/10.1038/s41467-023-37112-9
8X3LALipidCannabinoidCB2Homo sapiensXWD-Gi1/β1/γ23.132024-11-20doi.org/10.1073/pnas.2401091121
8X3L (No Gprot) ALipidCannabinoidCB2Homo sapiensXWD-3.132024-11-20doi.org/10.1073/pnas.2401091121




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Download 6KPF_nogp.zip



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