Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:M22 5.15517
2R:R:L28 3.2975406
3R:R:K33 5.84555
4R:R:L43 3.85406
5R:R:L64 5.665428
6R:R:R65 7.1675433
7R:R:Y70 8.286528
8R:R:F72 4.47568
9R:R:D80 7.545409
10R:R:F81 3.9425407
11R:R:F87 6.945616
12R:R:F94 6.728513
13R:R:H95 6.775414
14R:R:F106 7.466519
15R:R:T114 4.155414
16R:R:M115 5.5475415
17R:R:D130 7.99409
18R:R:L154 5.015408
19R:R:W158 4.84509
20R:R:Y166 4.92414
21R:R:W172 7.254515
22R:R:F183 10.4825416
23R:R:P184 7.82415
24R:R:I186 5.055415
25R:R:P187 5.2125404
26R:R:Y190 9.148517
27R:R:W194 11.75415
28R:R:L201 3.915407
29R:R:F202 6.43407
30R:R:Y209 7.505649
31R:R:D240 7.3625407
32R:R:W258 7.3825408
33R:R:M265 4.5275406
34R:R:F281 7.122514
35R:R:N291 6.8725409
36R:R:P296 4.8575409
37R:R:Y299 8.824549
38R:R:E305 5.1825426
39L:L:?1 9.535711410
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H95 R:R:L28 62.31765.14YesYes046
2R:R:F283 R:R:L28 14.12853.65NoYes046
3R:R:G30 R:R:K33 11.30155.23NoYes545
4R:R:K33 R:R:L28 44.07892.82YesYes056
5R:R:K33 R:R:V96 25.20194.55YesNo054
6R:R:F87 R:R:L289 30.05477.31YesNo066
7L:L:?1 R:R:F87 61.431710.98YesYes106
8L:L:?1 R:R:F94 15.561510.98YesYes103
9L:L:?1 R:R:P184 15.65277.9YesYes105
10R:R:L289 R:R:L43 28.41325.54NoYes066
11R:R:L43 R:R:M293 21.63894.24YesNo066
12R:R:F117 R:R:F87 58.61137.5NoYes066
13R:R:F117 R:R:W258 57.12618.02NoYes068
14R:R:N291 R:R:W258 93.8515.65YesYes098
15R:R:N291 R:R:N295 86.8169.54YesNo099
16R:R:D80 R:R:N295 85.74789.42YesNo099
17R:R:D80 R:R:N51 24.92186.73YesNo099
18L:L:?1 R:R:S285 38.13849.93YesNo105
19R:R:C288 R:R:S285 37.7413.44NoNo075
20R:R:C288 R:R:W258 37.43497.84NoYes078
21R:R:E50 R:R:M293 19.95835.41NoNo086
22R:R:E50 R:R:P296 19.645611NoYes089
23R:R:N51 R:R:P296 17.82184.89NoYes099
24R:R:N51 R:R:S47 13.4644.47NoNo097
25R:R:S47 R:R:S84 10.11596.52NoNo078
26R:R:L82 R:R:T116 11.97892.95NoNo077
27R:R:A83 R:R:T116 14.94275.03NoNo087
28R:R:A83 R:R:F117 16.05654.16NoNo086
29R:R:M115 R:R:T116 16.38874.52YesNo057
30R:R:M115 R:R:S165 48.71034.6YesNo157
31R:R:S165 R:R:T114 51.94114.8NoYes174
32L:L:?1 R:R:T114 37.78664.43YesYes104
33R:R:L64 R:R:Y70 18.32995.86YesYes288
34R:R:K67 R:R:Y70 34.171410.75NoYes068
35R:R:K67 R:R:P68 35.68263.35NoNo065
36R:R:L145 R:R:P68 37.16786.57NoNo065
37R:R:D130 R:R:L145 44.48935.43YesNo096
38R:R:D130 R:R:F72 52.67723.58YesYes098
39R:R:F72 R:R:L154 58.23353.65YesYes088
40R:R:L154 R:R:W158 56.22725.69YesYes089
41R:R:M115 R:R:W158 62.33063.49YesYes059
42R:R:L64 R:R:S61 15.43777.51YesNo087
43R:R:L154 R:R:S75 36.32759.01YesNo089
44R:R:S123 R:R:S75 35.76084.89NoNo089
45R:R:D80 R:R:L76 86.61418.14YesNo099
46R:R:L124 R:R:L76 1004.15NoNo089
47R:R:F91 R:R:H95 14.590910.18NoYes164
48R:R:D101 R:R:K109 14.16759.68NoNo025
49R:R:V92 R:R:V96 19.69124.81NoNo054
50L:L:?1 R:R:Y190 30.73223.52YesYes107
51L:L:?1 R:R:W194 14.6319.85YesYes105
52R:R:I198 R:R:W194 11.77716.44NoYes175
53R:R:F202 R:R:I198 11.71186.28YesNo077
54R:R:F202 R:R:V121 16.38876.55YesNo078
55R:R:L124 R:R:Y299 97.84398.21NoYes089
56R:R:L201 R:R:V121 12.83222.98YesNo078
57R:R:A128 R:R:Y209 15.74396.67NoYes099
58R:R:Y209 R:R:Y299 88.92654.96YesYes499
59R:R:A128 R:R:T208 13.15145.03NoNo096
60R:R:L247 R:R:Y209 69.482812.89NoYes089
61R:R:L247 R:R:V212 62.5132.98NoNo089
62R:R:V212 R:R:Y132 60.17463.79NoNo098
63R:R:R136 R:R:Y132 48.254311.32NoNo068
64R:R:H211 R:R:Y132 10.545920.69NoNo058
65R:R:K215 R:R:R136 33.51354.95NoNo066
66R:R:K215 R:R:L135 30.99274.23NoNo069
67R:R:R136 R:R:Y137 13.151420.58NoNo065
68R:R:W172 R:R:Y190 24.348613.5YesYes157
69R:R:F183 R:R:I186 13.61393.77YesYes165
70L:L:?1 R:R:F183 16.199827.82YesYes106
71R:R:I186 R:R:Y190 17.29429.67YesYes157
72R:R:I186 R:R:P187 26.68713.39YesYes054
73R:R:P187 R:R:W172 15.32710.81YesYes045
74R:R:C174 R:R:P187 12.12223.77NoYes054
75R:R:C175 R:R:R177 12.12225.57NoNo033
76R:R:P187 R:R:R177 23.74282.88YesNo043
77L:L:?1 R:R:F281 30.797311.71YesYes104
78R:R:F281 R:R:L182 16.56469.74YesNo044
79R:R:L182 R:R:S268 14.53889.01NoNo043
80R:R:L191 R:R:S268 12.53NoNo053
81R:R:A216 R:R:D240 18.32331.54NoYes087
82R:R:A216 R:R:L135 20.72691.58NoNo789
83R:R:D240 R:R:M237 10.54595.54YesNo074
84R:R:C284 R:R:L264 10.44823.17NoNo044
85R:R:F281 R:R:L264 12.54.87YesNo044
86R:R:I58 R:R:V54 11.79653.07NoNo089
87R:R:P296 R:R:V54 13.71811.77YesNo099
88L:L:?1 R:R:H95 46.87343.86YesYes104
89R:R:P184 R:R:Y25 10.252711.13YesNo154
90L:L:?1 R:R:F106 17.64594.39YesYes109
91R:R:F87 R:R:F91 15.09255.36YesNo166
92R:R:L76 R:R:S123 35.33096.01NoNo098
93R:R:F202 R:R:W258 13.26868.02YesYes078
94R:R:T114 R:R:Y190 14.89063.75YesYes147
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:M22 R:R:Y25 4.79 1 Yes No 7 4 2 2
R:R:F94 R:R:M22 4.98 1 Yes Yes 3 7 1 2
R:R:M22 R:R:P184 5.03 1 Yes Yes 7 5 2 1
R:R:L185 R:R:M22 4.24 0 No Yes 4 7 2 2
R:R:P184 R:R:Y25 11.13 1 Yes No 5 4 1 2
R:R:F94 R:R:M26 4.98 1 Yes No 3 6 1 2
R:R:H95 R:R:L28 5.14 1 Yes Yes 4 6 1 2
R:R:F87 R:R:F91 5.36 1 Yes No 6 6 1 1
R:R:F87 R:R:V113 5.24 1 Yes No 6 5 1 1
R:R:F117 R:R:F87 7.5 0 No Yes 6 6 2 1
R:R:F87 R:R:S285 5.28 1 Yes No 6 5 1 1
R:R:F87 R:R:L289 7.31 1 Yes No 6 6 1 2
L:L:?1 R:R:F87 10.98 1 Yes Yes 0 6 0 1
R:R:F91 R:R:H95 10.18 1 No Yes 6 4 1 1
L:L:?1 R:R:F91 5.86 1 Yes No 0 6 0 1
R:R:F94 R:R:H95 7.92 1 Yes Yes 3 4 1 1
R:R:D101 R:R:F94 4.78 0 No Yes 2 3 2 1
L:L:?1 R:R:F94 10.98 1 Yes Yes 0 3 0 1
L:L:?1 R:R:H95 3.86 1 Yes Yes 0 4 0 1
R:R:D101 R:R:F106 8.36 0 No Yes 2 9 2 1
R:R:F106 R:R:I110 10.05 1 Yes No 9 4 1 1
R:R:F106 R:R:P184 7.22 1 Yes Yes 9 5 1 1
R:R:F106 R:R:L185 7.31 1 Yes No 9 4 1 2
L:L:?1 R:R:F106 4.39 1 Yes Yes 0 9 0 1
L:L:?1 R:R:I110 6 1 Yes No 0 4 0 1
R:R:G111 R:R:T114 3.64 0 No Yes 6 4 2 1
L:L:?1 R:R:V113 6.27 1 Yes No 0 5 0 1
R:R:S165 R:R:T114 4.8 1 No Yes 7 4 2 1
R:R:T114 R:R:Y190 3.75 1 Yes Yes 4 7 1 1
L:L:?1 R:R:T114 4.43 1 Yes Yes 0 4 0 1
R:R:T118 R:R:W194 6.06 1 No Yes 6 5 2 1
R:R:I198 R:R:T118 6.08 1 No No 7 6 2 2
R:R:P168 R:R:W172 4.05 1 No Yes 5 5 2 2
R:R:I186 R:R:P168 3.39 1 Yes No 5 5 2 2
R:R:P168 R:R:Y190 15.3 1 No Yes 5 7 2 1
R:R:W172 R:R:Y190 13.5 1 Yes Yes 5 7 2 1
R:R:F281 R:R:L182 9.74 1 Yes No 4 4 1 2
R:R:F183 R:R:I186 3.77 1 Yes Yes 6 5 1 2
R:R:F183 R:R:M265 4.98 1 Yes Yes 6 6 1 2
R:R:F183 R:R:F281 5.36 1 Yes Yes 6 4 1 1
L:L:?1 R:R:F183 27.82 1 Yes Yes 0 6 0 1
L:L:?1 R:R:P184 7.9 1 Yes Yes 0 5 0 1
R:R:I186 R:R:Y190 9.67 1 Yes Yes 5 7 2 1
L:L:?1 R:R:Y190 3.52 1 Yes Yes 0 7 0 1
R:R:I198 R:R:W194 16.44 1 No Yes 7 5 2 1
R:R:M265 R:R:W194 4.65 0 Yes Yes 6 5 2 1
L:L:?1 R:R:W194 19.85 1 Yes Yes 0 5 0 1
R:R:F281 R:R:V261 3.93 1 Yes No 4 6 1 2
R:R:F281 R:R:L264 4.87 1 Yes No 4 4 1 2
L:L:?1 R:R:F281 11.71 1 Yes Yes 0 4 0 1
R:R:C288 R:R:S285 3.44 0 No No 7 5 2 1
L:L:?1 R:R:S285 9.93 1 Yes No 0 5 0 1
R:R:S112 R:R:V113 1.62 0 No No 4 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8GUS_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.35
Number of Linked Nodes 268
Number of Links 295
Number of Hubs 39
Number of Links mediated by Hubs 145
Number of Communities 7
Number of Nodes involved in Communities 47
Number of Links involved in Communities 65
Path Summary
Number Of Nodes in MetaPath 95
Number Of Links MetaPath 94
Number of Shortest Paths 45789
Length Of Smallest Path 3
Average Path Length 13.244
Length of Longest Path 31
Minimum Path Strength 1.38
Average Path Strength 6.28002
Maximum Path Strength 21.37
Minimum Path Correlation 0.7
Average Path Correlation 0.92925
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 52.346
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.5203
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeKO3
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeKO3
NameOnternabez
Synonyms
  • Onternabez
  • [(1S,2S,5S)-2-[2,6-dimethoxy-4-(2-methyloctan-2-yl)phenyl]-6,6-dimethyl-4-bicyclo[3.1.1]hept-3-enyl]methanol
Identifier
FormulaC27 H42 O3
Molecular Weight414.621
SMILES
PubChem11553430
Formal Charge0
Total Atoms72
Total Chiral Atoms3
Total Bonds74
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP34972
Sequence
>8GUS_nogp_Chain_R
PMKDYMILS GPQKTAVAV LCTLLGLLS ALENVAVLY LILSSHQLR 
RKPSYLFIG SLAGADFLA SVVFACSFV NFHVFHGVD SKAVFLLKI 
GSVTMTFTA SVGSLLLTA IDRYLCLRY PPSYKALLT RGRALVTLG 
IMWVLSALV SYLPLMGWT CCPRPCSEL FPLIPNDYL LSWLLFIAF 
LFSGIIYTY GHVLWKAHQ HVASLSGHQ MRLDVRLAK TLGLVLAVL 
LICWFPVLA LMAHSLATT LSDQVKKAF AFCSMLCLI NSMVNPVIY 
ALRSGEIRS SAHHCLAHW KK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5ZTYALipidCannabinoidCB2Homo sapiensAM10257--2.82019-01-30doi.org/10.1016/j.cell.2018.12.011
6KPCALipidCannabinoidCB2Homo sapiensAM12033--3.22020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPFALipidCannabinoidCB2Homo sapiensAM12033-Gi1/β1/γ22.92020-02-12doi.org/10.1016/j.cell.2020.01.008
6KPF (No Gprot) ALipidCannabinoidCB2Homo sapiensAM12033-2.92020-02-12doi.org/10.1016/j.cell.2020.01.008
6PT0ALipidCannabinoidCB2Homo sapiensWIN 55212-2-Gi1/β1/γ23.22020-02-12doi.org/10.1016/j.cell.2020.01.007
6PT0 (No Gprot) ALipidCannabinoidCB2Homo sapiensWIN 55212-2-3.22020-02-12doi.org/10.1016/j.cell.2020.01.007
8GUQALipidCannabinoidCB2Homo sapiensOlorinab-Gi1/β1/γ23.082023-05-10doi.org/10.1038/s41467-023-37112-9
8GUQ (No Gprot) ALipidCannabinoidCB2Homo sapiensOlorinab-3.082023-05-10doi.org/10.1038/s41467-023-37112-9
8GURALipidCannabinoidCB2Homo sapiensCP55940-Gi1/β1/γ22.842023-05-10doi.org/10.1038/s41467-023-37112-9
8GUR (No Gprot) ALipidCannabinoidCB2Homo sapiensCP55940-2.842023-05-10doi.org/10.1038/s41467-023-37112-9
8GUSALipidCannabinoidCB2Homo sapiensHU-308-Gi1/β1/γ22.972023-05-10doi.org/10.1038/s41467-023-37112-9
8GUS (No Gprot) ALipidCannabinoidCB2Homo sapiensHU-308-2.972023-05-10doi.org/10.1038/s41467-023-37112-9
8GUTALipidCannabinoidCB2Homo sapiensLEI-102-Gi1/β1/γ22.982023-05-10doi.org/10.1038/s41467-023-37112-9
8GUT (No Gprot) ALipidCannabinoidCB2Homo sapiensLEI-102-2.982023-05-10doi.org/10.1038/s41467-023-37112-9
8X3LALipidCannabinoidCB2Homo sapiensXWD-Gi1/β1/γ23.132024-11-20doi.org/10.1073/pnas.2401091121
8X3L (No Gprot) ALipidCannabinoidCB2Homo sapiensXWD-3.132024-11-20doi.org/10.1073/pnas.2401091121




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8GUS_nogp.zip



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