Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F25 10.836516
2R:R:Q27 9.075414
3R:R:Q31 9.9325412
4R:R:W55 5.8275404
5R:R:V66 6.5325436
6R:R:F70 8.53407
7R:R:N73 8.25409
8R:R:E78 8.652529
9R:R:M81 4.5925447
10R:R:N85 7.04516
11R:R:N89 8.324516
12R:R:N96 10.4525404
13R:R:W98 7.88571718
14R:R:Y100 13.6975417
15R:R:Y104 11.165415
16R:R:H108 11.9225415
17R:R:I113 6.9775455
18R:R:Y131 8.7475468
19R:R:I135 9.6725467
20R:R:H136 4.532566
21R:R:R141 7.6325435
22R:R:T147 7.1525437
23R:R:W155 6.41409
24R:R:Q165 9.5375456
25R:R:R177 9.664502
26R:R:C180 6.15419
27R:R:W184 11.3525405
28R:R:Y196 10.112506
29R:R:Y205 7.7775408
30R:R:Y216 7.63667609
31R:R:V219 4.465408
32R:R:M250 8.155408
33R:R:F257 5.94409
34R:R:W261 6.49167648
35R:R:F264 8.64407
36R:R:H265 7.725407
37R:R:F267 9.702504
38R:R:N274 5.22404
39R:R:Q284 9.696514
40R:R:Q285 7.7225411
41R:R:Y287 8.862515
42R:R:F312 9.398509
43R:R:F316 5.2375406
44L:L:F7 10.545410
45L:L:F8 11.3525400
46L:L:L10 6.4825410
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:Q284 R:R:Q285 16.934110.24YesYes141
2R:R:Q285 R:R:W35 11.62616.57YesNo014
3L:L:F7 R:R:Y287 53.46029.28YesYes105
4R:R:F267 R:R:Y287 83.16210.32YesYes045
5R:R:F267 R:R:F268 50.01775.36YesNo046
6R:R:F264 R:R:F268 64.582612.86YesNo076
7R:R:F264 R:R:W261 10011.02YesYes078
8R:R:M81 R:R:W261 96.38034.65YesYes478
9R:R:M81 R:R:T298 95.69186.02YesNo079
10R:R:F267 R:R:I290 44.07438.79YesNo046
11R:R:F264 R:R:I290 44.80335.02YesNo076
12R:R:E78 R:R:T298 91.039311.29YesNo099
13R:R:E78 R:R:N301 85.037711.83YesNo299
14R:R:N301 R:R:Y305 84.6534.65NoNo099
15R:R:F312 R:R:Y305 24.373519.6YesNo099
16R:R:F312 R:R:V53 16.99245.24YesNo098
17R:R:F316 R:R:V53 15.04833.93YesNo068
18R:R:L71 R:R:Y305 64.61558.21NoNo089
19R:R:L71 R:R:N68 25.85945.49NoNo088
20R:R:N68 R:R:T65 25.98345.85NoNo087
21R:R:T65 R:R:T67 24.99624.71NoNo078
22R:R:R141 R:R:T67 23.99643.88YesNo058
23R:R:R141 R:R:T147 14.686410.35YesYes357
24R:R:L71 R:R:R130 45.29194.86NoNo089
25L:L:F7 R:R:N96 26.218810.87YesYes004
26R:R:N96 R:R:Y92 10.069411.63YesNo044
27R:R:W98 R:R:Y92 13.868812.54YesNo084
28R:R:N89 R:R:Y287 28.44638.14YesYes165
29L:L:L10 R:R:N89 19.80716.87YesYes106
30L:L:F8 R:R:N96 12.73989.67YesYes004
31R:R:T171 R:R:W98 12.8363.64NoYes058
32R:R:W184 R:R:Y168 19.89824.82YesNo055
33R:R:I182 R:R:W184 12.053912.92NoYes045
34R:R:I182 R:R:Q165 12.76018.23NoYes046
35L:L:M11 R:R:Q165 23.83948.16NoYes506
36L:L:M11 R:R:F268 32.89379.95NoNo006
37R:R:W184 R:R:Y196 12.22613.5YesYes056
38R:R:Q165 R:R:Y196 17.199913.53YesYes066
39R:R:F264 R:R:H265 15.185.66YesYes077
40R:R:R130 R:R:Y216 43.697211.32NoYes099
41R:R:V219 R:R:Y131 14.01563.79YesYes088
42R:R:M250 R:R:V219 27.15796.09YesYes088
43R:R:M250 R:R:Y216 33.754419.16YesYes089
44R:R:P185 R:R:Y168 12.314615.3NoNo045
45R:R:F267 R:R:Y278 11.69716.5YesNo042
46R:R:L142 R:R:T147 10.8064.42NoYes067
47L:L:F7 R:R:Q284 26.3537.03YesYes104
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F25 R:R:N23 8.46 1 Yes No 6 8 1 2
R:R:N23 R:R:R177 14.46 0 No Yes 8 2 2 2
R:R:F25 R:R:Q24 14.05 1 Yes No 6 3 1 2
R:R:K281 R:R:Q24 5.42 1 No No 2 3 2 2
R:R:F25 R:R:K281 4.96 1 Yes No 6 2 1 2
R:R:F25 R:R:Q284 11.71 1 Yes Yes 6 4 1 1
L:L:F7 R:R:F25 15 1 Yes Yes 0 6 0 1
R:R:Q27 R:R:Q284 14.08 1 Yes Yes 4 4 2 1
R:R:Q27 R:R:Q285 7.68 1 Yes Yes 4 1 2 2
R:R:N85 R:R:N89 5.45 1 Yes Yes 6 6 1 1
R:R:H108 R:R:N85 7.65 1 Yes Yes 5 6 2 1
R:R:N85 R:R:P112 4.89 1 Yes No 6 6 1 2
R:R:M295 R:R:N85 7.01 0 No Yes 7 6 2 1
L:L:?12 R:R:N85 10.2 0 No Yes 0 6 0 1
R:R:H108 R:R:N89 12.75 1 Yes Yes 5 6 2 1
R:R:N89 R:R:Y287 8.14 1 Yes Yes 6 5 1 1
R:R:M291 R:R:N89 8.41 1 No Yes 5 6 2 1
L:L:L10 R:R:N89 6.87 1 Yes Yes 0 6 0 1
R:R:N96 R:R:Y92 11.63 0 Yes No 4 4 1 1
R:R:W98 R:R:Y92 12.54 1 Yes No 8 4 2 1
L:L:L10 R:R:Y92 4.69 1 Yes No 0 4 0 1
R:R:N96 R:R:R177 9.64 0 Yes Yes 4 2 1 2
L:L:F7 R:R:N96 10.87 1 Yes Yes 0 4 0 1
L:L:F8 R:R:N96 9.67 0 Yes Yes 0 4 0 1
R:R:C105 R:R:W98 5.22 1 No Yes 9 8 2 2
R:R:C180 R:R:W98 7.84 1 Yes Yes 9 8 1 2
R:R:C105 R:R:C180 7.28 1 No Yes 9 9 2 1
R:R:H108 R:R:P112 10.68 1 Yes No 5 6 2 2
R:R:N109 R:R:S169 5.96 1 No No 5 5 1 2
R:R:C180 R:R:N109 4.72 1 Yes No 9 5 1 1
L:L:L10 R:R:N109 9.61 1 Yes No 0 5 0 1
R:R:I113 R:R:Q165 8.23 5 Yes Yes 5 6 1 1
L:L:M11 R:R:I113 5.83 5 No Yes 0 5 0 1
L:L:?12 R:R:I113 10.6 0 No Yes 0 5 0 1
R:R:I182 R:R:Q165 8.23 0 No Yes 4 6 2 1
R:R:Q165 R:R:Y196 13.53 5 Yes Yes 6 6 1 2
L:L:M11 R:R:Q165 8.16 5 No Yes 0 6 0 1
R:R:E172 R:R:M174 5.41 0 No No 3 1 2 1
R:R:M174 R:R:P175 5.03 0 No No 1 2 1 2
R:R:R177 R:R:V179 6.54 0 Yes No 2 3 2 1
L:L:F8 R:R:V179 11.8 0 Yes No 0 3 0 1
L:L:L10 R:R:C180 4.76 1 Yes Yes 0 9 0 1
L:L:F8 R:R:M181 8.71 0 Yes No 0 4 0 1
R:R:F264 R:R:F268 12.86 0 Yes No 7 6 2 1
R:R:F267 R:R:F268 5.36 0 Yes No 4 6 2 1
R:R:F267 R:R:Y287 10.32 0 Yes Yes 4 5 2 1
L:L:M11 R:R:F268 9.95 5 No No 0 6 0 1
L:L:Q5 R:R:L279 7.99 0 No No 0 2 0 1
R:R:K281 R:R:Q284 5.42 1 No Yes 2 4 2 1
R:R:Q284 R:R:Q285 10.24 1 Yes Yes 4 1 1 2
L:L:F7 R:R:Q284 7.03 1 Yes Yes 0 4 0 1
R:R:M291 R:R:Y287 10.78 1 No Yes 5 5 2 1
L:L:F7 R:R:Y287 9.28 1 Yes Yes 0 5 0 1
L:L:G9 R:R:Y287 5.79 0 No Yes 0 5 0 1
R:R:M291 R:R:M295 5.78 1 No No 5 7 2 2
L:L:P4 R:R:M174 3.35 0 No No 0 1 0 1
R:R:A162 R:R:I113 3.25 0 No Yes 7 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7P02_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 4.58
Number of Linked Nodes 288
Number of Links 318
Number of Hubs 46
Number of Links mediated by Hubs 160
Number of Communities 6
Number of Nodes involved in Communities 39
Number of Links involved in Communities 52
Path Summary
Number Of Nodes in MetaPath 48
Number Of Links MetaPath 47
Number of Shortest Paths 68229
Length Of Smallest Path 3
Average Path Length 15.3057
Length of Longest Path 35
Minimum Path Strength 1.595
Average Path Strength 8.05775
Maximum Path Strength 22.175
Minimum Path Correlation 0.7
Average Path Correlation 0.926466
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 43.3933
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.533
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?12
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25103
Sequence
>7P02_nogp_Chain_R
PNQFVQPAW QIVLWAAAY TVIVVTSVV GNVVVMWII LAHKRMRTV 
TNYFLVNLA FAEASMAAF NTVVNFTYA VHNEWYYGL FYCKFHNFF 
PIAAVFASI YSMTAVAFD RYMAIIHPL QPRLSATAT KVVICVIWV 
LALLLAFPQ GYYSTTETM PSRVVCMIE WPEHPNKIY EKVYHICVT 
VLIYFLPLL VIGYAYTVV GITLWAHEQ VSAKRKVVK MMIVVVCTF 
AICWLPFHI FFLLPYINP DLYLKKFIQ QVYLAIMWL AMSSTMYNP 
IIYCCLNDR FRLGFKHA


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8U26APeptideTachykininNK1Homo sapiensProtachykinin-1-Gs/β1/γ22.52023-11-1510.1038/s41592-023-02082-9
8U26 (No Gprot) APeptideTachykininNK1Homo sapiensProtachykinin-1-2.52023-11-1510.1038/s41592-023-02082-9
7P00APeptideTachykininNK1Homo sapiensSubstance-P-chim(NtGi1-Gs-CtGq)/β1/γ22.712021-12-1510.1126/sciadv.abk2872
7P00 (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-2.712021-12-1510.1126/sciadv.abk2872
7P02APeptideTachykininNK1Homo sapiensProtachykinin-1-chim(NtGi1-Gs)/β1/γ22.872021-12-1510.1126/sciadv.abk2872
7P02 (No Gprot) APeptideTachykininNK1Homo sapiensProtachykinin-1-2.872021-12-1510.1126/sciadv.abk2872
7RMIAPeptideTachykininNK1Homo sapiensSubstance-P-chim(Gs-CtGq)/β1/γ23.22021-11-0310.1038/s41589-021-00890-8
7RMI (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-3.22021-11-0310.1038/s41589-021-00890-8
7RMGAPeptideTachykininNK1Homo sapiensSubstance-P-chim(Gs-CtGq)/β1/γ232021-11-0310.1038/s41589-021-00890-8
7RMG (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-32021-11-0310.1038/s41589-021-00890-8
7RMHAPeptideTachykininNK1Homo sapiensSubstance-P-Gs/β1/γ23.12021-11-0310.1038/s41589-021-00890-8
7RMH (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-3.12021-11-0310.1038/s41589-021-00890-8
6J21APeptideTachykininNK1Homo sapiensAprepitant--3.22019-03-0610.1038/s41467-019-08568-5
6J20APeptideTachykininNK1Homo sapiensAprepitant--2.72019-03-0610.1038/s41467-019-08568-5
6HLPAPeptideTachykininNK1Homo sapiensNetupitant--2.22019-01-1610.1038/s41467-018-07939-8
6HLOAPeptideTachykininNK1Homo sapiensAprepitant--2.42019-01-1610.1038/s41467-018-07939-8
6HLLAPeptideTachykininNK1Homo sapiensCP99994--3.272019-01-1610.1038/s41467-018-07939-8
6E59APeptideTachykininNK1Homo sapiensL-760735--3.42018-12-1210.1073/pnas.1812717115




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Download 7P02_nogp.zip



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