Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:F7 8.595410
2R:R:F25 8.646516
3R:R:W35 6.7425444
4R:R:W55 5.205404
5R:R:I56 3.385408
6R:R:F70 5.6175407
7R:R:L74 5.98409
8R:R:E78 5.41409
9R:R:M81 5.7925407
10R:R:N89 8.33426
11R:R:N96 7.185414
12R:R:W98 10.2558
13R:R:Y100 8.6375407
14R:R:C105 4.935459
15R:R:H108 8.3275425
16R:R:F111 5.445404
17R:R:I113 5.2175435
18R:R:F117 6.9425407
19R:R:R130 3.735409
20R:R:Y131 4.705408
21R:R:H136 4.9475406
22R:R:Q165 7.6075436
23R:R:M174 6.2411
24R:R:R177 6.5425412
25R:R:W184 8.816505
26R:R:K194 3.3375403
27R:R:Y196 8.7525406
28R:R:Y205 6.125408
29R:R:Y216 6.23833669
30R:R:M249 2.555408
31R:R:M250 5.85408
32R:R:W261 7.0275478
33R:R:F264 8.1275477
34R:R:F267 6.014584
35R:R:Y278 7.28482
36R:R:Q284 9.195414
37R:R:Y287 5.90667605
38R:R:W292 5.0375405
39R:R:F312 4.415409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:F7 R:R:F25 12.89798.57YesYes106
2R:R:F25 R:R:R177 11.80656.41YesYes162
3R:R:R177 R:R:V179 11.95433.92YesNo123
4L:L:F7 R:R:N96 26.21088.46YesYes104
5R:R:N96 R:R:R177 11.90889.64YesYes142
6L:L:F7 R:R:Y287 56.73610.32YesYes005
7R:R:N96 R:R:Y92 19.48045.81YesNo044
8R:R:F267 R:R:Y287 47.16357.22YesYes045
9R:R:F267 R:R:F268 25.79585.36YesNo046
10L:L:M11 R:R:F268 41.069811.2NoNo006
11L:L:M11 R:R:I113 12.61944.37NoYes305
12L:L:M11 R:R:Q165 27.51255.44NoYes306
13R:R:N89 R:R:Y287 16.80314.65YesYes065
14R:R:Q27 R:R:Q284 22.021412.8NoYes044
15R:R:Q27 R:R:Q285 20.54347.68NoNo041
16R:R:Q285 R:R:W35 12.66484.38NoYes414
17R:R:L288 R:R:W35 14.807912.53NoYes034
18R:R:L288 R:R:Y39 14.51234.69NoNo037
19R:R:F90 R:R:Y39 15.626418.57NoNo067
20R:R:F90 R:R:V94 11.71567.87NoNo065
21R:R:W292 R:R:Y39 16.05286.75YesNo057
22R:R:M291 R:R:Y287 43.46294.79NoYes055
23R:R:M291 R:R:M295 64.8594.33NoNo057
24R:R:M295 R:R:M81 64.39865.78NoYes077
25R:R:M81 R:R:T298 31.50863.01YesNo079
26R:R:M299 R:R:T298 253.01NoNo079
27R:R:I42 R:R:M299 22.33974.37NoNo077
28R:R:I42 R:R:W292 21.10055.87NoYes075
29R:R:E78 R:R:M81 67.59326.77YesYes097
30R:R:E78 R:R:L74 65.46165.3YesYes099
31R:R:L74 R:R:S122 64.36457.51YesNo098
32R:R:N73 R:R:S122 64.30764.47NoNo098
33R:R:I151 R:R:N73 1009.91NoNo089
34R:R:F70 R:R:I151 99.28385.02YesNo078
35R:R:F70 R:R:T147 97.04413.89YesNo077
36R:R:R141 R:R:T147 93.85523.88NoNo057
37R:R:R141 R:R:T67 91.4625.17NoNo058
38R:R:N68 R:R:T67 89.77387.31NoNo088
39R:R:M63 R:R:N68 88.83587.01NoNo078
40R:R:M63 R:R:R311 88.04576.2NoNo076
41R:R:N309 R:R:R311 87.306713.26NoNo086
42R:R:F312 R:R:N309 86.40867.25YesNo098
43R:R:F312 R:R:I57 20.44113.77YesNo097
44R:R:I57 R:R:V53 12.76153.07NoNo078
45R:R:F312 R:R:I56 20.55482.51YesYes098
46R:R:I56 R:R:W55 14.39863.52YesYes084
47R:R:F312 R:R:Y305 57.9074.13YesNo099
48R:R:N85 R:R:P112 11.05054.89NoNo066
49R:R:F111 R:R:P112 10.72085.78YesNo046
50R:R:F111 R:R:S80 21.0555.28YesNo046
51R:R:F76 R:R:S80 20.81637.93NoNo066
52R:R:F76 R:R:W155 21.2715.01NoNo069
53R:R:W98 R:R:Y92 18.843813.5YesNo084
54R:R:W98 R:R:Y100 12.841116.4YesYes087
55R:R:Y100 R:R:Y104 13.43227.94YesNo075
56R:R:F107 R:R:Y104 13.00596.19NoNo045
57R:R:F107 R:R:F111 13.20496.43NoYes044
58R:R:C105 R:R:W98 14.18263.92YesYes598
59R:R:Q165 R:R:Y196 16.723511.27YesYes066
60R:R:P164 R:R:Y196 17.5255.56NoYes086
61R:R:F163 R:R:P164 17.08164.33NoNo048
62R:R:F110 R:R:F163 24.82385.36NoNo064
63R:R:F110 R:R:L159 24.59646.09NoNo064
64R:R:F117 R:R:I113 10.3575.02YesYes075
65R:R:A118 R:R:W155 26.83617.78NoNo079
66R:R:A118 R:R:A158 25.85271.79NoNo078
67R:R:A114 R:R:A158 25.11371.79NoNo058
68R:R:A114 R:R:L159 24.70444.73NoNo054
69R:R:F117 R:R:I204 11.442715.07YesNo076
70R:R:R130 R:R:Y305 55.42864.12YesNo099
71R:R:R130 R:R:Y216 50.65943.09YesYes099
72R:R:M250 R:R:Y216 36.505215.57YesYes089
73R:R:M250 R:R:V219 25.33544.56YesNo088
74R:R:V219 R:R:Y131 19.29852.52NoYes088
75R:R:I135 R:R:Y131 13.04577.25NoYes078
76R:R:I182 R:R:Q165 12.05665.49NoYes046
77R:R:I182 R:R:W184 11.30639.4NoYes045
78R:R:W184 R:R:Y168 13.91544.82YesNo055
79R:R:Y167 R:R:Y168 10.578712.91NoNo045
80R:R:W184 R:R:Y196 19.656710.61YesYes056
81R:R:F267 R:R:Y278 20.44116.19YesYes842
82R:R:P271 R:R:Y278 12.43189.74NoYes042
83R:R:P271 R:R:Y272 11.44844.17NoNo045
84R:R:E193 R:R:W184 10.879916.36NoYes045
85R:R:W184 R:R:Y192 30.0082.89YesNo054
86R:R:H187 R:R:Y192 26.87027.62NoNo024
87R:R:H187 R:R:I191 20.21947.95NoNo021
88R:R:I191 R:R:K194 16.8772.91NoYes013
89R:R:F264 R:R:M291 37.86386.22YesNo075
90R:R:F264 R:R:W261 23.942710.02YesYes778
91R:R:F257 R:R:W261 21.24838.02NoYes098
92R:R:F257 R:R:L209 12.75587.31NoNo096
93R:R:L209 R:R:Y205 10.62984.69NoYes068
94L:L:F7 R:R:Q284 23.00487.03YesYes104
95R:R:N73 R:R:W155 42.46257.91NoNo099
96R:R:F264 R:R:F268 19.770310.72YesNo076
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:F7 R:R:F25 8.57 1 Yes Yes 0 6 0 1
L:L:F7 R:R:N96 8.46 1 Yes Yes 0 4 0 1
L:L:F7 R:R:Q284 7.03 1 Yes Yes 0 4 0 1
L:L:F7 R:R:Y287 10.32 1 Yes Yes 0 5 0 1
L:L:F8 R:R:V179 6.55 0 No No 0 3 0 1
L:L:F8 R:R:M181 7.46 0 No No 0 4 0 1
L:L:G9 R:R:Y287 5.79 0 No Yes 0 5 0 1
L:L:L10 R:R:Y92 4.69 0 No No 0 4 0 1
L:L:L10 R:R:H108 5.14 0 No Yes 0 5 0 1
L:L:M11 R:R:I113 4.37 3 No Yes 0 5 0 1
L:L:M11 R:R:Q165 5.44 3 No Yes 0 6 0 1
L:L:M11 R:R:F268 11.2 3 No No 0 6 0 1
L:L:?12 R:R:N85 10.2 2 No No 0 6 0 1
L:L:?12 R:R:N89 10.2 2 No Yes 0 6 0 1
L:L:?12 R:R:H108 9.55 2 No Yes 0 5 0 1
R:R:F25 R:R:Q24 10.54 1 Yes No 6 3 1 2
R:R:K281 R:R:Q24 8.14 0 No No 2 3 2 2
R:R:F25 R:R:N96 4.83 1 Yes Yes 6 4 1 1
R:R:F25 R:R:R177 6.41 1 Yes Yes 6 2 1 2
R:R:F25 R:R:Q284 12.88 1 Yes Yes 6 4 1 1
R:R:Q27 R:R:Q284 12.8 0 No Yes 4 4 2 1
R:R:N85 R:R:N89 9.54 2 No Yes 6 6 1 1
R:R:N85 R:R:P112 4.89 2 No No 6 6 1 2
R:R:H108 R:R:V88 9.69 2 Yes No 5 5 1 2
R:R:H108 R:R:N89 8.93 2 Yes Yes 5 6 1 1
R:R:N89 R:R:Y287 4.65 2 Yes Yes 6 5 1 1
R:R:N96 R:R:Y92 5.81 1 Yes No 4 4 1 1
R:R:W98 R:R:Y92 13.5 5 Yes No 8 4 2 1
R:R:N96 R:R:R177 9.64 1 Yes Yes 4 2 1 2
R:R:F117 R:R:I113 5.02 0 Yes Yes 7 5 2 1
R:R:I113 R:R:Q165 8.23 3 Yes Yes 5 6 1 1
R:R:I182 R:R:Q165 5.49 0 No Yes 4 6 2 1
R:R:Q165 R:R:Y196 11.27 3 Yes Yes 6 6 1 2
R:R:M174 R:R:R177 6.2 1 Yes Yes 1 2 2 2
R:R:M174 R:R:V179 6.09 1 Yes No 1 3 2 1
R:R:R177 R:R:V179 3.92 1 Yes No 2 3 2 1
R:R:F264 R:R:F268 10.72 7 Yes No 7 6 2 1
R:R:F264 R:R:M291 6.22 7 Yes No 7 5 2 2
R:R:F267 R:R:F268 5.36 8 Yes No 4 6 2 1
R:R:F267 R:R:Y287 7.22 8 Yes Yes 4 5 2 1
R:R:K281 R:R:Q284 4.07 0 No Yes 2 4 2 1
R:R:M291 R:R:Y287 4.79 0 No Yes 5 5 2 1
R:R:A162 R:R:I113 3.25 0 No Yes 7 5 2 1
R:R:A93 R:R:Y287 2.67 0 No Yes 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7RMI_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.88
Number of Linked Nodes 272
Number of Links 290
Number of Hubs 39
Number of Links mediated by Hubs 138
Number of Communities 8
Number of Nodes involved in Communities 29
Number of Links involved in Communities 33
Path Summary
Number Of Nodes in MetaPath 97
Number Of Links MetaPath 96
Number of Shortest Paths 41744
Length Of Smallest Path 3
Average Path Length 16.4924
Length of Longest Path 37
Minimum Path Strength 1.365
Average Path Strength 6.4534
Maximum Path Strength 15.385
Minimum Path Correlation 0.7
Average Path Correlation 0.923273
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.125
Average % Of Corr. Nodes 43.2628
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.5722
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?12
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainL
ProteinSubstance-P
UniProtP20366
Sequence
>7RMI_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtP25103
Sequence
>7RMI_nogp_Chain_R
NQFVQPAWQ IVLWAAAYT VIVVTSVVG NVVVMWIIL AHKRMRTVT 
NYFLVNLAF AEASMAAFN TVVNFTYAV HNEWYYGLF YCKFHNFFP 
IAAVFASIY SMTAVAFDR YMAIIHPLQ PRLSATATK VVICVIWVL 
ALLLAFPQG YYSTTETMP SRVVCMIEW PEHPNKIYE KVYHICVTV 
LIYFLPLLV IGYAYTVVG ITLWEQVSA KRKVVKMMI VVVCTFAIC 
WLPFHIFFL LPYINPDLY LKKFIQQVY LAIMWLAMS STMYNPIIY 
CCLNDRFRL GFKHAF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6E59APeptideTachykininNK1Homo sapiensL-760735--3.42018-12-12doi.org/10.1073/pnas.1812717115
6HLLAPeptideTachykininNK1Homo sapiensCP99994--3.272019-01-16doi.org/10.1038/s41467-018-07939-8
6HLOAPeptideTachykininNK1Homo sapiensAprepitant--2.42019-01-16doi.org/10.1038/s41467-018-07939-8
6HLPAPeptideTachykininNK1Homo sapiensNetupitant--2.22019-01-16doi.org/10.1038/s41467-018-07939-8
6J20APeptideTachykininNK1Homo sapiensAprepitant--2.72019-03-06doi.org/10.1038/s41467-019-08568-5
6J21APeptideTachykininNK1Homo sapiensAprepitant--3.22019-03-06doi.org/10.1038/s41467-019-08568-5
7RMGAPeptideTachykininNK1Homo sapiensSubstance-P-chim(Gs-CtGq)/β1/γ232021-11-03doi.org/10.1038/s41589-021-00890-8
7RMG (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-32021-11-03doi.org/10.1038/s41589-021-00890-8
7RMHAPeptideTachykininNK1Homo sapiensSubstance-P-Gs/β1/γ23.12021-11-03doi.org/10.1038/s41589-021-00890-8
7RMH (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-3.12021-11-03doi.org/10.1038/s41589-021-00890-8
7RMIAPeptideTachykininNK1Homo sapiensSubstance-P-chim(Gs-CtGq)/β1/γ23.22021-11-03doi.org/10.1038/s41589-021-00890-8
7RMI (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-3.22021-11-03doi.org/10.1038/s41589-021-00890-8
7P00APeptideTachykininNK1Homo sapiensSubstance-P-chim(NtGi1-Gs-CtGq)/β1/γ22.712021-12-15doi.org/10.1126/sciadv.abk2872
7P00 (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-2.712021-12-15doi.org/10.1126/sciadv.abk2872
7P02APeptideTachykininNK1Homo sapiensSubstance-P-chim(NtGi1-Gs)/β1/γ22.872021-12-15doi.org/10.1126/sciadv.abk2872
7P02 (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-2.872021-12-15doi.org/10.1126/sciadv.abk2872
8U26APeptideTachykininNK1Homo sapiensSubstance-P-Gs/β1/γ22.52023-11-15doi.org/10.1038/s41592-023-02082-9
8U26 (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-2.52023-11-15doi.org/10.1038/s41592-023-02082-9




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Download 7RMI_nogp.zip



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