Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:M11 6.732510
2L:L:?12 6.738510
3R:R:Q31 8.095432
4R:R:W35 7.225414
5R:R:Y39 7.128517
6R:R:W55 5.2375404
7R:R:F70 6.632507
8R:R:E78 7.0375409
9R:R:N85 6.84416
10R:R:N89 6.96516
11R:R:Y92 6.4775424
12R:R:N96 7.5025404
13R:R:W98 8.47167628
14R:R:H108 8.088515
15R:R:P112 4.96416
16R:R:I113 4.8975415
17R:R:F117 7.782517
18R:R:I120 3.445417
19R:R:R130 5.6525409
20R:R:I135 6.9175407
21R:R:H136 3.645406
22R:R:W155 5.93409
23R:R:Q165 8.1675416
24R:R:S169 5.52405
25R:R:R177 7.3325402
26R:R:W184 9.825405
27R:R:Y205 6.105408
28R:R:Y216 7.88167659
29R:R:V247 3.9775406
30R:R:M249 4.8725408
31R:R:M250 8.67408
32R:R:F257 5.715419
33R:R:W261 6.125418
34R:R:F264 7.604517
35R:R:H265 6.9225407
36R:R:F267 5.152514
37R:R:Y272 9.2225405
38R:R:Q284 7.69504
39R:R:Y287 6.348515
40R:R:M291 4.53415
41R:R:W292 7.3525405
42R:R:F312 5.216509
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:Q5 R:R:Q24 10.91057.68NoNo003
2R:R:F25 R:R:Q24 14.527214.05NoNo063
3R:R:F25 R:R:N96 16.54639.67NoYes064
4R:R:N96 R:R:R177 37.14717.23YesYes042
5R:R:R177 R:R:V179 24.12453.92YesNo023
6L:L:F8 R:R:V179 21.48726.55NoNo003
7L:L:F8 L:L:Q6 10.828418.74NoNo000
8L:L:F7 R:R:N96 30.32398.46NoYes004
9L:L:F7 R:R:Q284 22.73474.68NoYes004
10R:R:F25 R:R:Q284 11.156711.71NoYes064
11L:L:F7 R:R:Y287 44.21111.35NoYes005
12L:L:?12 L:L:L10 40.64893.43YesNo000
13L:L:L10 R:R:Y92 37.8314.69NoYes004
14R:R:N96 R:R:Y92 33.90794.65YesYes044
15L:L:L10 R:R:N109 15.621610.98NoNo005
16L:L:?12 L:L:M11 85.87223.5YesYes100
17L:L:M11 R:R:I113 24.66085.83YesYes105
18L:L:M11 R:R:Q165 26.35158.16YesYes106
19R:R:I182 R:R:N109 15.84595.66NoNo045
20R:R:I182 R:R:Q165 16.62845.49NoYes046
21R:R:F267 R:R:Y287 60.63145.16YesYes145
22R:R:F267 R:R:F268 61.95016.43YesNo146
23R:R:F264 R:R:F268 59.203313.93YesNo176
24L:L:M11 R:R:F264 73.58833.73YesYes107
25L:L:?12 R:R:H108 11.62186.36YesYes105
26R:R:Q27 R:R:Q284 11.260712.8NoYes044
27R:R:H95 R:R:V94 10.30318.3NoNo055
28R:R:M291 R:R:Y287 35.47284.79YesYes155
29R:R:M291 R:R:Y39 52.85624.79YesYes157
30R:R:F90 R:R:Y39 16.354813.41NoYes067
31R:R:W292 R:R:Y39 28.1797.72YesYes057
32R:R:I42 R:R:W292 22.171212.92NoYes075
33R:R:I42 R:R:M299 20.31085.83NoNo077
34R:R:M291 R:R:M295 35.56034.33YesNo057
35R:R:M295 R:R:T86 31.48949.03NoNo077
36R:R:T86 R:R:V43 29.90814.76NoNo076
37R:R:M299 R:R:S46 16.71594.6NoNo078
38R:R:S46 R:R:T298 10.63147.99NoNo489
39R:R:F264 R:R:W261 1008.02YesYes178
40R:R:I120 R:R:W261 87.41523.52YesYes178
41R:R:I120 R:R:P208 88.63543.39YesNo079
42R:R:P208 R:R:T124 85.1393.5NoNo097
43R:R:I212 R:R:T124 82.93949.12NoNo087
44R:R:I212 R:R:Y216 80.47173.63NoYes589
45R:R:R130 R:R:Y216 38.0289.26YesYes099
46R:R:R130 R:R:Y305 37.37693.09YesNo099
47R:R:F312 R:R:Y305 33.28967.22YesNo099
48R:R:V43 R:R:V44 28.72071.6NoNo064
49R:R:V44 R:R:V48 26.37891.6NoNo044
50R:R:V48 R:R:V52 28.91771.6NoNo046
51R:R:A319 R:R:V52 23.90023.39NoNo046
52R:R:A319 R:R:W55 22.80043.89NoYes044
53R:R:H60 R:R:W55 20.26155.29NoYes054
54R:R:H60 R:R:I56 20.24516.63NoNo058
55R:R:F312 R:R:I56 21.4277.54YesNo098
56R:R:E78 R:R:T298 11.75867.06YesNo099
57R:R:F264 R:R:H265 69.30956.79YesYes077
58R:R:H265 R:R:I204 56.19393.98YesNo076
59R:R:I204 R:R:Y121 73.47343.63NoNo065
60R:R:I154 R:R:Y121 71.3344.84NoNo075
61R:R:I154 R:R:V150 69.23.07NoNo075
62R:R:F70 R:R:V150 67.05526.55YesNo075
63R:R:F70 R:R:I151 25.49255.02YesNo078
64R:R:I151 R:R:N73 23.19448.5NoNo089
65R:R:N73 R:R:W155 18.79519.04NoYes099
66R:R:F76 R:R:W155 12.92953.01NoYes069
67R:R:F117 R:R:I113 26.75095.02YesYes175
68R:R:F117 R:R:I204 23.730615.07YesNo076
69R:R:I182 R:R:W184 22.18768.22NoYes045
70R:R:W184 R:R:Y168 26.38434.82YesNo055
71R:R:Y167 R:R:Y168 20.52426.95NoNo045
72R:R:F163 R:R:Y167 17.89235.16NoNo044
73R:R:F110 R:R:F163 15.26599.65NoNo064
74R:R:F110 R:R:L159 12.6454.87NoNo064
75R:R:A114 R:R:L159 10.02953.15NoNo054
76R:R:F70 R:R:T147 26.46646.49YesNo077
77R:R:T147 R:R:Y69 14.51634.99NoNo075
78R:R:F312 R:R:N309 12.0653.62YesNo098
79R:R:D129 R:R:F70 14.41789.55NoYes097
80R:R:D129 R:R:R141 12.20735.96NoNo095
81R:R:W98 R:R:Y92 16.436912.54YesYes284
82R:R:M250 R:R:Y216 50.109422.75YesYes089
83R:R:M250 R:R:V219 48.17254.56YesNo088
84R:R:I135 R:R:V219 24.94533.07YesNo078
85R:R:H136 R:R:I135 12.66697.95YesYes067
86R:R:M249 R:R:R130 13.12653.72YesYes089
87R:R:M249 R:R:M250 12.79274.33YesYes088
88R:R:I134 R:R:V219 22.79497.68NoNo088
89R:R:I134 R:R:L223 20.89085.71NoNo088
90R:R:Q165 R:R:Y196 14.38513.53YesNo066
91R:R:W184 R:R:Y196 11.95017.72YesNo056
92R:R:F267 R:R:Y278 15.28784.13YesNo142
93R:R:P271 R:R:Y278 14.565511.13NoNo042
94R:R:H265 R:R:Y205 11.29358.71YesYes078
95R:R:L223 R:R:V247 14.74061.49NoYes086
96R:R:S297 R:R:W261 10.14454.94NoYes098
97R:R:V47 R:R:V48 11.04731.6NoNo064
98R:R:F90 R:R:V94 11.6717.87NoNo065
99L:L:?12 R:R:N89 45.85810.2YesYes106
100R:R:M291 R:R:N89 47.76214.21YesYes156
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:R1 R:R:E172 15.12 0 No No 0 3 0 1
L:L:Q5 R:R:Q24 7.68 0 No No 0 3 0 1
L:L:F7 R:R:N96 8.46 0 No Yes 0 4 0 1
L:L:F7 R:R:Q284 4.68 0 No Yes 0 4 0 1
L:L:F7 R:R:Y287 11.35 0 No Yes 0 5 0 1
L:L:F8 R:R:V179 6.55 0 No No 0 3 0 1
L:L:F8 R:R:M181 4.98 0 No No 0 4 0 1
L:L:G9 R:R:Y287 5.79 0 No Yes 0 5 0 1
L:L:L10 R:R:Y92 4.69 0 No Yes 0 4 0 1
L:L:L10 R:R:N109 10.98 0 No No 0 5 0 1
L:L:M11 R:R:I113 5.83 1 Yes Yes 0 5 0 1
L:L:M11 R:R:Q165 8.16 1 Yes Yes 0 6 0 1
L:L:M11 R:R:F264 3.73 1 Yes Yes 0 7 0 1
L:L:M11 R:R:F268 12.44 1 Yes No 0 6 0 1
L:L:?12 R:R:N85 10.2 1 Yes Yes 0 6 0 1
L:L:?12 R:R:N89 10.2 1 Yes Yes 0 6 0 1
L:L:?12 R:R:H108 6.36 1 Yes Yes 0 5 0 1
R:R:F25 R:R:Q24 14.05 0 No No 6 3 2 1
R:R:F25 R:R:N96 9.67 0 No Yes 6 4 2 1
R:R:F25 R:R:Q284 11.71 0 No Yes 6 4 2 1
R:R:Q27 R:R:Q284 12.8 0 No Yes 4 4 2 1
R:R:N85 R:R:N89 6.81 1 Yes Yes 6 6 1 1
R:R:H108 R:R:N85 3.83 1 Yes Yes 5 6 1 1
R:R:N85 R:R:P112 6.52 1 Yes Yes 6 6 1 2
R:R:H108 R:R:V88 15.22 1 Yes No 5 5 1 2
R:R:H108 R:R:N89 8.93 1 Yes Yes 5 6 1 1
R:R:N89 R:R:Y287 4.65 1 Yes Yes 6 5 1 1
R:R:M291 R:R:N89 4.21 1 Yes Yes 5 6 2 1
R:R:N96 R:R:Y92 4.65 0 Yes Yes 4 4 1 1
R:R:W98 R:R:Y92 12.54 2 Yes Yes 8 4 2 1
R:R:C180 R:R:Y92 4.03 2 No Yes 9 4 2 1
R:R:N96 R:R:R177 7.23 0 Yes Yes 4 2 1 2
R:R:C180 R:R:W98 11.75 2 No Yes 9 8 2 2
R:R:H108 R:R:P112 6.1 1 Yes Yes 5 6 1 2
R:R:N109 R:R:S169 8.94 0 No Yes 5 5 1 2
R:R:I182 R:R:N109 5.66 0 No No 4 5 2 1
R:R:F117 R:R:I113 5.02 1 Yes Yes 7 5 2 1
R:R:I113 R:R:Q165 5.49 1 Yes Yes 5 6 1 1
R:R:I182 R:R:Q165 5.49 0 No Yes 4 6 2 1
R:R:Q165 R:R:Y196 13.53 1 Yes No 6 6 1 2
R:R:R177 R:R:V179 3.92 0 Yes No 2 3 2 1
R:R:F264 R:R:W261 8.02 1 Yes Yes 7 8 1 2
R:R:F264 R:R:H265 6.79 1 Yes Yes 7 7 1 2
R:R:F264 R:R:F268 13.93 1 Yes No 7 6 1 1
R:R:A294 R:R:F264 5.55 0 No Yes 7 7 2 1
R:R:F267 R:R:F268 6.43 1 Yes No 4 6 2 1
R:R:F267 R:R:Y287 5.16 1 Yes Yes 4 5 2 1
R:R:K281 R:R:Q284 5.42 0 No Yes 2 4 2 1
R:R:Q284 R:R:Q285 3.84 0 Yes No 4 1 1 2
R:R:M291 R:R:Y287 4.79 1 Yes Yes 5 5 2 1
R:R:A162 R:R:I113 3.25 0 No Yes 7 5 2 1
R:R:E183 R:R:M181 2.71 0 No No 3 4 2 1
R:R:M181 R:R:T170 1.51 0 No No 4 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7RMG_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.39
Number of Linked Nodes 279
Number of Links 310
Number of Hubs 42
Number of Links mediated by Hubs 149
Number of Communities 5
Number of Nodes involved in Communities 37
Number of Links involved in Communities 49
Path Summary
Number Of Nodes in MetaPath 101
Number Of Links MetaPath 100
Number of Shortest Paths 56853
Length Of Smallest Path 3
Average Path Length 13.5439
Length of Longest Path 27
Minimum Path Strength 1.49
Average Path Strength 6.28841
Maximum Path Strength 20.745
Minimum Path Correlation 0.7
Average Path Correlation 0.926453
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 48.9031
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.9653
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?12
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainL
ProteinSubstance-P
UniProtP20366
Sequence
>7RMG_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtP25103
Sequence
>7RMG_nogp_Chain_R
EPNQFVQPA WQIVLWAAA YTVIVVTSV VGNVVVMWI ILAHKRMRT 
VTNYFLVNL AFAEASMAA FNTVVNFTY AVHNEWYYG LFYCKFHNF 
FPIAAVFAS IYSMTAVAF DRYMAIIHP LQPRLSATA TKVVICVIW 
VLALLLAFP QGYYSTTET MPSRVVCMI EWPEHPNKI YEKVYHICV 
TVLIYFLPL LVIGYAYTV VGITLWAEQ VSAKRKVVK MMIVVVCTF 
AICWLPFHI FFLLPYINP DLYLKKFIQ QVYLAIMWL AMSSTMYNP 
IIYCCLNDR FRLGFKHAF R


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6E59APeptideTachykininNK1Homo sapiensL-760735--3.42018-12-12doi.org/10.1073/pnas.1812717115
6HLLAPeptideTachykininNK1Homo sapiensCP99994--3.272019-01-16doi.org/10.1038/s41467-018-07939-8
6HLOAPeptideTachykininNK1Homo sapiensAprepitant--2.42019-01-16doi.org/10.1038/s41467-018-07939-8
6HLPAPeptideTachykininNK1Homo sapiensNetupitant--2.22019-01-16doi.org/10.1038/s41467-018-07939-8
6J20APeptideTachykininNK1Homo sapiensAprepitant--2.72019-03-06doi.org/10.1038/s41467-019-08568-5
6J21APeptideTachykininNK1Homo sapiensAprepitant--3.22019-03-06doi.org/10.1038/s41467-019-08568-5
7RMGAPeptideTachykininNK1Homo sapiensSubstance-P-chim(Gs-CtGq)/β1/γ232021-11-03doi.org/10.1038/s41589-021-00890-8
7RMG (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-32021-11-03doi.org/10.1038/s41589-021-00890-8
7RMHAPeptideTachykininNK1Homo sapiensSubstance-P-Gs/β1/γ23.12021-11-03doi.org/10.1038/s41589-021-00890-8
7RMH (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-3.12021-11-03doi.org/10.1038/s41589-021-00890-8
7RMIAPeptideTachykininNK1Homo sapiensSubstance-P-chim(Gs-CtGq)/β1/γ23.22021-11-03doi.org/10.1038/s41589-021-00890-8
7RMI (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-3.22021-11-03doi.org/10.1038/s41589-021-00890-8
7P00APeptideTachykininNK1Homo sapiensSubstance-P-chim(NtGi1-Gs-CtGq)/β1/γ22.712021-12-15doi.org/10.1126/sciadv.abk2872
7P00 (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-2.712021-12-15doi.org/10.1126/sciadv.abk2872
7P02APeptideTachykininNK1Homo sapiensSubstance-P-chim(NtGi1-Gs)/β1/γ22.872021-12-15doi.org/10.1126/sciadv.abk2872
7P02 (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-2.872021-12-15doi.org/10.1126/sciadv.abk2872
8U26APeptideTachykininNK1Homo sapiensSubstance-P-Gs/β1/γ22.52023-11-15doi.org/10.1038/s41592-023-02082-9
8U26 (No Gprot) APeptideTachykininNK1Homo sapiensSubstance-P-2.52023-11-15doi.org/10.1038/s41592-023-02082-9




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Download 7RMG_nogp.zip



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