Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L32 4.0475437
2R:R:F43 5.446508
3R:R:N46 7.62449
4R:R:D51 6.794529
5R:R:Y104 11.75468
6R:R:W130 5.112549
7R:R:P140 7.7325415
8R:R:F157 12.708514
9R:R:F158 9.405413
10R:R:F161 7.15414
11R:R:F181 9.038558
12R:R:F184 8.305406
13R:R:Y185 7.26559
14R:R:I231 3.3025407
15R:R:F234 7.8275409
16R:R:W238 7.345418
17R:R:F241 5.5775416
18R:R:T244 4.8025404
19R:R:L260 5.7425404
20R:R:N275 5.8825409
21R:R:P276 4.565429
22R:R:Y279 3.87167609
23R:R:Q289 5.4575407
24L:L:?1 8.466921310
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:R262 R:R:Y263 19.14073.09NoNo034
2R:R:V259 R:R:Y263 20.66543.79NoNo014
3R:R:L264 R:R:V259 22.17934.47NoNo041
4R:R:L264 R:R:T244 23.68224.42NoYes044
5R:R:L260 R:R:T244 44.91947.37YesYes044
6R:R:F241 R:R:L260 43.44374.87YesYes064
7L:L:?1 R:R:W265 13.27626.05YesNo003
8R:R:F241 R:R:W238 39.77896.01YesYes168
9R:R:N271 R:R:W238 98.0563.39NoYes098
10R:R:N271 R:R:N275 1005.45NoYes099
11R:R:D51 R:R:N275 57.06274.04YesYes099
12R:R:D51 R:R:S272 18.94478.83YesNo099
13R:R:I54 R:R:S272 13.29789.29NoNo089
14R:R:D51 R:R:P276 37.76413.22YesYes299
15R:R:A280 R:R:V25 30.51623.39NoNo089
16R:R:P276 R:R:V25 34.9761.77YesNo099
17R:R:A280 R:R:T44 25.95841.68NoNo087
18R:R:T44 R:R:V29 24.41733.17NoNo078
19R:R:I33 R:R:V29 19.72883.07NoNo078
20R:R:I33 R:R:L41 18.14422.85NoNo079
21R:R:L32 R:R:L41 16.54872.77YesNo079
22R:R:L32 R:R:Q289 10.05775.32YesYes077
23R:R:L47 R:R:N275 44.30959.61NoYes099
24R:R:L47 R:R:Y279 45.94313.52NoYes099
25R:R:I99 R:R:Y279 33.85433.63NoYes099
26R:R:F43 R:R:I99 31.85043.77YesNo089
27R:R:D102 R:R:F43 16.19478.36NoYes098
28R:R:D102 R:R:Y113 11.62068.05NoNo099
29R:R:N275 R:R:V96 83.59294.43YesNo099
30R:R:V96 R:R:Y279 41.79373.79NoYes099
31R:R:L47 R:R:T95 21.31895.9NoNo098
32R:R:N46 R:R:T95 19.848610.24YesNo098
33L:L:?1 R:R:T86 10.76566.56YesNo005
34R:R:W130 R:R:Y134 11.14685.79YesNo094
35R:R:C78 R:R:M82 11.62063.24NoNo095
36R:R:F157 R:R:M82 12.41026.22YesNo145
37R:R:F157 R:R:F161 25.20699.65YesYes144
38R:R:F161 R:R:V160 18.08432.62YesNo045
39R:R:S79 R:R:V160 13.28146.46NoNo045
40R:R:L141 R:R:S79 11.65873NoNo064
41R:R:A91 R:R:W130 10.77653.89NoYes079
42R:R:F234 R:R:V96 57.22615.24YesNo099
43R:R:F181 R:R:F234 47.032220.36YesYes089
44R:R:F181 R:R:T100 13.10729.08YesNo588
45R:R:F184 R:R:T100 15.32893.89YesNo068
46R:R:R103 R:R:Y279 28.67025.14NoYes099
47R:R:R103 R:R:Y185 27.21085.14NoYes099
48R:R:L230 R:R:Y279 28.67023.52NoYes089
49R:R:L230 R:R:Y185 27.21089.38NoYes089
50R:R:F181 R:R:Y185 21.39518.25YesYes589
51R:R:M188 R:R:Y185 47.76194.79NoYes099
52R:R:M188 R:R:Y104 26.38863.59NoYes098
53R:R:D187 R:R:Y104 21.40610.34NoYes658
54R:R:F165 R:R:L169 10.12316.09NoNo066
55L:L:?1 R:R:L169 11.60974.4YesNo006
56R:R:L256 R:R:T244 20.66545.9NoYes054
57R:R:L256 R:R:Q248 19.14077.99NoNo053
58R:R:Q248 R:R:Y257 17.605118.04NoNo034
59R:R:P163 R:R:Y257 14.50129.74NoNo034
60R:R:F181 R:R:I231 32.6893.77YesYes087
61R:R:I231 R:R:V227 24.46633.07YesNo078
62R:R:D187 R:R:K190 16.08581.38NoNo053
63R:R:K190 R:R:M194 10.7338.64NoNo034
64R:R:T226 R:R:V227 14.23981.59NoNo088
65R:R:T226 R:R:W282 12.49733.64NoNo087
66R:R:I107 R:R:M188 17.68132.92NoNo089
67R:R:I107 R:R:I191 13.2762.94NoNo086
68L:L:?1 R:R:W238 57.030110.13YesYes108
69R:R:N46 R:R:W130 17.58339.04YesYes499
70L:L:?1 R:R:F157 35.172120.12YesYes104
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L61 4.4 1 Yes No 0 5 0 1
R:R:F157 R:R:M82 6.22 1 Yes No 4 5 1 2
R:R:F161 R:R:M82 6.22 1 Yes No 4 5 2 2
L:L:?1 R:R:V85 5.68 1 Yes No 0 7 0 1
R:R:G137 R:R:T86 3.64 0 No No 7 5 2 1
L:L:?1 R:R:T86 6.56 1 Yes No 0 5 0 1
L:L:?1 R:R:A89 5 1 Yes No 0 6 0 1
L:L:?1 R:R:V93 6.63 1 Yes No 0 7 0 1
R:R:A159 R:R:S156 3.42 0 No No 4 4 2 1
R:R:F157 R:R:F158 18.22 1 Yes Yes 4 3 1 2
R:R:F157 R:R:F161 9.65 1 Yes Yes 4 4 1 2
R:R:E261 R:R:F157 9.33 1 No Yes 4 4 1 1
L:L:?1 R:R:F157 20.12 1 Yes Yes 0 4 0 1
R:R:F158 R:R:V166 3.93 1 Yes No 3 6 2 2
R:R:F158 R:R:L260 7.31 1 Yes Yes 3 4 2 2
R:R:E261 R:R:F158 8.16 1 No Yes 4 3 1 2
R:R:F165 R:R:L169 6.09 1 No No 6 6 2 1
R:R:F241 R:R:V166 5.24 1 Yes No 6 6 1 2
L:L:?1 R:R:L169 4.4 1 Yes No 0 6 0 1
R:R:F241 R:R:W238 6.01 1 Yes Yes 6 8 1 1
R:R:G268 R:R:W238 9.85 0 No Yes 7 8 2 1
R:R:N271 R:R:W238 3.39 0 No Yes 9 8 2 1
L:L:?1 R:R:W238 10.13 1 Yes Yes 0 8 0 1
R:R:F241 R:R:L260 4.87 1 Yes Yes 6 4 1 2
L:L:?1 R:R:F241 6.19 1 Yes Yes 0 6 0 1
L:L:?1 R:R:E261 11.79 1 Yes No 0 4 0 1
R:R:V269 R:R:W265 8.58 0 No No 6 3 2 1
L:L:?1 R:R:W265 26.05 1 Yes No 0 3 0 1
R:R:I58 R:R:W265 2.35 0 No No 7 3 2 1
L:L:?1 R:R:G173 2.17 1 Yes No 0 6 0 1
L:L:?1 R:R:S156 0.95 1 Yes No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7WCN_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.22
Number of Linked Nodes 252
Number of Links 262
Number of Hubs 24
Number of Links mediated by Hubs 95
Number of Communities 6
Number of Nodes involved in Communities 26
Number of Links involved in Communities 30
Path Summary
Number Of Nodes in MetaPath 71
Number Of Links MetaPath 70
Number of Shortest Paths 40697
Length Of Smallest Path 3
Average Path Length 12.5384
Length of Longest Path 27
Minimum Path Strength 1.455
Average Path Strength 5.93126
Maximum Path Strength 23.085
Minimum Path Correlation 0.7
Average Path Correlation 0.94901
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 6.66667
Average % Of Corr. Nodes 67.5684
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.5178
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • metabolic process   • regulation of metabolic process   • establishment of protein localization   • nitrogen compound transport   • transport   • hormone secretion   • protein localization to extracellular region   • peptide secretion   • localization   • secretion by cell   • amide transport   • signal release   • regulation of biological quality   • intracellular protein localization   • secretion   • regulation of hormone levels   • establishment of protein localization to extracellular region   • cell-cell signaling   • export from cell   • protein secretion   • establishment of localization   • peptide transport   • protein transport   • peptide hormone secretion   • macromolecule localization   • hormone transport   • insulin secretion   • protein-containing complex   • receptor complex   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • intracellular anatomical structure   • cytoplasm   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • synapse   • cell junction   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • D1 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • molecular function regulator activity   • enzyme regulator activity   • cyclase regulator activity   • enzyme activator activity   • cyclase activator activity   • molecular function activator activity   • adenylate cyclase regulator activity   • adenylate cyclase activator activity   • cation binding   • metal ion binding   • epithelium development   • ectodermal placode morphogenesis   • epidermis development   • molting cycle process   • hair cycle   • hair follicle placode formation   • tissue development   • ectodermal placode formation   • anatomical structure morphogenesis   • skin development   • skin epidermis development   • hair follicle development   • molting cycle   • anatomical structure formation involved in morphogenesis   • ectodermal placode development   • hair cycle process   • sensory perception of smell   • response to peptide hormone   • cellular response to peptide hormone stimulus   • response to glucagon   • cellular response to glucagon stimulus   • skeletal system development   • bone development   • regulation of body fluid levels   • wound healing   • homotypic cell-cell adhesion   • cell activation   • hemostasis   • platelet aggregation   • blood coagulation   • cell adhesion   • cell-cell adhesion   • response to stress   • coagulation   • response to wounding   • platelet activation   • response to fluid shear stress   • vascular endothelial cell response to laminar fluid shear stress   • response to laminar fluid shear stress   • cellular response to stress   • cellular response to laminar fluid shear stress   • vascular endothelial cell response to fluid shear stress   • cellular response to fluid shear stress   • cognition   • developmental growth   • growth   • homeostatic process   • positive regulation of biological process   • adaptive thermogenesis   • positive regulation of metabolic process   • multicellular organismal-level homeostasis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • positive regulation of cold-induced thermogenesis   • positive regulation of multicellular organismal process   • regulation of multicellular organismal process   • positive regulation of cellular process   • regulation of localization   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • regulation of secretion by cell   • regulation of peptide hormone secretion   • regulation of signaling   • regulation of transport   • regulation of peptide transport   • regulation of establishment of protein localization   • regulation of protein transport   • regulation of protein secretion   • regulation of secretion   • regulation of insulin secretion   • regulation of cell communication   • adenylate cyclase-activating adrenergic receptor signaling pathway   • adrenergic receptor signaling pathway   • cellular localization   • establishment of localization in cell   • intracellular transport   • regulation of defense response   • regulation of response to external stimulus   • negative regulation of inflammatory response   • negative regulation of biological process   • inflammatory response to antigenic stimulus   • regulation of response to stress   • regulation of immune system process   • negative regulation of inflammatory response to antigenic stimulus   • defense response   • immune response   • negative regulation of response to stimulus   • negative regulation of immune response   • regulation of inflammatory response to antigenic stimulus   • response to external stimulus   • regulation of inflammatory response   • regulation of response to stimulus   • negative regulation of immune system process   • immune system process   • negative regulation of response to external stimulus   • negative regulation of defense response   • regulation of immune response   • inflammatory response   • positive regulation of adenylate cyclase activity   • positive regulation of molecular function   • regulation of molecular function   • positive regulation of cyclase activity   • activation of adenylate cyclase activity   • regulation of adenylate cyclase activity   • regulation of catalytic activity   • positive regulation of catalytic activity   • positive regulation of lyase activity   • renal system process   • chemical homeostasis   • multicellular organismal-level water homeostasis   • multicellular organismal-level chemical homeostasis   • renal water homeostasis   • Golgi apparatus subcompartment   • Golgi apparatus   • organelle subcompartment   • trans-Golgi network membrane   • endomembrane system   • trans-Golgi network
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code8WL
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code8WL
NameN-(2-fluoranyl-4-methylsulfonyl-phenyl)-5-nitro-6-[4-(3-propan-2-yl-1,2,4-oxadiazol-5-yl)piperidin-1-yl]pyrimidin-4-amine
SynonymsAR231453
Identifier
FormulaC21 H24 F N7 O5 S
Molecular Weight505.523
SMILES
PubChem24939268
Formal Charge0
Total Atoms59
Total Chiral Atoms0
Total Bonds62
Total Aromatic Bonds17

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDV5
Sequence
>7WCN_nogp_Chain_R
FSFGVILAV LASLIIATN TLVAVAVLL LIHKNDGVS LCFTLNLAV 
ADTLIGVAI SGLLTDQLS SPSRPTQKT LCSLRMAFV TSSAAASVL 
TVMLITFDR YLAIKQPFR YLKIMSGFV AGACIAGLW LVSYLIGFL 
PLGIPMFQQ TAYKGQCSF FAVFHPHFV LTLSCVGFF PAMLLFVFF 
YCDMLKIAS MHSQQIRKM EHAGAMAGG YDFKALRTV SVLIGSFAL 
CWTPFLITG IVQVACQEC HLYLVLERY LWLLGVGNS LLNPLIYAY 
WQKEVRLQL YHMALGVKK V


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7WCMALipidGPR119GPR119Homo sapiensMBX-2982-Gs/β1/γ22.332022-12-21doi.org/10.1038/s41467-022-34696-6
7WCM (No Gprot) ALipidGPR119GPR119Homo sapiensMBX-2982-2.332022-12-21doi.org/10.1038/s41467-022-34696-6
7WCNALipidGPR119GPR119Homo sapiensAR231453-Gs/β1/γ22.872022-12-21doi.org/10.1038/s41467-022-34696-6
7WCN (No Gprot) ALipidGPR119GPR119Homo sapiensAR231453-2.872022-12-21doi.org/10.1038/s41467-022-34696-6
7XZ5ALipidGPR119GPR119Homo sapiensLysophosphatidylcholine-Gs/β1/γ23.12022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ5 (No Gprot) ALipidGPR119GPR119Homo sapiensLysophosphatidylcholine-3.12022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ6ALipidGPR119GPR119Homo sapiensAPD668-Gs/β1/γ22.82022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ6 (No Gprot) ALipidGPR119GPR119Homo sapiensAPD668-2.82022-08-24doi.org/10.1038/s41594-022-00816-5
8VHFALipidGPR119GPR119Homo sapiensMBX-2982-Gs/β1/γ23.512024-10-30doi.org/10.1016/j.str.2024.10.004
8VHF (No Gprot) ALipidGPR119GPR119Homo sapiensMBX-2982-3.512024-10-30doi.org/10.1016/j.str.2024.10.004
8ZR5ALipidGPR119GPR119Homo sapiensFiruglipel-Gs/β1/γ23.312024-06-19To be published
8ZR5 (No Gprot) ALipidGPR119GPR119Homo sapiensFiruglipel-3.312024-06-19To be published
8ZRKALipidGPR119GPR119Homo sapiensGSK-1292263-Gs/β1/γ22.822024-06-19To be published
8ZRK (No Gprot) ALipidGPR119GPR119Homo sapiensGSK-1292263-2.822024-06-19To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7WCN_nogp.zip



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