Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.8133900
2R:R:I18 4.175408
3R:R:N22 5.7375409
4R:R:L32 4.4325407
5R:R:L41 3.236509
6R:R:F43 5.8025408
7R:R:D51 6.992509
8R:R:R81 5.6325406
9R:R:Y104 11.3525448
10R:R:Y113 9.3725409
11R:R:W130 4.55833609
12R:R:Y134 7.675404
13R:R:F146 7.234522
14R:R:Y151 7.345434
15R:R:F158 8.308503
16R:R:F165 6.3325426
17R:R:F174 5.62518
18R:R:F181 12.135418
19R:R:F184 7.964506
20R:R:Y185 7.61667619
21R:R:F234 8.598519
22R:R:W238 10.8025408
23R:R:L256 4.3425405
24R:R:L260 5.62404
25R:R:W265 11.9403
26R:R:I278 3.2575408
27R:R:Y279 5.2675409
28R:R:Q289 5.685407
29R:R:M293 3.2925405
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:W265 27.562929.03YesYes003
2R:R:L11 R:R:W265 21.06774.56NoYes063
3L:L:?1 R:R:W238 10016.99YesYes008
4R:R:S237 R:R:W238 80.98134.94NoYes078
5R:R:N271 R:R:S237 80.66075.96NoNo097
6R:R:N271 R:R:N275 80.31229.54NoNo099
7R:R:D51 R:R:N275 80.1315.39YesNo099
8R:R:D51 R:R:N22 54.77049.42YesYes099
9R:R:I18 R:R:N22 18.99784.25YesYes089
10R:R:D51 R:R:S272 29.41678.83YesNo099
11R:R:I18 R:R:S272 15.45064.64YesNo089
12R:R:G55 R:R:I18 15.91053.53NoYes088
13R:R:I54 R:R:S272 18.60764.64NoNo089
14R:R:G55 R:R:I54 10.47463.53NoNo088
15R:R:I18 R:R:L273 12.25874.28YesNo085
16R:R:G55 R:R:I19 16.57961.76NoNo086
17R:R:N22 R:R:P276 46.09384.89YesNo099
18R:R:P276 R:R:V25 44.56761.77NoNo099
19R:R:A280 R:R:V25 39.90523.39NoNo089
20R:R:A280 R:R:V286 38.32321.7NoNo089
21R:R:L32 R:R:V286 35.11742.98YesNo079
22R:R:L32 R:R:L41 16.4892.77YesYes079
23R:R:L32 R:R:Q289 16.48910.65YesYes077
24R:R:F174 R:R:W238 69.551910.02YesYes088
25R:R:F174 R:R:F234 61.80924.29YesYes189
26R:R:F234 R:R:V96 23.40933.93YesNo099
27R:R:V96 R:R:Y279 22.55215.05NoYes099
28R:R:I99 R:R:Y279 30.49694.84NoYes099
29R:R:F43 R:R:I99 30.2533.77YesNo089
30R:R:F43 R:R:I126 26.57333.77YesNo087
31R:R:D102 R:R:F43 11.65248.36NoYes098
32R:R:D51 R:R:L47 39.13865.43YesNo099
33R:R:L47 R:R:T95 38.58118.84NoNo098
34R:R:N46 R:R:T95 25.76498.77NoNo098
35R:R:N46 R:R:W130 22.40579.04NoYes099
36R:R:L129 R:R:T95 13.33895.9NoNo068
37R:R:L129 R:R:W130 12.4055.69NoYes069
38R:R:I54 R:R:S88 15.59694.64NoNo086
39R:R:F84 R:R:S88 14.60733.96NoNo036
40L:L:?1 R:R:M82 27.68837.03YesNo005
41R:R:L61 R:R:M82 26.12734.24NoNo055
42R:R:L61 R:R:R81 22.82393.64NoYes056
43R:R:C78 R:R:R81 12.57932.79NoYes096
44L:L:?1 R:R:L169 29.305210.32YesNo006
45R:R:F165 R:R:L169 27.7584.87YesNo066
46R:R:F161 R:R:F165 10.78126.43NoYes246
47R:R:W130 R:R:Y134 19.08153.86YesYes094
48R:R:F84 R:R:Y134 12.93477.22NoYes034
49R:R:S87 R:R:Y134 14.237916.53NoYes054
50R:R:G137 R:R:S87 10.69763.71NoNo075
51R:R:A91 R:R:W130 10.08433.89NoYes079
52R:R:F181 R:R:F234 40.567323.58YesYes189
53R:R:F181 R:R:T100 13.61077.78YesNo188
54R:R:F184 R:R:T100 14.13343.89YesNo068
55R:R:F181 R:R:Y185 24.273513.41YesYes189
56R:R:R103 R:R:Y279 11.12975.14NoYes099
57R:R:R103 R:R:Y185 10.54434.12NoYes099
58R:R:K108 R:R:Y104 13.722213.14NoYes468
59R:R:M188 R:R:Y185 19.96654.79NoYes099
60R:R:M188 R:R:Y104 11.18543.59NoYes098
61R:R:K108 R:R:Q109 11.03214.07NoNo065
62R:R:F146 R:R:F165 14.26585.36YesYes226
63L:L:?1 R:R:F157 20.273222.71YesNo004
64R:R:F157 R:R:F158 17.22777.5NoYes043
65L:L:?1 R:R:F241 16.83743.79YesNo006
66R:R:F241 R:R:L260 13.79896.09NoYes064
67R:R:F174 R:R:L242 13.15074.87YesNo086
68R:R:L242 R:R:S170 11.55486.01NoNo066
69R:R:I278 R:R:Y279 11.56886.04YesYes089
70R:R:L260 R:R:T244 10.78127.37YesNo044
71R:R:G8 R:R:L11 10.82311.71NoNo046
72R:R:I126 R:R:N46 24.064412.74NoNo079
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:M82 7.03 0 Yes No 0 5 0 1
L:L:?1 R:R:V93 9.26 0 Yes No 0 7 0 1
L:L:?1 R:R:F157 22.71 0 Yes No 0 4 0 1
L:L:?1 R:R:L169 10.32 0 Yes No 0 6 0 1
L:L:?1 R:R:G173 4.25 0 Yes No 0 6 0 1
L:L:?1 R:R:W238 16.99 0 Yes Yes 0 8 0 1
L:L:?1 R:R:F241 3.79 0 Yes No 0 6 0 1
L:L:?1 R:R:W265 29.03 0 Yes Yes 0 3 0 1
R:R:L11 R:R:W265 4.56 0 No Yes 6 3 2 1
R:R:L61 R:R:M82 4.24 0 No No 5 5 2 1
R:R:F157 R:R:T86 3.89 0 No No 4 5 1 2
R:R:F157 R:R:F158 7.5 0 No Yes 4 3 1 2
R:R:F158 R:R:L260 7.31 0 Yes Yes 3 4 2 2
R:R:F165 R:R:L169 4.87 2 Yes No 6 6 2 1
R:R:F174 R:R:W238 10.02 1 Yes Yes 8 8 2 1
R:R:S237 R:R:W238 4.94 0 No Yes 7 8 2 1
R:R:G268 R:R:W238 11.26 0 No Yes 7 8 2 1
R:R:F241 R:R:L260 6.09 0 No Yes 6 4 1 2
R:R:L266 R:R:W265 9.11 0 No Yes 5 3 2 1
R:R:V269 R:R:W265 4.9 0 No Yes 6 3 2 1
L:L:?1 R:R:A89 2.94 0 Yes No 0 6 0 1
R:R:F241 R:R:V166 2.62 0 No No 6 6 1 2
R:R:G173 R:R:P176 2.03 0 No No 6 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8ZRK_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.53
Number of Linked Nodes 245
Number of Links 251
Number of Hubs 29
Number of Links mediated by Hubs 116
Number of Communities 4
Number of Nodes involved in Communities 16
Number of Links involved in Communities 18
Path Summary
Number Of Nodes in MetaPath 73
Number Of Links MetaPath 72
Number of Shortest Paths 31544
Length Of Smallest Path 3
Average Path Length 12.2386
Length of Longest Path 25
Minimum Path Strength 1.435
Average Path Strength 6.92161
Maximum Path Strength 23.01
Minimum Path Correlation 0.7
Average Path Correlation 0.945754
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 7.69231
Average % Of Corr. Nodes 65.6363
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.3278
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • metabolic process   • regulation of metabolic process   • establishment of protein localization   • nitrogen compound transport   • transport   • hormone secretion   • protein localization to extracellular region   • peptide secretion   • localization   • secretion by cell   • amide transport   • signal release   • regulation of biological quality   • intracellular protein localization   • secretion   • regulation of hormone levels   • establishment of protein localization to extracellular region   • cell-cell signaling   • export from cell   • protein secretion   • establishment of localization   • peptide transport   • protein transport   • peptide hormone secretion   • macromolecule localization   • hormone transport   • insulin secretion   • protein-containing complex   • receptor complex   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • intracellular anatomical structure   • cytoplasm   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • synapse   • cell junction   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • D1 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • molecular function regulator activity   • enzyme regulator activity   • cyclase regulator activity   • enzyme activator activity   • cyclase activator activity   • molecular function activator activity   • adenylate cyclase regulator activity   • adenylate cyclase activator activity   • cation binding   • metal ion binding   • epithelium development   • ectodermal placode morphogenesis   • epidermis development   • molting cycle process   • hair cycle   • hair follicle placode formation   • tissue development   • ectodermal placode formation   • anatomical structure morphogenesis   • skin development   • skin epidermis development   • hair follicle development   • molting cycle   • anatomical structure formation involved in morphogenesis   • ectodermal placode development   • hair cycle process   • sensory perception of smell   • response to peptide hormone   • cellular response to peptide hormone stimulus   • response to glucagon   • cellular response to glucagon stimulus   • skeletal system development   • bone development   • regulation of body fluid levels   • wound healing   • homotypic cell-cell adhesion   • cell activation   • hemostasis   • platelet aggregation   • blood coagulation   • cell adhesion   • cell-cell adhesion   • response to stress   • coagulation   • response to wounding   • platelet activation   • response to fluid shear stress   • vascular endothelial cell response to laminar fluid shear stress   • response to laminar fluid shear stress   • cellular response to stress   • cellular response to laminar fluid shear stress   • vascular endothelial cell response to fluid shear stress   • cellular response to fluid shear stress   • cognition   • developmental growth   • growth   • homeostatic process   • positive regulation of biological process   • adaptive thermogenesis   • positive regulation of metabolic process   • multicellular organismal-level homeostasis   • regulation of cold-induced thermogenesis   • cold-induced thermogenesis   • temperature homeostasis   • positive regulation of cold-induced thermogenesis   • positive regulation of multicellular organismal process   • regulation of multicellular organismal process   • positive regulation of cellular process   • regulation of localization   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • regulation of secretion by cell   • regulation of peptide hormone secretion   • regulation of signaling   • regulation of transport   • regulation of peptide transport   • regulation of establishment of protein localization   • regulation of protein transport   • regulation of protein secretion   • regulation of secretion   • regulation of insulin secretion   • regulation of cell communication   • adenylate cyclase-activating adrenergic receptor signaling pathway   • adrenergic receptor signaling pathway   • cellular localization   • establishment of localization in cell   • intracellular transport   • regulation of defense response   • regulation of response to external stimulus   • negative regulation of inflammatory response   • negative regulation of biological process   • inflammatory response to antigenic stimulus   • regulation of response to stress   • regulation of immune system process   • negative regulation of inflammatory response to antigenic stimulus   • defense response   • immune response   • negative regulation of response to stimulus   • negative regulation of immune response   • regulation of inflammatory response to antigenic stimulus   • response to external stimulus   • regulation of inflammatory response   • regulation of response to stimulus   • negative regulation of immune system process   • immune system process   • negative regulation of response to external stimulus   • negative regulation of defense response   • regulation of immune response   • inflammatory response   • positive regulation of adenylate cyclase activity   • positive regulation of molecular function   • regulation of molecular function   • positive regulation of cyclase activity   • activation of adenylate cyclase activity   • regulation of adenylate cyclase activity   • regulation of catalytic activity   • positive regulation of catalytic activity   • positive regulation of lyase activity   • renal system process   • chemical homeostasis   • multicellular organismal-level water homeostasis   • multicellular organismal-level chemical homeostasis   • renal water homeostasis   • Golgi apparatus subcompartment   • Golgi apparatus   • organelle subcompartment   • trans-Golgi network membrane   • endomembrane system   • trans-Golgi network
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1D
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDV5
Sequence
>8ZRK_nogp_Chain_R
SFGVILAVL ASLIIATNT LVAVAVLLL IHKNDGVSL CFTLNLAVA 
DTLIGVAIS GLLTDQQKT LCSLRMAFV TSSAAASVL TVMLITFDR 
YLAIKQPFR YLKIMSGFV AGACIAGLW LVSYLIGFL PLGIPMFQQ 
TAYKGQCSF FAVFHPHFV LTLSCVGFF PAMLLFVFF YCDMLKIAS 
MHSQQIRKM EHAGAMAGS DFKALRTVS VLIGSFALS WTPFLITGI 
VQVACQECH LYLVLERYL WLLGVGNSL LNPLIYAYW QKEVRLQLY 
HM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7WCMALipidGPR119GPR119Homo sapiensMBX-2982-Gs/β1/γ22.332022-12-21doi.org/10.1038/s41467-022-34696-6
7WCM (No Gprot) ALipidGPR119GPR119Homo sapiensMBX-2982-2.332022-12-21doi.org/10.1038/s41467-022-34696-6
7WCNALipidGPR119GPR119Homo sapiensAR231453-Gs/β1/γ22.872022-12-21doi.org/10.1038/s41467-022-34696-6
7WCN (No Gprot) ALipidGPR119GPR119Homo sapiensAR231453-2.872022-12-21doi.org/10.1038/s41467-022-34696-6
7XZ5ALipidGPR119GPR119Homo sapiensLysophosphatidylcholine-Gs/β1/γ23.12022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ5 (No Gprot) ALipidGPR119GPR119Homo sapiensLysophosphatidylcholine-3.12022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ6ALipidGPR119GPR119Homo sapiensAPD668-Gs/β1/γ22.82022-08-24doi.org/10.1038/s41594-022-00816-5
7XZ6 (No Gprot) ALipidGPR119GPR119Homo sapiensAPD668-2.82022-08-24doi.org/10.1038/s41594-022-00816-5
8VHFALipidGPR119GPR119Homo sapiensMBX-2982-Gs/β1/γ23.512024-10-30doi.org/10.1016/j.str.2024.10.004
8VHF (No Gprot) ALipidGPR119GPR119Homo sapiensMBX-2982-3.512024-10-30doi.org/10.1016/j.str.2024.10.004
8ZR5ALipidGPR119GPR119Homo sapiensFiruglipel-Gs/β1/γ23.312024-06-19To be published
8ZR5 (No Gprot) ALipidGPR119GPR119Homo sapiensFiruglipel-3.312024-06-19To be published
8ZRKALipidGPR119GPR119Homo sapiensGSK-1292263-Gs/β1/γ22.822024-06-19To be published
8ZRK (No Gprot) ALipidGPR119GPR119Homo sapiensGSK-1292263-2.822024-06-19To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ZRK_nogp.zip



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