Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:I29 4.8725405
2R:R:I40 3.0125406
3R:R:M56 7.965468
4R:R:Y63 7.71508
5R:R:L67 5.41409
6R:R:W91 7.842538
7R:R:Y93 5.054536
8R:R:Y103 10.0125406
9R:R:Y106 10.6117615
10R:R:I109 5.4025417
11R:R:F119 8.74409
12R:R:Y124 8.105478
13R:R:H129 4.865476
14R:R:R141 7.0775405
15R:R:W150 4.085409
16R:R:W160 13.28415
17R:R:Y181 8.23833614
18R:R:R185 7.245412
19R:R:Y192 7.48833615
20R:R:F199 6.165625
21R:R:Y200 9.1725408
22R:R:Y211 8.6725409
23R:R:R261 5.79407
24R:R:W279 12.14418
25R:R:Y282 8.292515
26R:R:R283 10.1125416
27R:R:N289 6.92404
28R:R:Y310 4.705817
29R:R:F327 6.252558
30L:L:?1 6.88125810
31L:L:H2 5.78710
32L:L:?3 8.5175810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I35 R:R:Y310 14.37872.42NoYes077
2R:R:I35 R:R:L311 12.34588.56NoNo075
3R:R:I307 R:R:L311 10.30572.85NoNo055
4R:R:I40 R:R:L72 12.34584.28YesNo067
5R:R:L72 R:R:N43 14.378715.1NoNo079
6R:R:D71 R:R:N43 16.375512.12NoNo499
7R:R:D71 R:R:S313 20.43412.94NoNo099
8R:R:L75 R:R:S313 22.43817.51NoNo079
9R:R:L75 R:R:Y310 32.34943.52NoYes077
10R:R:F327 R:R:N321 10.878.46YesNo587
11R:R:L64 R:R:N321 17.39199.61NoNo087
12R:R:F119 R:R:L64 18.33977.31YesNo098
13R:R:F119 R:R:R123 46.905414.97YesNo099
14R:R:R123 R:R:Y320 63.67526.17NoNo099
15R:R:I116 R:R:Y320 69.03247.25NoNo089
16R:R:F275 R:R:I116 73.79636.28NoNo098
17R:R:F275 R:R:W279 74.18720.04NoYes098
18R:R:I109 R:R:W279 74.53794.7YesYes178
19L:L:?3 R:R:I109 1003.93YesYes107
20L:L:?3 R:R:A78 28.5264.34YesNo107
21R:R:A78 R:R:Y310 28.27274NoYes177
22L:L:?3 R:R:R306 33.651712.28YesNo105
23R:R:R306 R:R:Y310 27.67237.2NoYes157
24R:R:F119 R:R:Y63 30.32016.19YesYes098
25R:R:E122 R:R:Y63 19.522513.47NoYes088
26R:R:E122 R:R:P59 13.22844.72NoNo086
27R:R:P59 R:R:T58 12.13245.25NoNo067
28R:R:N61 R:R:T58 11.021910.24NoNo097
29R:R:I146 R:R:S66 11.41266.19NoNo079
30R:R:S115 R:R:S66 20.72714.89NoNo089
31R:R:L67 R:R:S115 22.56836.01YesNo098
32R:R:I116 R:R:L67 17.04837.14NoYes089
33R:R:L67 R:R:N316 12.49055.49YesNo099
34R:R:N312 R:R:N316 12.88128.17NoNo099
35R:R:N312 R:R:W279 15.818415.82NoYes098
36L:L:?3 R:R:Y106 26.43886.46YesYes105
37L:L:?3 L:L:H2 41.28054.73YesYes100
38L:L:H2 R:R:C179 17.4397.37YesNo009
39R:R:C179 R:R:W91 16.614215.67NoYes098
40L:L:H2 R:R:Y181 10.09955.44YesYes104
41R:R:I109 R:R:R283 25.31023.76YesYes176
42R:R:D195 R:R:R283 16.216314.29NoYes066
43R:R:D195 R:R:F199 15.0953.58NoYes065
44R:R:R123 R:R:Y211 28.65989.26NoYes099
45R:R:F196 R:R:V201 10.73973.93NoNo065
46R:R:F196 R:R:Y200 17.760910.32NoYes068
47R:R:R283 R:R:Y200 24.011614.4YesYes068
48R:R:I214 R:R:L268 10.24782.85NoNo098
49R:R:L268 R:R:Y211 21.197312.89NoYes089
50R:R:Y181 R:R:Y188 11.542816.88YesNo045
51L:L:?3 R:R:Y282 15.116715.08YesYes105
52L:L:?1 R:R:Y282 12.86316.27YesYes105
53L:L:?1 L:L:H2 14.0644.13YesYes100
54R:R:L268 R:R:V264 10.08142.98NoNo088
55R:R:L218 R:R:R261 13.77834.86NoYes087
56R:R:V271 R:R:Y320 10.11766.31NoNo089
57L:L:?1 R:R:N289 16.802310.28YesYes004
58R:R:P295 R:R:R185 13.71312.88NoYes012
59R:R:R283 R:R:W279 13.12718YesYes168
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:I109 R:R:V74 9.22 1 Yes No 7 7 1 2
R:R:A78 R:R:Q105 6.06 1 No No 7 7 1 1
R:R:A78 R:R:Y310 4 1 No Yes 7 7 1 2
L:L:?3 R:R:A78 4.34 1 Yes No 0 7 0 1
R:R:N82 R:R:R306 8.44 1 No No 6 5 2 1
R:R:N82 R:R:Y310 5.81 1 No Yes 6 7 2 2
R:R:C179 R:R:W91 15.67 0 No Yes 9 8 1 2
R:R:T102 R:R:Y106 4.99 1 No Yes 4 5 1 1
R:R:L164 R:R:T102 7.37 0 No No 5 4 2 1
L:L:H2 R:R:T102 9.58 1 Yes No 0 4 0 1
L:L:?3 R:R:Q105 13.45 1 Yes No 0 7 0 1
R:R:W160 R:R:Y106 36.66 1 Yes Yes 5 5 2 1
R:R:Y106 R:R:Y181 3.97 1 Yes Yes 5 4 1 1
R:R:Y106 R:R:Y192 3.97 1 Yes Yes 5 5 1 1
L:L:H2 R:R:Y106 7.62 1 Yes Yes 0 5 0 1
L:L:?3 R:R:Y106 6.46 1 Yes Yes 0 5 0 1
R:R:I109 R:R:W279 4.7 1 Yes Yes 7 8 1 2
R:R:I109 R:R:R283 3.76 1 Yes Yes 7 6 1 2
L:L:?3 R:R:I109 3.93 1 Yes Yes 0 7 0 1
R:R:W160 R:R:Y192 7.72 1 Yes Yes 5 5 2 1
L:L:H2 R:R:C179 7.37 1 Yes No 0 9 0 1
R:R:R185 R:R:Y181 7.2 1 Yes Yes 2 4 1 1
R:R:Y181 R:R:Y188 16.88 1 Yes No 4 5 1 2
R:R:Y181 R:R:Y192 10.92 1 Yes Yes 4 5 1 1
L:L:?1 R:R:Y181 5.02 1 Yes Yes 0 4 0 1
L:L:H2 R:R:Y181 5.44 1 Yes Yes 0 4 0 1
R:R:R185 R:R:Y192 7.2 1 Yes Yes 2 5 1 1
L:L:?1 R:R:R185 11.7 1 Yes Yes 0 2 0 1
R:R:V286 R:R:Y192 11.36 1 No Yes 6 5 1 1
L:L:?1 R:R:Y192 3.76 1 Yes Yes 0 5 0 1
R:R:R283 R:R:W279 8 1 Yes Yes 6 8 2 2
R:R:V286 R:R:Y282 8.83 1 No Yes 6 5 1 1
R:R:C305 R:R:Y282 4.03 0 No Yes 5 5 2 1
R:R:I309 R:R:Y282 7.25 1 No Yes 6 5 1 1
L:L:?1 R:R:Y282 6.27 1 Yes Yes 0 5 0 1
L:L:?3 R:R:Y282 15.08 1 Yes Yes 0 5 0 1
R:R:L285 R:R:N289 9.61 0 No Yes 4 4 2 1
L:L:?1 R:R:V286 7.97 1 Yes No 0 6 0 1
R:R:F296 R:R:N289 4.83 0 No Yes 1 4 2 1
L:L:?1 R:R:N289 10.28 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L302 5.92 1 Yes No 0 4 0 1
R:R:R306 R:R:Y310 7.2 1 No Yes 5 7 1 2
L:L:?3 R:R:R306 12.28 1 Yes No 0 5 0 1
L:L:?3 R:R:I309 7.87 1 Yes No 0 6 0 1
R:R:N289 R:R:V288 2.96 0 Yes No 4 4 1 2
R:R:P295 R:R:R185 2.88 0 No Yes 1 2 2 1
L:L:H2 R:R:G180 1.59 1 Yes No 0 3 0 1
R:R:A77 R:R:Q105 1.52 0 No No 5 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7WKD_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.68
Number of Linked Nodes 249
Number of Links 278
Number of Hubs 32
Number of Links mediated by Hubs 130
Number of Communities 7
Number of Nodes involved in Communities 41
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 60
Number Of Links MetaPath 59
Number of Shortest Paths 49577
Length Of Smallest Path 3
Average Path Length 12.675
Length of Longest Path 27
Minimum Path Strength 1.54
Average Path Strength 7.29135
Maximum Path Strength 20.94
Minimum Path Correlation 0.7
Average Path Correlation 0.916578
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 45.1845
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.2766
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePCA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePCA
NamePidolic acid
SynonymsL-pyroglutamic acid
Identifier
FormulaC5 H7 N O3
Molecular Weight129.114
SMILES
PubChem7405
Formal Charge0
Total Atoms16
Total Chiral Atoms1
Total Bonds16
Total Aromatic Bonds0

CodeLPD
PDB ResiduesL:L:?3
Environment DetailsOpen EMBL-EBI Page
CodeLPD
NameL-PROLINAMIDE
Synonyms
Identifier
FormulaC5 H10 N2 O
Molecular Weight114.146
SMILES
PubChem111306
Formal Charge0
Total Atoms18
Total Chiral Atoms1
Total Bonds18
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP34981
Sequence
>7WKD_nogp_Chain_R
VVTILLVLI ICGLGIVGN IMVVLVVMR TKHMRTPTN CYLVSLAVA 
DLMVLVAAG LPNITDSIY GSWVYGYVG CLCITYLQY LGINASSCS 
ITAFTIERY IAICHPIKA QFLCTFSRA KKIIIFVWA FTSLYCMLW 
FFLLDLNIS CGYKISRNY YSPIYLMDF GVFYVVPMI LATVLYGFI 
ARILFLNRK QVTKMLAVV VILFALLWM PYRTLVVVN SFLSSPFQE 
NWFLLFCRI CIYLNSAIN PVIYNLMSQ KFRAAFRKL CN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XW9APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1L-Gs-CtGq)/β1/γ22.72022-12-28doi.org/10.1038/s41421-022-00477-0
7XW9 (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-2.72022-12-28doi.org/10.1038/s41421-022-00477-0
7WKDAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1-Gs-CtGq)/β1/γ23.012022-06-15doi.org/10.1038/s41422-022-00641-x
7WKD (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.012022-06-15doi.org/10.1038/s41422-022-00641-x
7X1TAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-chim(NtGi2L-Gs-CtGq)/β1/γ23.262022-08-31doi.org/10.1038/s41422-022-00646-6
7X1T (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-3.262022-08-31doi.org/10.1038/s41422-022-00646-6
7X1UAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi2L-Gs-CtGq)/β1/γ23.192022-08-31doi.org/10.1038/s41422-022-00646-6
7X1U (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.192022-08-31doi.org/10.1038/s41422-022-00646-6




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7WKD_nogp.zip



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