Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 8.21667610
2L:L:H2 8.1510
3L:L:P3 5.468510
4R:R:I40 5.33406
5R:R:M56 5.602538
6R:R:T58 5.37437
7R:R:N61 7.984539
8R:R:Y63 9.085408
9R:R:W91 8.02167678
10R:R:Y106 8.918515
11R:R:L107 4.556565
12R:R:F119 7.614529
13R:R:R123 7.43429
14R:R:Y124 9.21508
15R:R:C128 3.3175427
16R:R:W150 4.08667669
17R:R:W160 13.59715
18R:R:F161 4.17405
19R:R:Y181 7.71429714
20R:R:R185 8.366512
21R:R:Y188 12.7057715
22R:R:I191 8.082517
23R:R:Y192 9.684515
24R:R:F199 9.58645
25R:R:Y200 4.695408
26R:R:Y211 8.495429
27R:R:I214 3.374529
28R:R:F275 8.90333629
29R:R:W279 7.07528
30R:R:P281 4.5875409
31R:R:Y282 5.7175405
32R:R:R283 6.728546
33R:R:N289 7.244514
34R:R:R306 9615
35R:R:Y310 7.71417
36R:R:Y320 6.56857729
37R:R:F327 12.585438
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R306 37.92556.5YesYes105
2L:L:P3 R:R:R306 44.57724.32YesYes105
3L:L:P3 R:R:Q105 45.659911.05YesNo107
4L:L:P3 R:R:Y282 56.31884.17YesYes005
5L:L:?1 R:R:N289 20.907210.28YesYes104
6R:R:L285 R:R:N289 17.87698.24NoYes044
7R:R:C305 R:R:L285 25.94116.35NoNo054
8R:R:C305 R:R:F301 17.38544.19NoNo054
9R:R:E298 R:R:F301 18.56765.83NoNo034
10R:R:E298 R:R:W300 11.17544.36NoNo032
11R:R:I309 R:R:Y282 64.35827.25NoYes065
12R:R:I309 R:R:W279 64.38938.22NoYes068
13R:R:N312 R:R:W279 12.090113.56NoYes298
14R:R:L278 R:R:N312 17.117815.1NoNo089
15R:R:L278 R:R:L311 15.02082.77NoNo085
16R:R:I35 R:R:L311 12.91155.71NoNo075
17R:R:R306 R:R:Y310 18.90988.23YesYes157
18R:R:V32 R:R:Y310 13.36577.57NoYes177
19R:R:I83 R:R:V32 11.56744.61NoNo067
20R:R:R283 R:R:Y282 34.14855.14YesYes065
21R:R:I109 R:R:R283 30.58933.76NoYes076
22R:R:I109 R:R:V74 36.76194.61NoNo077
23R:R:S313 R:R:V74 34.8643.23NoNo097
24R:R:D71 R:R:S313 31.05597.36NoNo099
25R:R:D71 R:R:L75 12.25818.14NoNo097
26R:R:D71 R:R:N43 18.051117.5NoNo099
27R:R:N43 R:R:P317 15.020811.4NoNo099
28R:R:F275 R:R:W279 1005.01YesYes298
29R:R:F275 R:R:Y320 83.8844.13YesYes299
30R:R:F119 R:R:Y320 50.46367.22YesYes299
31R:R:F119 R:R:T60 44.04835.19YesNo099
32R:R:T58 R:R:T60 42.39314.71YesNo079
33R:R:N61 R:R:T58 34.95128.77YesYes397
34R:R:F327 R:R:N61 10.19859.67YesYes389
35R:R:N61 R:R:V50 11.89728.87YesNo098
36R:R:M56 R:R:N61 14.42358.41YesYes389
37L:L:?1 L:L:H2 25.835411YesYes100
38L:L:H2 R:R:Y106 11.20655.44YesYes105
39R:R:C157 R:R:Y106 22.97934.03NoYes075
40R:R:C157 R:R:Y103 22.40066.72NoNo076
41R:R:L107 R:R:Y103 34.37253.52YesNo056
42R:R:L107 R:R:W150 32.95384.56YesYes659
43R:R:S66 R:R:W150 39.61173.71NoYes099
44R:R:I146 R:R:S66 14.29287.74NoNo079
45R:R:C62 R:R:I146 11.13196.55NoNo047
46R:R:A142 R:R:C62 14.52933.61NoNo074
47R:R:F119 R:R:Y63 26.73147.22YesYes098
48R:R:A142 R:R:Y63 15.36314NoYes078
49R:R:S115 R:R:S66 33.3526.52NoNo089
50R:R:I116 R:R:L67 18.97837.14NoNo089
51R:R:L67 R:R:N316 18.97836.87NoNo099
52R:R:P81 R:R:Q105 44.08564.74NoNo057
53R:R:P81 R:R:W91 31.92094.05NoYes058
54R:R:I101 R:R:P81 11.86616.77NoNo055
55R:R:L164 R:R:L99 38.5854.15NoNo055
56R:R:L99 R:R:Y95 37.42774.69NoNo053
57R:R:L166 R:R:Y95 32.7923.52NoNo043
58R:R:I177 R:R:L166 23.48334.28NoNo044
59R:R:L164 R:R:W160 36.102328.47NoYes155
60L:L:?1 R:R:Y181 11.44925.02YesYes104
61R:R:W160 R:R:Y181 16.51423.86YesYes154
62R:R:I177 R:R:S90 14.12486.19NoNo045
63R:R:F161 R:R:L99 19.04054.87YesNo055
64R:R:F161 R:R:Y103 21.50468.25YesNo056
65R:R:R185 R:R:Y188 13.0114.12YesYes125
66R:R:F199 R:R:R283 18.54894.28YesYes456
67R:R:F275 R:R:M204 17.52227.46YesNo096
68R:R:M204 R:R:P203 13.16665.03NoNo069
69R:R:E122 R:R:Y63 12.419922.45NoYes088
70R:R:R123 R:R:Y320 47.89377.2YesYes299
71R:R:R123 R:R:Y211 50.1411.32YesYes299
72R:R:I214 R:R:Y211 30.36533.63YesYes299
73R:R:C128 R:R:I214 23.38371.64YesYes279
74R:R:C128 R:R:Y124 19.7816.72YesYes078
75R:R:Y181 R:R:Y192 14.09373.97YesYes145
76R:R:L163 R:R:Y188 10.198514.07NoYes045
77R:R:S178 R:R:W91 13.42792.47NoYes048
78R:R:S178 R:R:V176 11.49283.23NoNo043
79R:R:R185 R:R:S290 10.14875.27YesNo024
80R:R:V286 R:R:Y192 51.048515.14NoYes065
81R:R:R283 R:R:Y200 16.80676.17YesYes068
82R:R:C305 R:R:P281 20.6773.77NoYes059
83R:R:M280 R:R:P281 26.23985.03NoYes069
84R:R:L268 R:R:Y211 13.12315.24NoYes289
85R:R:L268 R:R:T265 12.09011.47NoNo088
86R:R:I319 R:R:Y320 10.042910.88NoYes089
87R:R:N289 R:R:V288 16.49561.48YesNo044
88R:R:Y106 R:R:Y192 14.98358.94YesYes155
89R:R:V286 R:R:Y282 51.33476.31NoYes065
90R:R:L67 R:R:S115 35.20017.51NoNo098
91R:R:N289 R:R:R185 10.15494.82YesYes142
92R:R:M280 R:R:Y200 27.98213.59NoYes068
93R:R:Y188 R:R:Y192 15.201311.91YesYes155
94R:R:W279 R:R:Y200 32.25063.86YesYes088
95R:R:I109 R:R:W279 22.25134.7NoYes078
96R:R:I116 R:R:Y320 11.13196.04NoYes289
97R:R:N316 R:R:Y320 11.19414.65NoYes299
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y181 5.02 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R185 9.1 1 Yes Yes 0 2 0 1
L:L:?1 R:R:N289 10.28 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L302 7.4 1 Yes No 0 4 0 1
L:L:?1 R:R:R306 6.5 1 Yes Yes 0 5 0 1
L:L:H2 R:R:T102 6.85 1 Yes No 0 4 0 1
L:L:H2 R:R:Y106 5.44 1 Yes Yes 0 5 0 1
L:L:H2 R:R:W160 7.41 1 Yes Yes 0 5 0 1
L:L:H2 R:R:Y181 9.8 1 Yes Yes 0 4 0 1
L:L:P3 R:R:A78 3.74 1 Yes No 0 7 0 1
L:L:P3 R:R:Q105 11.05 1 Yes No 0 7 0 1
L:L:P3 R:R:Y282 4.17 1 Yes Yes 0 5 0 1
L:L:P3 R:R:R306 4.32 1 Yes Yes 0 5 0 1
L:L:?4 R:R:N82 10.2 1 No No 0 6 0 1
L:L:?4 R:R:R306 18.04 1 No Yes 0 5 0 1
R:R:A78 R:R:Q105 4.55 1 No No 7 7 1 1
R:R:P81 R:R:Q105 4.74 0 No No 5 7 2 1
R:R:N82 R:R:R306 12.05 1 No Yes 6 5 1 1
R:R:N82 R:R:Y310 6.98 1 No Yes 6 7 1 2
R:R:T102 R:R:W160 7.28 1 No Yes 4 5 1 1
R:R:L164 R:R:T102 4.42 1 No No 5 4 2 1
R:R:C157 R:R:Y106 4.03 0 No Yes 7 5 2 1
R:R:W160 R:R:Y106 21.22 1 Yes Yes 5 5 1 1
R:R:Y106 R:R:Y188 4.96 1 Yes Yes 5 5 1 2
R:R:Y106 R:R:Y192 8.94 1 Yes Yes 5 5 1 2
R:R:L164 R:R:W160 28.47 1 No Yes 5 5 2 1
R:R:W160 R:R:Y181 3.86 1 Yes Yes 5 4 1 1
R:R:W160 R:R:Y188 22.19 1 Yes Yes 5 5 1 2
R:R:I191 R:R:W160 4.7 1 Yes Yes 7 5 2 1
R:R:R185 R:R:Y181 18.52 1 Yes Yes 2 4 1 1
R:R:Y181 R:R:Y188 9.93 1 Yes Yes 4 5 1 2
R:R:Y181 R:R:Y192 3.97 1 Yes Yes 4 5 1 2
R:R:R185 R:R:Y188 4.12 1 Yes Yes 2 5 1 2
R:R:N289 R:R:R185 4.82 1 Yes Yes 4 2 1 1
R:R:R185 R:R:S290 5.27 1 Yes No 2 4 1 2
R:R:I191 R:R:Y188 21.76 1 Yes Yes 7 5 2 2
R:R:Y188 R:R:Y192 11.91 1 Yes Yes 5 5 2 2
R:R:I191 R:R:Y192 8.46 1 Yes Yes 7 5 2 2
R:R:V286 R:R:Y192 15.14 0 No Yes 6 5 2 2
R:R:R283 R:R:Y282 5.14 4 Yes Yes 6 5 2 1
R:R:V286 R:R:Y282 6.31 0 No Yes 6 5 2 1
R:R:I309 R:R:Y282 7.25 0 No Yes 6 5 2 1
R:R:L285 R:R:N289 8.24 0 No Yes 4 4 2 1
R:R:L285 R:R:L302 4.15 0 No No 4 4 2 1
R:R:N289 R:R:P295 11.4 1 Yes No 4 1 1 2
R:R:L302 R:R:R306 4.86 1 No Yes 4 5 1 1
R:R:R306 R:R:Y310 8.23 1 Yes Yes 5 7 1 2
R:R:G180 R:R:Y181 2.9 0 No Yes 3 4 2 1
R:R:N289 R:R:V288 1.48 1 Yes No 4 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7X1U_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 257
Number of Links 302
Number of Hubs 37
Number of Links mediated by Hubs 143
Number of Communities 7
Number of Nodes involved in Communities 58
Number of Links involved in Communities 87
Path Summary
Number Of Nodes in MetaPath 98
Number Of Links MetaPath 97
Number of Shortest Paths 48997
Length Of Smallest Path 3
Average Path Length 11.8237
Length of Longest Path 24
Minimum Path Strength 1.43
Average Path Strength 6.5435
Maximum Path Strength 25.33
Minimum Path Correlation 0.7
Average Path Correlation 0.920855
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 52.1512
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.4935
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• WD40 repeat-like
SCOP2Family Identifier• WD40 repeat-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePCA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePCA
NamePidolic acid
SynonymsL-pyroglutamic acid
Identifier
FormulaC5 H7 N O3
Molecular Weight129.114
SMILES
PubChem7405
Formal Charge0
Total Atoms16
Total Chiral Atoms1
Total Bonds16
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP34981
Sequence
>7X1U_nogp_Chain_R
YQVVTILLV LIICGLGIV GNIMVVLVV MRTKHMRTP TNCYLVSLA 
VADLMVLVA AGLPNITDS IYGSWVYGY VGCLCITYL QYLGINASS 
CSITAFTIE RYIAICHPI KAQFLCTFS RAKKIIIFV WAFTSLYCM 
LWFFLLDLN ISTYKDAIV ISCGYKISR NYYSPIYLM DFGVFYVVP 
MILATVLYG FIARILFLN KQVTKMLAV VVILFALLW MPYRTLVVV 
NSFLSSPFQ ENWFLLFCR ICIYLNSAI NPVIYNLMS QKFRAAFRK 
L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XW9APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1L-Gs-CtGq)/β1/γ22.72022-12-28doi.org/10.1038/s41421-022-00477-0
7XW9 (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-2.72022-12-28doi.org/10.1038/s41421-022-00477-0
7WKDAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1-Gs-CtGq)/β1/γ23.012022-06-15doi.org/10.1038/s41422-022-00641-x
7WKD (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.012022-06-15doi.org/10.1038/s41422-022-00641-x
7X1TAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-chim(NtGi2L-Gs-CtGq)/β1/γ23.262022-08-31doi.org/10.1038/s41422-022-00646-6
7X1T (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-3.262022-08-31doi.org/10.1038/s41422-022-00646-6
7X1UAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi2L-Gs-CtGq)/β1/γ23.192022-08-31doi.org/10.1038/s41422-022-00646-6
7X1U (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.192022-08-31doi.org/10.1038/s41422-022-00646-6




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7X1U_nogp.zip



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