Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.5561010
2L:L:H2 6.59429710
3L:L:P3 8.36571710
4L:L:?4 8.6675410
5R:R:Y24 8.4125432
6R:R:I40 3.315406
7R:R:N43 6.28409
8R:R:V49 4.075408
9R:R:Y63 7.535608
10R:R:L67 4.5825429
11R:R:D71 6.132529
12R:R:I83 3.6225406
13R:R:W91 6.72167618
14R:R:Y93 6.606506
15R:R:Y95 4.975403
16R:R:C98 4.4375419
17R:R:T102 6.58414
18R:R:Y103 7.0075446
19R:R:Q105 6.76617
20R:R:Y106 11.19615
21R:R:L107 4.828545
22R:R:I109 4.05417
23R:R:N110 8.5416
24R:R:F119 8.022529
25R:R:Y124 8.74458
26R:R:C128 3.605457
27R:R:H129 5.085456
28R:R:R141 4.8475405
29R:R:W160 10.91515
30R:R:F161 5.1405
31R:R:L164 6.77415
32R:R:L166 3.5325414
33R:R:Y171 4.4425401
34R:R:Y181 9.704514
35R:R:R185 10.09412
36R:R:Y188 8.6325405
37R:R:Y192 6.45615
38R:R:F196 3.672506
39R:R:F199 8.04333615
40R:R:Y211 8.725409
41R:R:I214 4.41409
42R:R:W279 7.395408
43R:R:Y282 8.37415
44R:R:R283 6.435416
45R:R:N289 5.676514
46R:R:Y310 6.728517
47R:R:N316 5.625429
48R:R:I319 2.9875428
49R:R:Y320 4.26143729
50R:R:F327 7.042528
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:H2 39.92839.63YesYes100
2L:L:H2 R:R:T102 21.18195.48YesYes104
3L:L:H2 R:R:Q105 10.0553.71YesYes107
4L:L:?1 L:L:P3 20.43543.51YesYes100
5L:L:P3 R:R:Q105 51.151112.63YesYes107
6L:L:H2 R:R:L164 21.13196.43YesYes105
7L:L:P3 R:R:I109 62.94523.39YesYes107
8L:L:?1 R:R:Y106 11.86093.76YesYes105
9R:R:I109 R:R:Y106 27.17913.63YesYes175
10R:R:C98 R:R:T102 21.52393.38YesYes194
11R:R:C98 R:R:W91 22.88763.92YesYes198
12R:R:L166 R:R:W91 69.31773.42YesYes148
13R:R:I177 R:R:L166 30.62392.85NoYes044
14R:R:I177 R:R:S90 23.13373.1NoNo045
15R:R:S90 R:R:V176 21.24033.23NoNo053
16R:R:V176 R:R:Y171 17.42853.79NoYes031
17R:R:C98 R:R:L164 28.31353.17YesYes195
18R:R:I101 R:R:Q105 59.21684.12NoYes057
19R:R:I101 R:R:W91 58.37433.52NoYes058
20R:R:C179 R:R:C98 23.25477.28NoYes199
21R:R:C179 R:R:L166 19.30523.17NoYes194
22R:R:L166 R:R:Y95 60.89754.69YesYes043
23R:R:L99 R:R:Y95 52.22297.03NoYes053
24R:R:F161 R:R:L99 50.46293.65YesNo055
25R:R:F161 R:R:Y103 45.13314.44YesYes056
26R:R:L104 R:R:Y103 32.40473.52NoYes046
27R:R:A77 R:R:L104 30.5533.15NoNo054
28R:R:A77 R:R:V76 28.6931.7NoNo054
29R:R:L80 R:R:V76 26.82462.98NoNo084
30R:R:I83 R:R:L80 24.94792.85YesNo068
31R:R:I29 R:R:I83 19.26774.42NoYes056
32R:R:I29 R:R:S86 17.35766.19NoNo054
33R:R:Q25 R:R:S86 15.43924.33NoNo044
34R:R:I109 R:R:W279 85.52843.52YesYes078
35R:R:N312 R:R:W279 89.77819.04NoYes098
36R:R:N312 R:R:N316 1006.81NoYes099
37R:R:N316 R:R:Y320 87.11743.49YesYes299
38R:R:I319 R:R:Y320 21.27376.04YesYes289
39R:R:D71 R:R:N316 29.89828.08YesYes299
40R:R:D71 R:R:N43 21.29876.73YesYes099
41R:R:L72 R:R:N43 13.98785.49NoYes079
42R:R:I40 R:R:L72 12.75754.28YesNo067
43R:R:L64 R:R:Y320 18.82144.69NoYes289
44R:R:L64 R:R:N321 22.0168.24NoNo287
45R:R:F327 R:R:N321 19.467813.29YesNo287
46R:R:F327 R:R:V49 15.443310.49YesYes088
47R:R:F119 R:R:Y320 28.71384.13YesYes299
48R:R:F119 R:R:Y63 27.79219.28YesYes098
49R:R:W91 R:R:Y93 12.52417.36YesYes086
50R:R:W160 R:R:Y106 10.142633.76YesYes155
51R:R:R123 R:R:Y320 33.54744.12NoYes299
52R:R:R123 R:R:Y211 39.10678.23NoYes099
53R:R:E122 R:R:Y63 11.047615.71NoYes088
54R:R:L268 R:R:Y211 34.790212.89NoYes089
55R:R:I214 R:R:L268 33.612.85YesNo098
56R:R:C128 R:R:I214 18.79641.64YesYes079
57R:R:C128 R:R:Y124 12.1576.72YesYes578
58L:L:?1 R:R:N289 59.05837.34YesYes104
59R:R:L285 R:R:N289 43.88195.49NoYes044
60R:R:C305 R:R:L285 32.62993.17NoNo054
61R:R:C305 R:R:P281 31.41633.77NoNo059
62R:R:M280 R:R:P281 33.21795.03NoNo069
63R:R:M280 R:R:Y200 30.89924.79NoNo068
64R:R:F196 R:R:Y200 23.89276.19YesNo068
65R:R:F196 R:R:V287 14.43413.93YesNo066
66R:R:L193 R:R:V287 12.04854.47NoNo046
67R:R:I214 R:R:L218 13.59162.85YesNo098
68R:R:L278 R:R:N312 15.55595.49NoNo089
69R:R:C308 R:R:L278 14.49663.17NoNo078
70R:R:F304 R:R:P281 14.40074.33NoNo049
71R:R:C308 R:R:F304 13.52495.59NoNo074
72R:R:F301 R:R:L285 13.93364.87NoNo044
73R:R:F296 R:R:F301 10.63896.43NoNo014
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y106 3.76 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y181 8.78 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R185 11.7 1 Yes Yes 0 2 0 1
L:L:?1 R:R:Y192 3.76 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y282 6.27 1 Yes Yes 0 5 0 1
L:L:?1 R:R:V286 6.37 1 Yes No 0 6 0 1
L:L:?1 R:R:N289 7.34 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L302 4.44 1 Yes No 0 4 0 1
L:L:H2 R:R:T102 5.48 1 Yes Yes 0 4 0 1
L:L:H2 R:R:Q105 3.71 1 Yes Yes 0 7 0 1
L:L:H2 R:R:Y106 10.89 1 Yes Yes 0 5 0 1
L:L:H2 R:R:L164 6.43 1 Yes Yes 0 5 0 1
L:L:H2 R:R:Y181 5.44 1 Yes Yes 0 4 0 1
L:L:P3 R:R:Q105 12.63 1 Yes Yes 0 7 0 1
L:L:P3 R:R:Y106 11.13 1 Yes Yes 0 5 0 1
L:L:P3 R:R:I109 3.39 1 Yes Yes 0 7 0 1
L:L:P3 R:R:Y282 11.13 1 Yes Yes 0 5 0 1
L:L:?4 R:R:A78 3.9 1 Yes No 0 7 0 1
L:L:?4 R:R:Q105 9.88 1 Yes Yes 0 7 0 1
L:L:?4 R:R:Y310 8.7 1 Yes Yes 0 7 0 1
R:R:A78 R:R:Q105 4.55 1 No Yes 7 7 1 1
R:R:G79 R:R:N82 3.39 1 No No 7 6 2 2
R:R:G79 R:R:Y310 5.79 1 No Yes 7 7 2 1
R:R:N82 R:R:R306 3.62 1 No No 6 5 2 2
R:R:N82 R:R:Y310 8.14 1 No Yes 6 7 2 1
R:R:C98 R:R:T102 3.38 1 Yes Yes 9 4 2 1
R:R:C98 R:R:L164 3.17 1 Yes Yes 9 5 2 1
R:R:I101 R:R:Q105 4.12 0 No Yes 5 7 2 1
R:R:Q105 R:R:T102 5.67 1 Yes Yes 7 4 1 1
R:R:L164 R:R:T102 11.79 1 Yes Yes 5 4 1 1
R:R:I109 R:R:Y106 3.63 1 Yes Yes 7 5 1 1
R:R:W160 R:R:Y106 33.76 1 Yes Yes 5 5 2 1
R:R:Y106 R:R:Y192 3.97 1 Yes Yes 5 5 1 1
R:R:I109 R:R:N110 5.66 1 Yes Yes 7 6 1 2
R:R:I109 R:R:W279 3.52 1 Yes Yes 7 8 1 2
R:R:L164 R:R:W160 5.69 1 Yes Yes 5 5 1 2
R:R:W160 R:R:Y188 3.86 1 Yes Yes 5 5 2 2
R:R:W160 R:R:Y192 7.72 1 Yes Yes 5 5 2 1
R:R:R185 R:R:Y181 15.43 1 Yes Yes 2 4 1 1
R:R:Y181 R:R:Y188 12.91 1 Yes Yes 4 5 1 2
R:R:Y181 R:R:Y192 5.96 1 Yes Yes 4 5 1 1
R:R:R185 R:R:Y192 7.2 1 Yes Yes 2 5 1 1
R:R:N289 R:R:R185 6.03 1 Yes Yes 4 2 1 1
R:R:V286 R:R:Y192 10.09 1 No Yes 6 5 1 1
R:R:V286 R:R:Y282 8.83 1 No Yes 6 5 1 1
R:R:I309 R:R:Y282 7.25 0 No Yes 6 5 2 1
R:R:L285 R:R:N289 5.49 0 No Yes 4 4 2 1
R:R:N289 R:R:P295 8.15 1 Yes No 4 1 1 2
R:R:L302 R:R:R306 3.64 0 No No 4 5 1 2
R:R:R306 R:R:Y310 6.17 1 No Yes 5 7 2 1
R:R:I309 R:R:Y310 4.84 0 No Yes 6 7 2 1
R:R:L302 R:R:Q297 2.66 0 No No 4 3 1 2
R:R:L292 R:R:N289 1.37 0 No Yes 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7XW9_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.14
Number of Linked Nodes 281
Number of Links 320
Number of Hubs 50
Number of Links mediated by Hubs 176
Number of Communities 6
Number of Nodes involved in Communities 54
Number of Links involved in Communities 85
Path Summary
Number Of Nodes in MetaPath 74
Number Of Links MetaPath 73
Number of Shortest Paths 55797
Length Of Smallest Path 3
Average Path Length 13.722
Length of Longest Path 35
Minimum Path Strength 1.155
Average Path Strength 5.68549
Maximum Path Strength 22.445
Minimum Path Correlation 0.7
Average Path Correlation 0.926214
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.125
Average % Of Corr. Nodes 50.9483
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 53.7361
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePCA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePCA
NamePidolic acid
Synonyms5-Pyrrolidone-2-carboxylic acid
Identifier
FormulaC5 H7 N O3
Molecular Weight129.114
SMILES
PubChem7405
Formal Charge0
Total Atoms16
Total Chiral Atoms1
Total Bonds16
Total Aromatic Bonds0

CodeNH2
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP34981
Sequence
>7XW9_nogp_Chain_R
QLQPRAVVA LEYQVVTIL LVLIICGLG IVGNIMVVL VVMRTKHMR 
TPTNCYLVS LAVADLMVL VAAGLPNIT DSIYGSWVY GYVGCLCIT 
YLQYLGINA SSCSITAFT IERYIAICH PIKAQFLCT FSRAKKIII 
FVWAFTSLY CMLWFFLLD LNISTYKDA IVISCGYKI SRNYYSPIY 
LMDFGVFYV VPMILATVL YGFIARILF LTVSSRKQV TKMLAVVVI 
LFALLWMPY RTLVVVNSF LSSPFQENW FLLFCRICI YLNSAINPV 
IYNLMSQKF RAAFRKLCN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XW9APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1L-Gs-CtGq)/β1/γ22.72022-12-2810.1038/s41421-022-00477-0
7XW9 (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-2.72022-12-2810.1038/s41421-022-00477-0
7X1UAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi2L-Gs-CtGq)/β1/γ23.192022-08-3110.1038/s41422-022-00646-6
7X1U (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.192022-08-3110.1038/s41422-022-00646-6
7X1TAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-chim(NtGi2L-Gs-CtGq)/β1/γ23.262022-08-3110.1038/s41422-022-00646-6
7X1T (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTaltirelin-3.262022-08-3110.1038/s41422-022-00646-6
7WKDAPeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-chim(NtGi1-Gs-CtGq)/β1/γ23.012022-06-1510.1038/s41422-022-00641-x
7WKD (No Gprot) APeptideThyrotropin Releasing HormoneTRHHomo sapiensTRH-3.012022-06-1510.1038/s41422-022-00641-x




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7XW9_nogp.zip



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